View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_high_19 (Length: 355)
Name: NF4667_high_19
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_high_19 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 24426570 - 24426327
Alignment:
| Q |
8 |
aagcaaagggtatctcaaattggtttttgaacaagcaatttcatagctgacgcatggatgaaaatacgaaagtggttggtcatttaagtactctgaatga |
107 |
Q |
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| T |
24426570 |
aagcaaagggtatctcaaattagtttttgaacgagcaatttcatagcttacgcatggatgaaaatacgaaagtggttggtcatttaagtactctgaatga |
24426471 |
T |
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| Q |
108 |
tattatcttcgaattagaaactatttgaatgaatattgaaaaacgaagataaagcgtaaagactcatataatcttgttctaccttttcctctataatcat |
207 |
Q |
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| T |
24426470 |
tattatcttcgaattagaaactatttgagtgaatattgaaaaacgaagataaagcgtaaagactcatataatcttgttctaccttttcctctataatcat |
24426371 |
T |
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| Q |
208 |
aagcaatgtataacttcttcaacatgtacattttcaaccaacac |
251 |
Q |
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| T |
24426370 |
aagcaatgtaggacttcttcaacatgtacattttcaaccaacac |
24426327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 34980281 - 34980218
Alignment:
| Q |
188 |
accttttcctctataatcataagcaatgtataacttcttcaacatgtacattttcaaccaacac |
251 |
Q |
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| T |
34980281 |
acctcttcctttataattctaagcaatgtaagacttctttaacatgtatattttcaaccaacac |
34980218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 23038132 - 23038210
Alignment:
| Q |
173 |
atataatcttgttctaccttttcctctataatcataagcaatgtataacttcttcaacatgtacattttcaaccaacac |
251 |
Q |
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| T |
23038132 |
atatagtcttgttctaccttttcttttaaagttttatgcaatgtgaaacttcatcaacatgtatattttcaaccaacac |
23038210 |
T |
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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 12289 - 12385
Alignment:
| Q |
44 |
aatttcatagctgacgcatggatgaaaatacgaaagtggttggtcatttaagtactctgaatgatattatcttcgaattagaaactatttgaatgaa |
140 |
Q |
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| T |
12289 |
aatttcatagctaacgcatggaagaaaatatgaaaatatatgatcatataagtactttaaatggtattgtctctgaattagaaattattggaatgaa |
12385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 22189546 - 22189590
Alignment:
| Q |
207 |
taagcaatgtataacttcttcaacatgtacattttcaaccaacac |
251 |
Q |
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| T |
22189546 |
taagcaatgtgtgacttcttcaatatgtatattttcaaccaacac |
22189590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 26703309 - 26703385
Alignment:
| Q |
172 |
catataatcttgttctaccttttcctctataatcataagcaatgtataacttcttcaacatgtacattttcaaccaa |
248 |
Q |
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| T |
26703309 |
catatagtcttgatctccctatttctttacaattataagcaatgtgagacttcttcaacatgtatattttcaaccaa |
26703385 |
T |
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