View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_high_1 (Length: 1085)
Name: NF4667_high_1
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 1004; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1004; E-Value: 0
Query Start/End: Original strand, 5 - 1070
Target Start/End: Original strand, 54074635 - 54075697
Alignment:
| Q |
5 |
gccgtttctggttggagccctgattacgacctagacgatcgtccatggaagctaaacgcaaaaaatcacgttgtcgttcataccaatgcaaacaaaaaca |
104 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074635 |
gccgtttctggttggagacctgattacgaccttgacgatcgtccatggaagctaaacgcaaaaaatcacgttgtcgttcataccaatgcaaacaaaaaca |
54074734 |
T |
|
| Q |
105 |
acaacatcgtcaacgagttttcacaccaatcacgtcgtgtttcatccatcaacttcagaaactcgttctcaacggtttcagttttattaccagattggga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074735 |
acaacatcgtcaacgagttttcacaccaatcacgtcgtgtttcatccatcaacttcagaaactcgttctcaacggtttcagttttattaccagattggga |
54074834 |
T |
|
| Q |
205 |
gattctcgttctcgtttctccaaacacgcctttatcttcttccgatgaatataactgccttttccggaacaaccaaatgtctcaggcgaaattctctggt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074835 |
gattctcgttctcgtttctccaaacacgcctttatcttcttccgatgaatataactgccttttccggaacaaccaaatgtctcaggcgaaattctctggt |
54074934 |
T |
|
| Q |
305 |
gttttacctttcaccaaccgtacaacgttcaagtgcgacatgccgagtacggtttggcgccggaaaatattttcgcaacctatgttggtaaccggaacgt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074935 |
gttttacctttcaccaaccgtacaacgttcaagtgcgacatgccgggtacggtttggcgccggaaaatattttcgcaacctatgttggtaaccggaacgt |
54075034 |
T |
|
| Q |
405 |
cggaaaatgaatttcaaaatcattctccggcgacggagcttgtgaggtggaattttgttgtttacgagtctttttcaatggaagacgacgtcgttttgtt |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54075035 |
cggaaaatgaatttcaaaatcattctccggcggcggagcttgtgaggtggaattttgttgtttacgagtctttttcaatggaagacgacgtagttttgtt |
54075134 |
T |
|
| Q |
505 |
tgccaaaggtgtgaatcatcgtcaaggctacgacaggccggcgaaggagcttaactgtgttttccaaataggagacggaattcgcaccgccgttacaagc |
604 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54075135 |
tgccaaaggtgttaatcatcgtcaaggctacgacaggccggcgaaggagcttaactgtgttttccaaataggagacggaattcgcaccgccgttacaagc |
54075234 |
T |
|
| Q |
605 |
tctgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattccaaaattggtgtttccctcgagattattggagaaaacatcg |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
54075235 |
tctgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattccgaaattggagtttccctcgagattattggagaaaacatcg |
54075334 |
T |
|
| Q |
705 |
tggttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtggctgttcaaaagtttgggcctccggcccagcccaaatattt |
804 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
54075335 |
tggttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtggcagttcaaaactttgggcctccggcccagcccaaatattt |
54075434 |
T |
|
| Q |
805 |
cctttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatattgtatgat |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54075435 |
cctttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatattgtatgat |
54075534 |
T |
|
| Q |
905 |
aatggaagcgatgatgatgatgatttggagagaataattaaggagctttgtgaagagggttataatataagcacgttgctttggatttggcctaagactc |
1004 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075535 |
aatggaagc---gatgatgatgatttggagagaataattaaggagcttcgtgaagagggttataatataagcacgttgctttggatttggcctaagactc |
54075631 |
T |
|
| Q |
1005 |
aagaagctggattctctcacagtattttgtactcaaaatccaaaggattatgcacttggatgatgt |
1070 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54075632 |
aagaagctggattctcacacagtattttgtactcaaaatccaaaggattatgcacttggatgatgt |
54075697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 440 - 529
Target Start/End: Complemental strand, 3229482 - 3229393
Alignment:
| Q |
440 |
gagcttgtgaggtggaattttgttgtttacgagtctttttcaatggaagacgacgtcgttttgtttgccaaaggtgtgaatcatcgtcaa |
529 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3229482 |
gagcttgtgaggtggaattttgttgtttacgagtctttttcaatggaggacgacgtcgttttgtttgccaaaggtgtgaatcatcgtcaa |
3229393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 576 - 645
Target Start/End: Complemental strand, 48529259 - 48529190
Alignment:
| Q |
576 |
gagacggaattcgcaccgccgttacaagctctgttcaagaggttttccgatgcttgcatccagatccgtc |
645 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||| |
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| T |
48529259 |
gagacggaatttgcaccgccgttacaagctccattcaagaggttttcccatgcctccatccagatccgtc |
48529190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 576 - 623
Target Start/End: Original strand, 34849736 - 34849783
Alignment:
| Q |
576 |
gagacggaattcgcaccgccgttacaagctctgttcaagaggttttcc |
623 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
34849736 |
gagacgtaattcgcaccgccgttacaagctccgttcaagaggttttcc |
34849783 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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