View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_high_26 (Length: 305)
Name: NF4667_high_26
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 37305600 - 37305522
Alignment:
| Q |
1 |
acaaaccccatcagttaaatttcatgtatattttccttaattatcaaatatattatctatttcctcttaaacaaaatata |
80 |
Q |
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| T |
37305600 |
acaaaccccatcagttaaatttcatgtatattt-ccttacttatcaaatatattatctatttcctcttaaacaaaatata |
37305522 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 6776024 - 6776101
Alignment:
| Q |
81 |
gagtttaattgtaatgcactcacagtgtaaaaaacagtttacacaatcatccaataacaacctgccacatcattttctc |
159 |
Q |
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| T |
6776024 |
gagtttaattgtagtgcactgacagtgtaaagat-agtttacacagtcatccaataacaatctgccacatcatcttctc |
6776101 |
T |
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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 6776352 - 6776275
Alignment:
| Q |
81 |
gagtttaattgtaatgcactcacagtgtaaaaaacagtttacacaatcatccaataacaacctgccacatcattttctc |
159 |
Q |
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| T |
6776352 |
gagtttaattgtagtgcactgacagtgtaaagat-agtttacacagtcatccaataacaatctgccacatcatcttctc |
6776275 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 818599 - 818514
Alignment:
| Q |
73 |
aaaatatagagtttaattgtaatgcactcacagtgtaaaaaacagtttacacaatcatccaataacaacctgccacatcattttctc |
159 |
Q |
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| T |
818599 |
aaaataaagagtttaattgtagtgcattgacagtgtaaagat-agtttacacagtcatccaataacaatttgccacatcatcttctc |
818514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 817912 - 817991
Alignment:
| Q |
79 |
tagagtttaattgtaatgcactcacagtgtaaaaaacagtttacacaatcatccaataacaacctgccacatcattttctc |
159 |
Q |
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| T |
817912 |
tagagtttaattgtagttcactgacagtgtaaagat-agattacacagtcatccaataacaatctgccacatcatcttctc |
817991 |
T |
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