View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667-Insertion-9 (Length: 529)
Name: NF4667-Insertion-9
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667-Insertion-9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 8 - 529
Target Start/End: Original strand, 1967712 - 1968233
Alignment:
| Q |
8 |
caaagcattggaaacaccagagtataatgctcaaggagatatatcgttgccggtaacatattttaagaaaacatacatgttaattattattattactatt |
107 |
Q |
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| T |
1967712 |
caaagcattggaaacaccagagtataatgctcaaggagatatatcgttgccggtaacataatttaagaaaacatacatgttaattattattattactatt |
1967811 |
T |
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| Q |
108 |
cactgcaattttgcttgatctcatgattgtttttaacattgatgcagggaaagtcgaatacgagaatgtcccctcttaaatatgaatcacaggaagatga |
207 |
Q |
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| T |
1967812 |
cactgcaattttgcttgatctcatgattgtttttaacattgatgcagggaaagtcgaatacgagaatgtcccctcttaaatatgaatcacaggaagatga |
1967911 |
T |
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| Q |
208 |
cgagtctaacaacaagtgtgaaccaagtagatctcctatgcataatggctatacacattctgcaatatcgttgcatagtaagagatcagattcatctagg |
307 |
Q |
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| T |
1967912 |
cgagtctaacaacaagtgtgaaccaagtagatctcctatgcataatggctatacacattctgcaatatcgttgcatagtaagagatcagattcatctagg |
1968011 |
T |
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| Q |
308 |
aagaatattccagagttaaggacacaaaggtctcatttgaatcaagcagcaatagatttctccgattctattaaaaaggaacagggcatgtcaggccgag |
407 |
Q |
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| T |
1968012 |
aagaatattccagagttaagggcacaaaggtctcatttgaatcaagcagcaatagatttctccgattctattaaaaaggaacagggcatgtcaggccgag |
1968111 |
T |
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| Q |
408 |
acaccggaatggtaaacaacaactttctctttactgttatcaactttctatttatcaacttcctcttgnnnnnnnatatggtcaaggtttatttttcttc |
507 |
Q |
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| T |
1968112 |
acaccggaatggtaaacaacaactttctctttactgttatcaactttctatttatcaacttcctcttgtttttttatatggtcaaggtttatttttcttc |
1968211 |
T |
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| Q |
508 |
ttgtgagttgtgactattttaa |
529 |
Q |
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| T |
1968212 |
ttgtgagttgtgactattttaa |
1968233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 40252728 - 40252783
Alignment:
| Q |
155 |
ggaaagtcgaatacgagaatgtcccctcttaaatatgaatcacaggaagatgacga |
210 |
Q |
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| T |
40252728 |
ggaaagtcgaatactagaatgtctcatcttaaatatgaatcacaagaagatgacga |
40252783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 40252676 - 40252718
Alignment:
| Q |
8 |
caaagcattggaaacaccagagtataatgctcaaggagatata |
50 |
Q |
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| T |
40252676 |
caaagcattggaaacaccagagtataatgctcgaggtgatata |
40252718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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