View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4667_high_43 (Length: 237)
Name: NF4667_high_43
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_high_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37305779 - 37305993
Alignment:
| Q |
1 |
tttaaagtaatacatagtaggnnnnnnnctcagaaactactgcatcacgtaattaaatcacaacatcactagatatgaagttttgaaaatatgctgcagt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37305779 |
tttaaagtaatacatagtaggaaaaaaactcagaaactactgcatcac-----taaatcacaacatcactagatatgaagttttgaaaatatgctgcagt |
37305873 |
T |
|
| Q |
101 |
aaaaagaagcgaacaatg---gnnnnnnnnnnnnnntcatatgtttgatattaaacaaacaattatgttaaacgaatgacataaatcaaactgagacgtt |
197 |
Q |
| |
|
||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
37305874 |
aaaaaaaagcgaaaaatgaaaataaaaaataaaaaatcatatgtttgatattaaacaaacaattatgttaaacgaatggcataaat-----tgagacgtt |
37305968 |
T |
|
| Q |
198 |
cttcaacagttcaaccgatgaaaat |
222 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37305969 |
cttcaacagttcaaccgatgaaaat |
37305993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University