View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_high_20 (Length: 339)
Name: NF4667_high_20
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 43364222 - 43364534
Alignment:
| Q |
11 |
cagagaaagtctgaatatcattaagtgtaggaaaaatactgtcctaatagaaaccaactacatggaataaattaagcacatgagactagctagaagaatc |
110 |
Q |
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| T |
43364222 |
cagagaaagtctgaatatcaataagtgtaggaaaaatactgtcctaatagaaaccaactacatggaataaattaagcacatgagactagctagaagaatc |
43364321 |
T |
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| Q |
111 |
tcgcgccctaataaactagcttaccttcttccagctagaatcttagccatgttcccattgttgtttgttacgaaaacatcgctgtcatcacaaactatgt |
210 |
Q |
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| T |
43364322 |
tcacgccctaataaactagcttaccttcttccagctagaatcttagccatgttcccattgttgtttgttacgaaaacatcgctgtcatcacaaactatgt |
43364421 |
T |
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| Q |
211 |
aatcaagcgcagccatgcgcgaagagaaagacacaaatggggccaactccttcttggtagctacggtctcctttgaatggaagttggggaagagagctct |
310 |
Q |
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| T |
43364422 |
aatcaagcgcagccatgcgcgaagagaaagacacaaatggggccaactccttcttggtagctacggtctcctttgaatggaagttggggaagagagctct |
43364521 |
T |
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| Q |
311 |
gaggggtgctagg |
323 |
Q |
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| T |
43364522 |
gaggggtgctagg |
43364534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 3896701 - 3896620
Alignment:
| Q |
130 |
cttaccttcttccagctagaatcttagccatgttcccattgttgtttgttacgaaaacatcgctgtcatcacaaactatgta |
211 |
Q |
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| T |
3896701 |
cttaccttcgaccagctagaatcttggccatgttgccattgttgttagtaacaaatacatcactttcatcacaaacaatgta |
3896620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 53862714 - 53862817
Alignment:
| Q |
132 |
taccttcttccagctagaatcttagccatgttcccattgttgtttgttacgaaaacatcgctgtcatcacaaactatgtaatcaagcgcagccatgcgcg |
231 |
Q |
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||||||| ||| |||| || ||||||||||| |||||||| || || || || || ||||| ||||||||||| || ||||||| ||||||||||| | |
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| T |
53862714 |
taccttcgtccggctaatattttagccatgttaccattgttattggtgacaaacacgtcgctttcatcacaaacaataaaatcaagggcagccatgcgag |
53862813 |
T |
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| Q |
232 |
aaga |
235 |
Q |
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|||| |
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| T |
53862814 |
aaga |
53862817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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