View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667_high_13 (Length: 401)

Name: NF4667_high_13
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667_high_13
NF4667_high_13
[»] chr8 (8 HSPs)
chr8 (1-380)||(7547643-7548024)
chr8 (34-224)||(40028766-40028956)
chr8 (66-224)||(22573079-22573237)
chr8 (63-168)||(32889951-32890056)
chr8 (46-143)||(11066508-11066605)
chr8 (70-170)||(31734314-31734414)
chr8 (65-168)||(9028646-9028749)
chr8 (176-225)||(26543874-26543923)
[»] chr7 (10 HSPs)
chr7 (8-225)||(10026380-10026598)
chr7 (5-163)||(39644909-39645068)
chr7 (65-232)||(23318950-23319117)
chr7 (65-224)||(41482432-41482591)
chr7 (1-102)||(45980404-45980505)
chr7 (43-89)||(47038573-47038619)
chr7 (65-228)||(39594577-39594738)
chr7 (109-224)||(2334042-2334160)
chr7 (65-142)||(24429716-24429793)
chr7 (190-222)||(37967317-37967349)
[»] chr2 (8 HSPs)
chr2 (1-220)||(16567657-16567877)
chr2 (66-224)||(24447924-24448082)
chr2 (12-160)||(7670385-7670534)
chr2 (8-184)||(18665144-18665319)
chr2 (8-101)||(38490255-38490345)
chr2 (65-143)||(1529690-1529768)
chr2 (65-235)||(40054475-40054645)
chr2 (66-203)||(40626434-40626571)
[»] chr1 (7 HSPs)
chr1 (18-224)||(45792642-45792848)
chr1 (36-161)||(50004879-50005004)
chr1 (65-223)||(26793702-26793860)
chr1 (147-235)||(12855329-12855417)
chr1 (111-167)||(20018611-20018667)
chr1 (65-233)||(4076358-4076526)
chr1 (36-101)||(4950258-4950322)
[»] chr5 (5 HSPs)
chr5 (43-224)||(13039659-13039840)
chr5 (43-224)||(13109653-13109834)
chr5 (112-224)||(13417063-13417174)
chr5 (65-222)||(34731215-34731372)
chr5 (152-222)||(16290817-16290887)
[»] chr4 (13 HSPs)
chr4 (65-183)||(26635273-26635391)
chr4 (66-224)||(22202870-22203028)
chr4 (65-204)||(19181425-19181564)
chr4 (65-184)||(45413782-45413901)
chr4 (70-209)||(35320584-35320723)
chr4 (46-143)||(24155193-24155290)
chr4 (109-162)||(26183660-26183713)
chr4 (176-223)||(26635551-26635598)
chr4 (67-223)||(42964462-42964616)
chr4 (109-204)||(55945708-55945803)
chr4 (66-164)||(33451327-33451425)
chr4 (54-99)||(29539212-29539257)
chr4 (109-234)||(34666339-34666468)
[»] chr3 (5 HSPs)
chr3 (76-203)||(48936324-48936449)
chr3 (65-224)||(32490847-32491006)
chr3 (8-94)||(44764024-44764111)
chr3 (71-234)||(45818620-45818783)
chr3 (147-228)||(39795333-39795414)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 7548024 - 7547643
Alignment:
Q  1 catgagtgatgaattgagagaaagggcaaaatcgaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaag 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7548024 catgagcgatgaattgagagaaagggcaaaatcgaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaag 7547925  T
Q  101 gagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7547924 gagaagtgggataggataaaaaataggttaaacttatcatttcttgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcttg 7547825  T
Q  201 tctccttattctgcgcaccaaacgaaccgtaaaggactaaggtttaaacaatcatgtatgtgacaatgaatggcatgttgacctccaatgtgatatccaa 300  Q
    |||||||||||| |||||||||||| |||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7547824 tctccttattcttcgcaccaaacgagccgtaaagggataaggtttaatcaatcatgtatgtgacaatgaatggcatgttgacctccaatgtgatatccaa 7547725  T
Q  301 gagaccaagac--aaggaagtaaaaaataataataaatattaagttattttttcagataagcatgcatactaaatagtaagt 380  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7547724 gagaccaagacataaggaagtaaaaaataataataaatattaagttatttttttagataagcatgcatactaaatagtaagt 7547643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 40028956 - 40028766
Alignment:
Q  34 gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaac 133  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||  |||||||||| |||| |||||||| ||| ||||  ||| ||||| ||||||||     
T  40028956 gaattctagcgctaatcatgataggataattctaacccacaaaatcctaaggataaaaataacaaaggaggagtaggatgagattagaaaaaggttaaag 40028857  T
Q  134 ttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacg 224  Q
    |||||||||| |||||| |||||||||||| |||| || || ||||||||| | |||||||||| ||||||||||| ||||||||||||||    
T  40028856 ttatcatttcctgttggcgcaccaaacaacagattgaggcaggatatgatattttaatcatatcctgtctccttatcctgcgcaccaaacg 40028766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 22573237 - 22573079
Alignment:
Q  66 taacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacgg 165  Q
    |||||||||||||||||||||||| |||  ||||||   | | ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  22573237 taacccaccaaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttatcatttcctgttggtgcaccaaacaacgg 22573138  T
Q  166 attaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacg 224  Q
    ||| || || |||| |||| | ||||||||||||||||||||||  |||||||||||||    
T  22573137 attgagtcaggataggatattctaatcatatcatgtctccttatcatgcgcaccaaacg 22573079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 32890056 - 32889951
Alignment:
Q  63 ttctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaa 162  Q
    |||||||||||||||| |||||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |||||||    
T  32890056 ttctaacccaccaaaatctaaggataaaaacaacaaaggagaagtgggataggattagaaataggttaaacttatcatttcatattggggcatcaaacaa 32889957  T
Q  163 cggatt 168  Q
    ||||||    
T  32889956 cggatt 32889951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 11066605 - 11066508
Alignment:
Q  46 taatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttc 143  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||| |||| ||||||   ||| ||||||||| ||||||||||| || ||||| ||||    
T  11066605 taatcatgataggataattctaacctaccaaaaattaaggataaaaataacaaaggctgagtaggataggattagaaataggtttaagttatcctttc 11066508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 31734414 - 31734314
Alignment:
Q  70 ccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggatta 169  Q
    |||||||||||||||||||| |||| ||||||     ||||||| |||  |||||||||| || |||||||||| | |||||||||||||||||||||||    
T  31734414 ccaccaaaaactaaggataaaaataacaaagggtggatgggataagattggaaataggtttaatttatcatttcttattggtgcaccaaacaacggatta 31734315  T
Q  170 a 170  Q
    |    
T  31734314 a 31734314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 9028646 - 9028749
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    |||||||| ||||||| |||||||| |||  ||||||   | | ||||||||| | ||||||||| || ||||| ||| ||||||||||||||||||||     
T  9028646 ctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaataggtttaaattatccttttatgttggtgcaccaaacaacc 9028745  T
Q  165 gatt 168  Q
    ||||    
T  9028746 gatt 9028749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 26543923 - 26543874
Alignment:
Q  176 gatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacga 225  Q
    ||||||||||| | |||||||| ||||||| ||| |||||||||||||||    
T  26543923 gatatgataattttatcatatcctgtctccctatcctgcgcaccaaacga 26543874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 10026598 - 10026380
Alignment:
Q  8 gatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaag 106  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||| ||    
T  10026598 gatgaattgagagaaagggcaaaataagaattctagtgctaatcataataggataattctaatccaccaaaaactaaggataagaataacaaaggaggag 10026499  T
Q  107 tgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctcct 206  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||    
T  10026498 tgggatatgattagaaataggttaaacttatcatttcatgttggtgcaccaaacaagggattaagacaagatatgataatctaatcatatcctgtctcct 10026399  T
Q  207 tattctgcgcaccaaacga 225  Q
    ||| |||||||||||||||    
T  10026398 tatcctgcgcaccaaacga 10026380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 39645068 - 39644909
Alignment:
Q  5 agtgatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggag 103  Q
    ||||||||||||| ||| ||||||||||  |||||  |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||     
T  39645068 agtgatgaattgaaagagagggcaaaataagaatttaagtgctaatcatgataggataattctaacccaccaaaaactaaggataaaaataacaaaggat 39644969  T
Q  104 aagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaac 163  Q
     ||| ||||||||| | |||| |||| || ||||| |||  | |||| ||||||||||||    
T  39644968 gagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaac 39644909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 232
Target Start/End: Original strand, 23318950 - 23319117
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    |||||||| ||||||| |||||||| |||  ||||||   | | ||||||||| | ||||||||| || ||||| ||||||||||||| ||||||||||     
T  23318950 ctaacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaaca 23319049  T
Q  165 gattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacgaaccgtaa 232  Q
    |||| |  || ||||||||| ||| |||||||| ||||| |||||  |||| ||||| || |||||||    
T  23319050 gatttaatcaggatatgatagtgttatcatatcctgtcttcttatcatgcgtaccaagcggaccgtaa 23319117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 41482432 - 41482591
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    ||||||||||||||||||||||||| |||| ||||||   ||| ||||| ||| | ||||||||| || ||||| |||| ||||||||||||||||| ||    
T  41482432 ctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggtgcaccaaacagcg 41482531  T
Q  165 gattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacg 224  Q
     |||||  || || |||||| | | ||| |||||||||| | |||  || ||||||||||    
T  41482532 cattaaatcaggagatgatagttttatcctatcatgtcttcctatcatgtgcaccaaacg 41482591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 45980404 - 45980505
Alignment:
Q  1 catgagtgatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaa 99  Q
    |||||| |||||||||| ||| |||||||| |  ||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||| |||| ||||    
T  45980404 catgagcgatgaattgaaagagagggcaaattaagaattttagtgctaatcatgataggataattct-acccaccaaaaagtaaggataaaaataacaaa 45980502  T
Q  100 gga 102  Q
    |||    
T  45980503 gga 45980505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 47038619 - 47038573
Alignment:
Q  43 tgctaatcataataggataattctaacccaccaaaaactaaggataa 89  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||    
T  47038619 tgctaatcatgataggataattctaacccaccaaaaactaaagataa 47038573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 39594738 - 39594577
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    |||||||| |||||||||||||||| |||  |||||||  | |  |||| ||| || |||||||| || ||| ||| || | ||||||||||||||||||    
T  39594738 ctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcaccaaacaacg 39594639  T
Q  165 gattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacgaacc 228  Q
    |||| |   | ||||||||| | | |||||||| | ||||  ||||||| ||||||||||||||    
T  39594638 gatttaagtaggatatgatagttttatcatatcctctctc--tattctgtgcaccaaacgaacc 39594577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 2334042 - 2334160
Alignment:
Q  109 ggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggatt-aaga--caagatatgataatgtaatcatatcatgtctcc 205  Q
    ||||||||| | ||||||||| || |||||   || | ||||||||||||||| |||||| || |  || ||||||||| ||| ||||||||||||||||    
T  2334042 ggataggattaaaaataggtttaagttatccaatcctattggtgcaccaaacaccggattgaatattcaggatatgatagtgttatcatatcatgtctcc 2334141  T
Q  206 ttattctgcgcaccaaacg 224  Q
    ||||  |||||| ||||||    
T  2334142 ttatcatgcgcatcaaacg 2334160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 24429793 - 24429716
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcattt 142  Q
    ||||||||||||||||||||||||| |||| ||||||   |||  |||||||| | |||||| || || |||||||||    
T  24429793 ctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaattatcattt 24429716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 37967349 - 37967317
Alignment:
Q  190 atcatatcatgtctccttattctgcgcaccaaa 222  Q
    |||||||||||||||||||| ||||||||||||    
T  37967349 atcatatcatgtctccttatcctgcgcaccaaa 37967317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 16567657 - 16567877
Alignment:
Q  1 catgagtgatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaa 99  Q
    |||||| ||||||||||||||||||| |||||  |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||    
T  16567657 catgagcgatgaattgagagaaagggtaaaataagaattctattgctaatcataataggataattccaacccaccaaaaactatggataagaataacaaa 16567756  T
Q  100 ggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcat 199  Q
    |||| |||| |||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  16567757 ggaggagtgagataggattagaaataggttaaacttatccttttctgttggtgcaccaaacaacggattaagacatgatatgataatcaaatcatatcat 16567856  T
Q  200 gtctccttattctgcgcacca 220  Q
    |||||||||| ||||||||||    
T  16567857 gtctccttatcctgcgcacca 16567877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 24448082 - 24447924
Alignment:
Q  66 taacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacgg 165  Q
    ||||||||||||||  |||||| | |||||||||||||  || ||| ||||| | |||||| |||||||||||||||| | | ||  |||||||||||||    
T  24448082 taacccaccaaaaataaaggattaaaatatcaaaggaggggtaggacaggattacaaatagattaaacttatcatttcctatgggcacaccaaacaacgg 24447983  T
Q  166 attaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacg 224  Q
    ||| ||||| ||||  ||| | |||||||||||||||||||||| ||||||||||||||    
T  24447982 attgagacaggataaaatattttaatcatatcatgtctccttatcctgcgcaccaaacg 24447924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 7670534 - 7670385
Alignment:
Q  12 aattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtggg 110  Q
    |||||||||| ||||||||||  | ||| || |||||||||| |||||||||||||||||||||||||| ||||||||| |||  |||| |   | | ||    
T  7670534 aattgagagagagggcaaaataaggattataatgctaatcatgataggataattctaacccaccaaaaattaaggataagaattacaaaagctcaatagg 7670435  T
Q  111 ataggataagaaataggttaaacttatcatttcatgttggtgcaccaaac 160  Q
    ||||||| ||||| ||||||||||||||||||  | ||||||||||||||    
T  7670434 ataggattagaaacaggttaaacttatcattttctattggtgcaccaaac 7670385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 18665319 - 18665144
Alignment:
Q  8 gatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaag 106  Q
    ||||||||||||||  |||||||||  | ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| | || ||||||   ||    
T  18665319 gatgaattgagaga--gggcaaaataaggattttagtgctaatcatgataggataattctaacccaccaaaaattaaggataaaattaacaaagggtgag 18665222  T
Q  107 tgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgata 184  Q
    |  ||||  || ||||||||||| || ||||| |||| | ||||||||| |||||||  ||||   ||||||||||||    
T  18665221 taagatattattagaaataggtttaagttatcctttccttttggtgcacgaaacaacaaattacaccaagatatgata 18665144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 38490255 - 38490345
Alignment:
Q  8 gatgaattgagagaaagggcaaaatcgaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaagg 101  Q
    ||||||||||||||  ||||||||| | ||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||| ||||||    
T  38490255 gatgaattgagaga--gggcaaaataggattttagtgttaatcatgataggataattctaacccaccaaaaactaa-gataaaaataacaaagg 38490345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 1529690 - 1529768
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttc 143  Q
    |||||||||||||||  |||||||| || | |||||||| ||| ||||| ||| | ||||| |||||||||||||||||    
T  1529690 ctaacccaccaaaaatcaaggataagaacaacaaaggaggagtaggatatgattaaaaataagttaaacttatcatttc 1529768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 40054475 - 40054645
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    |||||||| | |||||||||||| | |||| |||||||    | ||||||||| |  |||||||| |  |||||||||  | ||||||||||||||||      
T  40054475 ctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcattttctattggtgcaccaaacaaga 40054574  T
Q  165 gattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacgaaccgtaaagg 235  Q
    |||| | | | ||||| ||| ||| ||||||||||||||| ||||  |||||| ||||||| || ||||||    
T  40054575 gatttaaataggatataatagtgttatcatatcatgtctcgttatcatgcgcatcaaacgacccctaaagg 40054645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 40626571 - 40626434
Alignment:
Q  66 taacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacgg 165  Q
    |||||||||||||  ||||||||| ||||  |||||   ||| ||||||||| |||||||  || || ||||| |||| | ||||||||||||||| | |    
T  40626571 taacccaccaaaatttaaggataaaaataataaagggtgagtaggataggattagaaatatatttaaattatcctttcctattggtgcaccaaacagcag 40626472  T
Q  166 attaagacaagatatgataatgtaatcatatcatgtct 203  Q
    ||| |  |||||||||||| | | |||||||| |||||    
T  40626471 attgaatcaagatatgatagttttatcatatcctgtct 40626434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 45792642 - 45792848
Alignment:
Q  18 gagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggatagga 116  Q
    |||| ||||||||||  ||||| || |||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||||   | | ||||||||    
T  45792642 gagagagggcaaaataagaattataatgctaatcatgataggataattctaacccaccaaaaactaaggataagaattacaaaggctcaataggatagga 45792741  T
Q  117 taagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgc 216  Q
    | ||||| | ||||||||||||||||  ||||||||||||||| |||||||| || || |||| |||| | |||||||||||||||||||||| |||| |    
T  45792742 ttagaaacatgttaaacttatcattttctgttggtgcaccaaa-aacggattgagtcaggataggatattctaatcatatcatgtctccttatcctgcac 45792840  T
Q  217 accaaacg 224  Q
    ||||||||    
T  45792841 accaaacg 45792848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 50004879 - 50005004
Alignment:
Q  36 attctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaactt 135  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||   | | ||||||||| ||||||||||| || ||    
T  50004879 attctagtgctaatcatgataggataattctaacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaatt 50004978  T
Q  136 atcatttcatgttggtgcaccaaaca 161  Q
    ||| |||  | |||||||||||||||    
T  50004979 atccttttttattggtgcaccaaaca 50005004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 26793860 - 26793702
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    |||||||||||||||||||| |||| |||| ||||||   | | ||||||||| ||||||| ||| || ||||| |||  | ||||||||||||||||||    
T  26793860 ctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctattggtgcaccaaacaacg 26793761  T
Q  165 gattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaac 223  Q
    |||| |  || ||||||||| |   |||||||||||||| |||||  || |||||||||    
T  26793760 gattgaatcaggatatgatagttctatcatatcatgtcttcttatcatgtgcaccaaac 26793702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 12855329 - 12855417
Alignment:
Q  147 ttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacgaaccgtaaagg 235  Q
    |||||||| ||||||| ||||| | | | ||||||||||||  |||||||| |||||||||||  || ||||||||||  |||||||||    
T  12855329 ttggtgcatcaaacaatggatttaaataggatatgataatgatatcatatcctgtctccttatcatgtgcaccaaacgggccgtaaagg 12855417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 20018667 - 20018611
Alignment:
Q  111 ataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggat 167  Q
    ||||||| || |||||||| || ||||||| ||||||||||| ||||||||||||||    
T  20018667 ataggattagtaataggtttaatttatcatatcatgttggtgtaccaaacaacggat 20018611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 233
Target Start/End: Original strand, 4076358 - 4076526
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaag-gagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaac 163  Q
    |||| |||||||||||||||||| | || | ||||| | ||| | ||||||||| || |||||||| || ||||| |||| | ||| ||||||||||| |    
T  4076358 ctaatccaccaaaaactaaggattagaaaaacaaagagtgaa-taggataggattagtaataggtttaatttatcctttcctattgatgcaccaaacacc 4076456  T
Q  164 ggattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacgaaccgtaaa 233  Q
     ||||||   | | ||||||| ||| |||||||| | |||||||||  || |||||||||  ||||||||    
T  4076457 agattaaataagggtatgatagtgttatcatatcctatctccttatcatgtgcaccaaaccgaccgtaaa 4076526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 4950322 - 4950258
Alignment:
Q  36 attctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaagg 101  Q
    ||||| ||| |||||||  || |||||||||||||||||||||||| ||||||| |||| ||||||    
T  4950322 attctggtgttaatcatggtatgataattctaacccaccaaaaact-aggataaaaataacaaagg 4950258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 224
Target Start/End: Complemental strand, 13039840 - 13039659
Alignment:
Q  43 tgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcattt 142  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| ||||  ||||||    | |||||  || ||||||| ||||||||||||||||    
T  13039840 tgctaatcatgataggaaaattctaacccaccaaaaactaaggataaaaataataaaggatggataggatataattagaaatatgttaaacttatcattt 13039741  T
Q  143 catgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacg 224  Q
    | | | || ||||||||||| ||||||||||| |||| ||||   |||||||||  |||||| |||| ||||||||||||||    
T  13039740 cctatgggcgcaccaaacaatggattaagacaggataggatatactaatcatattttgtctctttatcctgcgcaccaaacg 13039659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 43 - 224
Target Start/End: Complemental strand, 13109834 - 13109653
Alignment:
Q  43 tgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcattt 142  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||| |||| ||||||     | ||||| ||| ||||||| ||||||||||||||||    
T  13109834 tgctaatcatgatatgaaaattctaacccaccaaaaactaaggataaaaataacaaagggtggataggatatgattagaaatatgttaaacttatcattt 13109735  T
Q  143 catgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacg 224  Q
      | | || ||||||||||| ||||||||||| |||| ||||   |||||||||  |||||| |||| ||||||||||||||    
T  13109734 tctatgggcgcaccaaacaatggattaagacaggataggatatactaatcatattttgtctctttatcctgcgcaccaaacg 13109653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 13417063 - 13417174
Alignment:
Q  112 taggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctccttattc 211  Q
    |||||| |||||||||||||||||||| |||  ||||||||||||||||  |||||| || || ||||| ||||| |||||||||||||| |||||||      
T  13417063 taggattagaaataggttaaacttatctttttctgttggtgcaccaaac-gcggattgagtcaggatataataatttaatcatatcatgtatccttatca 13417161  T
Q  212 tgcgcaccaaacg 224  Q
    |||||||||||||    
T  13417162 tgcgcaccaaacg 13417174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 34731372 - 34731215
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    |||||||| | |||||||||||| | |||| |||||||    | ||||||||| |  |||||||| |  ||||| |||| | |||||||||||||||| |    
T  34731372 ctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcctttcctattggtgcaccaaacaagg 34731273  T
Q  165 gattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaa 222  Q
    |||| | | | ||||||||| ||| |||||||| | |||| ||||  |||||||||||    
T  34731272 gatttaaataggatatgatagtgttatcatatcctatctctttatcatgcgcaccaaa 34731215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 16290817 - 16290887
Alignment:
Q  152 gcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaa 222  Q
    ||||||||||| ||||| | ||| |||| |||||| | |||||||| |||||| |||| ||||||||||||    
T  16290817 gcaccaaacaaaggatttaaacaggataagataattttatcatatcctgtctctttatcctgcgcaccaaa 16290887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 26635273 - 26635391
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    ||||||||||||||||||||||||| ||||  ||||||| ||| |||||| ||  ||||||||||||| ||||||| |||||||||||||||||| ||||    
T  26635273 ctaacccaccaaaaactaaggataagaataataaaggaggagtaggatagaattggaaataggttaaatttatcatatcatgttggtgcaccaaaaaacg 26635372  T
Q  165 gattaagacaagatatgat 183  Q
    |||| || || ||||||||    
T  26635373 gattgagtcaggatatgat 26635391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 22203028 - 22202870
Alignment:
Q  66 taacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacgg 165  Q
    |||||||||||||   |||||| | |||| |||| |||  || ||||||||| | ||||||||||||||||||||||||| | |  ||| ||||||||||    
T  22203028 taacccaccaaaagtaaaggattaaaataacaaaagaggggtaggataggattaaaaataggttaaacttatcatttcatatggtcgcaacaaacaacgg 22202929  T
Q  166 attaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacg 224  Q
    |||  |||| |||| |||| | | |||||||| ||||||||||| ||||||||||||||    
T  22202928 attgggacacgataggatattctgatcatatcctgtctccttatcctgcgcaccaaacg 22202870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 19181425 - 19181564
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    |||| ||||||||||||||||| || ||||  ||||||  ||| ||||||||| ||||||||||| || ||||||| |||||||||||||||||||||      
T  19181425 ctaatccaccaaaaactaaggacaaaaataataaaggatgagtaggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaacaata 19181524  T
Q  165 gattaagacaagatatgataatgtaatcatatcatgtctc 204  Q
    ||||    || |||| |||||| | |||||||||||||||    
T  19181525 gattggatcaggataggataattttatcatatcatgtctc 19181564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 45413782 - 45413901
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    ||||||||||||||||||||||||| |||| ||||||  |  | |||||||||| |||||||||| || ||||| |||| | |||||||||||||||||     
T  45413782 ctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcctttcctattggtgcaccaaacaacc 45413881  T
Q  165 gattaagacaagatatgata 184  Q
    |||| |  ||||||||||||    
T  45413882 gattgaatcaagatatgata 45413901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 35320723 - 35320584
Alignment:
Q  70 ccaccaaaaactaaggataataatatcaaag-gagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggatt 168  Q
    |||||||||||||||||| | |||| ||||| |||| ||| |||||||| | |||||||||||||||||| |||||||||| |||| ||||||||  |||    
T  35320723 ccaccaaaaactaaggattaaaataacaaagtgaga-gtgagataggattaaaaataggttaaacttatcctttcatgttgctgcagcaaacaacttatt 35320625  T
Q  169 aagacaagatatgataatgtaatcatatcatgtctccttat 209  Q
    ||| || |||  |||| | |||||||||  |||||||||||    
T  35320624 aagccatgatgagatattttaatcatatattgtctccttat 35320584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 24155290 - 24155193
Alignment:
Q  46 taatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttc 143  Q
    ||||||| ||||||||| ||| |||||||||||||||||||| | ||||||||| |   ||| ||||||||| |||||||| || || ||||||||||    
T  24155290 taatcatgataggataactctgacccaccaaaaactaaggatgaaaatatcaaatgctgagtaggataggattagaaatagctttaagttatcatttc 24155193  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 26183713 - 26183660
Alignment:
Q  109 ggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaa 162  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||| |||||||    
T  26183713 ggataggattagaaatatgttaaacttatcatttcctgttggtgcatcaaacaa 26183660  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 26635551 - 26635598
Alignment:
Q  176 gatatgataatgtaatcatatcatgtctccttattctgcgcaccaaac 223  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  26635551 gatatgataatctaatcatatcatgtctccttatcatgcgcaccaaac 26635598  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 223
Target Start/End: Original strand, 42964462 - 42964616
Alignment:
Q  67 aacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacgga 166  Q
    ||||||||||||||||||||| | |||| || || |||  | |||||||||||| ||| |||| || ||||| |||| | |||||||| |||| | ||||    
T  42964462 aacccaccaaaaactaaggattaaaataacagagtaga--taggataggataagtaatgggtttaaattatcctttcctattggtgcaacaaataccgga 42964559  T
Q  167 ttaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaac 223  Q
    ||    || |||| |||| | | |||||||| ||||| ||||| |||||||||||||    
T  42964560 tttcagcaggataggatagttttatcatatcctgtctgcttatcctgcgcaccaaac 42964616  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 55945708 - 55945803
Alignment:
Q  109 ggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctc 204  Q
    ||||||||| |||||||| ||  | ||||| |||| | |||||||||||||||||||||| ||  | | || |||| | |||||||||||||||||    
T  55945708 ggataggattagaaatagattggatttatcctttcctattggtgcaccaaacaacggattgaggaagggtaggatattttaatcatatcatgtctc 55945803  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 33451425 - 33451327
Alignment:
Q  66 taacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    ||||||| |||||||||||||| |||||  |||||||  | | |||||| |  || |||||||| |  ||||||| |||| ||||||||||||||||||    
T  33451425 taacccatcaaaaactaaggattataattacaaaggatgaataggatagaagtagtaataggtttattttatcatatcatattggtgcaccaaacaacg 33451327  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 29539257 - 29539212
Alignment:
Q  54 ataggataattctaacccaccaaaaactaaggataataatatcaaa 99  Q
    |||||||||||||||||||||||||| || |||||| |||| ||||    
T  29539257 ataggataattctaacccaccaaaaattagggataaaaataacaaa 29539212  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 34666468 - 34666339
Alignment:
Q  109 ggataggataagaaataggttaaacttatcatttc----atgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctc 204  Q
    ||||| ||| ||||||||||| || ||||||||||    || ||| |||||||||||||| ||| |  |||||||||||| |   |||||||  |||||     
T  34666468 ggatatgattagaaataggtttaagttatcatttcctatatattgctgcaccaaacaacgtattgaagcaagatatgatagttgtatcatattctgtctt 34666369  T
Q  205 cttattctgcgcaccaaacgaaccgtaaag 234  Q
    ||||| ||| |||||||||| ||| |||||    
T  34666368 cttatcctgtgcaccaaacggaccctaaag 34666339  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 48936324 - 48936449
Alignment:
Q  76 aaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaa 175  Q
    |||||||||||||| |||| |||||||||||| ||||||||| | ||| ||||| || |||||  ||| |||||||||||||||||||||||| | |||     
T  48936324 aaaactaaggataaaaataacaaaggagaagtaggataggattaaaaacaggtttaaattatc--ttcctgttggtgcaccaaacaacggattgaaacag 48936421  T
Q  176 gatatgataatgtaatcatatcatgtct 203  Q
    ||||||||| | | |||||||| |||||    
T  48936422 gatatgatagtcttatcatatcctgtct 48936449  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 32491006 - 32490847
Alignment:
Q  65 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 164  Q
    |||||||| | |||||||||||| | |||| |||||||    | |||||| || || ||||||||    ||||| |||||| |||||||||||||||| |    
T  32491006 ctaacccagctaaaactaaggattaaaataacaaaggattgataggatagaattagcaataggtttcgattatcctttcatattggtgcaccaaacaaag 32490907  T
Q  165 gattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacg 224  Q
    |||| | | |  |||||||| ||| |||||||| |||||| |||| ||||||||||||||    
T  32490906 gatttaaatagaatatgatagtgttatcatatcctgtctctttatcctgcgcaccaaacg 32490847  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 44764024 - 44764111
Alignment:
Q  8 gatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataata 94  Q
    ||||||| ||||||||||| |||||  ||||| || | |||||||| ||||||||||||||| || ||||||||||||||||| ||||    
T  44764024 gatgaatggagagaaagggtaaaataagaattttaatactaatcatgataggataattctaatccgccaaaaactaaggataaaaata 44764111  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 45818620 - 45818783
Alignment:
Q  71 caccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaa 170  Q
    ||||||||||||||||||| || | ||||| |  | || ||||||||||  |||||||| |  ||||| |||  |  || |||||||||||||||||| |    
T  45818620 caccaaaaactaaggataaaaacaacaaagaatgaatgagataggataaacaataggtttattttatcttttgctactgatgcaccaaacaacggattta 45818719  T
Q  171 gacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacgaaccgtaaag 234  Q
       | ||||||||| ||| |||||||| ||||| ||||| || ||||||||||| ||| |||||    
T  45818720 agtaggatatgatagtgttatcatatcctgtcttcttatccttcgcaccaaacggaccctaaag 45818783  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 39795333 - 39795414
Alignment:
Q  147 ttggtgcaccaaacaacggattaagacaagatatgataatgtaatcatatcatgtctccttattctgcgcaccaaacgaacc 228  Q
    |||||||||||||||||  ||| |   | ||||||||| ||| |||||||||||||||  ||| ||||||||||||| ||||    
T  39795333 ttggtgcaccaaacaacatatttaagtaggatatgatagtgttatcatatcatgtctctctatcctgcgcaccaaacaaacc 39795414  T

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