View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_high_38 (Length: 247)
Name: NF4667_high_38
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8719749 - 8719986
Alignment:
| Q |
1 |
tcatttggaaatagctttccattgatctcaaaatgacctccattatcttgaacaagaccttctttcttatcttgagtcttatgtgcgcnnnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719749 |
tcatttggaaatagctttccattgatctcaaaatgacctccattatcttgaacaagaccttctttcttatcttgagtcttatgtgcgctttttatttttt |
8719848 |
T |
|
| Q |
101 |
naatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaatattgacctgtcaaaattattgaacaataaagtaaacttagtacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719849 |
taatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaatattgacctgtcaaaattattgaacaataaagtaaacttagtacca |
8719948 |
T |
|
| Q |
201 |
tcatatacttagtaccatcataaaatttatagtataat |
238 |
Q |
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|||||||||||||| |||||||||||||||| |||||| |
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| T |
8719949 |
tcatatacttagtaacatcataaaatttataatataat |
8719986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 8674789 - 8674897
Alignment:
| Q |
102 |
aatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaatattgacctgtcaaaattattgaacaataaagtaaacttagtaccat |
201 |
Q |
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||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8674789 |
aatagcataaatttgctcatctgttaatttcacctcagttatatgagtcaaaatattaacctgtcaaaattattgaacaataaagtaaacttagtaccat |
8674888 |
T |
|
| Q |
202 |
catatactt |
210 |
Q |
| |
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| ||||||| |
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| T |
8674889 |
cttatactt |
8674897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 8591977 - 8592076
Alignment:
| Q |
102 |
aatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaatattgacctgtcaaaattattgaacaataaagtaaacttagtaccat |
201 |
Q |
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| T |
8591977 |
aatagcacaaagttgatcttcagttaatttcacctcagttatatgagtcagaatgtttacctgtcaaagttattgaacaataaagtaaatttagtaccat |
8592076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8673456 - 8673520
Alignment:
| Q |
1 |
tcatttggaaatagctttccattgatctcaaaatgacctccattatcttgaacaagaccttcttt |
65 |
Q |
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|||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||| |
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| T |
8673456 |
tcatttagaaatagctttcctttgatcttaaaaggacctccattatcttgaacaagaccctcttt |
8673520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 23437951 - 23437893
Alignment:
| Q |
102 |
aatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaatattga |
160 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23437951 |
aatagcataaagttgttcatctgttaatttcacctcagttatatgagtcaaaatattga |
23437893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 23439438 - 23439372
Alignment:
| Q |
1 |
tcatttggaaatagctttccattgatctcaaaatgacctccattatcttgaacaagaccttctttct |
67 |
Q |
| |
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|||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
23439438 |
tcatttggaaatagctttgctttgatctcaaaaggacctccattatcttgaacaagaccctctttct |
23439372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 5116746 - 5116802
Alignment:
| Q |
125 |
ttaatttcacctcacttatatgagtcaaaatattgacctgtcaaaattattgaacaa |
181 |
Q |
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||||||| ||||||||| |||||||||||||||| |||| | || |||||||||||| |
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| T |
5116746 |
ttaattttacctcacttgtatgagtcaaaatattcacctatgaacattattgaacaa |
5116802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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