View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4667_high_48 (Length: 234)
Name: NF4667_high_48
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 25229096 - 25228884
Alignment:
| Q |
19 |
gagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25229096 |
gagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcat |
25228997 |
T |
|
| Q |
119 |
tgagaccagaaagagccatcactgagcatggagcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25228996 |
tgagaccagaaagagccatcactgagcatggagtagaagttctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacg |
25228897 |
T |
|
| Q |
219 |
ttgagttcaatat |
231 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25228896 |
ttgagttcaatat |
25228884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 25217283 - 25217071
Alignment:
| Q |
19 |
gagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25217283 |
gagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcat |
25217184 |
T |
|
| Q |
119 |
tgagaccagaaagagccatcactgagcatggagcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
25217183 |
tgagaccagaaagagccatcactgagcatggagtagaagttctttcatttgatttttgtgccatccgtagtgatagagatcgtgatgattggtggctacg |
25217084 |
T |
|
| Q |
219 |
ttgagttcaatat |
231 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
25217083 |
ttaagttcaatat |
25217071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 25233823 - 25233611
Alignment:
| Q |
19 |
gagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25233823 |
gagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcat |
25233724 |
T |
|
| Q |
119 |
tgagaccagaaagagccatcactgagcatggagcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
25233723 |
tgagaccagaaagagccatcactgagcatggagtagaagttctttcatttgatttttgtgccatccgtagtgatagagatcgtgatgattggtggctacg |
25233624 |
T |
|
| Q |
219 |
ttgagttcaatat |
231 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
25233623 |
ttaagttcaatat |
25233611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 25225775 - 25225733
Alignment:
| Q |
19 |
gagattagtgtattgagatgtgatcatatgtatcacaaacatt |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25225775 |
gagattagtgtattgagatgtgatcatatgtatcacaaacatt |
25225733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 17157412 - 17157617
Alignment:
| Q |
19 |
gagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcat |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||| |
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|
| T |
17157412 |
gagattagtgtattgagatgtgaccatatgtatcacaaatattgtttagataaatggattagtttcaagaaccacacttgtcccctttgcagagaatcat |
17157511 |
T |
|
| Q |
119 |
tgagaccagaaagagccatcactgagcatggagcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacg |
218 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
17157512 |
tgagaccagaaagggccatcactgagcttggagctgaaattctttcatttaatttttgtgtcatccatagtgatcgagatcgtgatgattggtggctacg |
17157611 |
T |
|
| Q |
219 |
ttgagt |
224 |
Q |
| |
|
|||||| |
|
|
| T |
17157612 |
ttgagt |
17157617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 17161334 - 17161539
Alignment:
| Q |
19 |
gagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcat |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
17161334 |
gagattagtgtattgagatgtgaccatatgtatcacaaatattgtttagataaatggattagtttcaagaaccacacttgtcccctttgcagagaatcat |
17161433 |
T |
|
| Q |
119 |
tgagaccagaaagagccatcactgagcatggagcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacg |
218 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||||| || |
|
|
| T |
17161434 |
tgagaccagaaagggccatcactgagcttggagctgaaattctttcatttaatttttgtgtcatccatagtgatcgagatcgtgatgattggtggctgcg |
17161533 |
T |
|
| Q |
219 |
ttgagt |
224 |
Q |
| |
|
|||||| |
|
|
| T |
17161534 |
ttgagt |
17161539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 17164378 - 17164582
Alignment:
| Q |
19 |
gagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcat |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
17164378 |
gagattagtgtattgagatgtgaccatatgtaccacaaatattgtttagataaatggattggtttcaagaaccacacttgtcccctttgtagagaatcat |
17164477 |
T |
|
| Q |
119 |
tgagaccagaaagagccatcactgagcatggagcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacg |
218 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||| |||||||| |
|
|
| T |
17164478 |
tgagaccagaaagggccatcactgagcttggagctgaaattctttcatttaatttttgtgtcatccgtaatgatcgagatcgtgatgatttttggctacg |
17164577 |
T |
|
| Q |
219 |
ttgag |
223 |
Q |
| |
|
||||| |
|
|
| T |
17164578 |
ttgag |
17164582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 28153348 - 28153550
Alignment:
| Q |
22 |
attagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattga |
121 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||| ||||||| ||||||||| || | ||||| ||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
28153348 |
attagagtattaaggtgtgatcatatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgccctctttgcagagaatcattga |
28153447 |
T |
|
| Q |
122 |
gaccagaaagagccatcactgagcatggagcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttg |
221 |
Q |
| |
|
||||| | ||||| |||||||||| |||||| ||| ||||| |||| |||||| |||||||||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
28153448 |
gaccaaagagagctatcactgagcttggagctgaagttcttgaatttaattttttcgccattcgtaaggatcgcgatcgtgatgattggtggctacgctg |
28153547 |
T |
|
| Q |
222 |
agt |
224 |
Q |
| |
|
||| |
|
|
| T |
28153548 |
agt |
28153550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 28148693 - 28148894
Alignment:
| Q |
22 |
attagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattga |
121 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||| ||||||| ||||||||| || | ||||| ||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
28148693 |
attagagtattaaggtgtgatcatatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgccctctttgcagagaatcgttga |
28148792 |
T |
|
| Q |
122 |
gaccagaaagagccatcactgagcatggagcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttg |
221 |
Q |
| |
|
||||| | |||||||||||||||| |||||| ||| ||||| |||| |||||| ||||||||||| ||||| |||| ||||||||||||| ||||||| |
|
|
| T |
28148793 |
gaccaaagagagccatcactgagcttggagctgaagttcttgaatttaatttttttgccattcgtaaggatcgtgatcatgatgattggtggttacgttg |
28148892 |
T |
|
| Q |
222 |
ag |
223 |
Q |
| |
|
|| |
|
|
| T |
28148893 |
ag |
28148894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 26399391 - 26399186
Alignment:
| Q |
19 |
gagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcat |
118 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||| | | ||||||| |||| |||| || ||||||||||| | |||||||| ||||| |||||||||| |
|
|
| T |
26399391 |
gagattagagtattgaggtgtgatcatatgtttcatagatattgtttggatagatgggttggtttcaagaacaacacttgtccactttgcagagaatcat |
26399292 |
T |
|
| Q |
119 |
tgagaccagaaagagccatcactgagcatggagcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacg |
218 |
Q |
| |
|
||||| ||| ||| ||||||||||||| ||||| || ||||||||||| |||||||| ||| |||||||||||| | ||||||||||||| |||| |
|
|
| T |
26399291 |
tgagatcaggaagggccatcactgagcttggagttgatgttctttcatttaatttttgtaatatttatagtgatcgagaacatgatgattggtggttacg |
26399192 |
T |
|
| Q |
219 |
ttgagt |
224 |
Q |
| |
|
|||||| |
|
|
| T |
26399191 |
ttgagt |
26399186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 19317454 - 19317563
Alignment:
| Q |
22 |
attagtgtattgagatgtgatcatatgtatcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattga |
121 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| | ||||||||| ||||||||| || |||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
19317454 |
attagagtattgaagtgtgatcatatgtatcatagacattgtttggataaatgggttgctttcaaaaaccacacttgtcctctttgtagagaatcattga |
19317553 |
T |
|
| Q |
122 |
gaccagaaag |
131 |
Q |
| |
|
|||||||||| |
|
|
| T |
19317554 |
gaccagaaag |
19317563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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