View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4667_low_10 (Length: 426)
Name: NF4667_low_10
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 417
Target Start/End: Complemental strand, 16963405 - 16962989
Alignment:
| Q |
15 |
aaaatttccatcttgcattgattctacgttgtcgttgaatcggacaatagtttattctggtaattgtttgtctgcaagatatgtcagtgatcaacattca |
114 |
Q |
| |
|
|||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
16963405 |
aaaattgccatcatgcattgattcgacattgtcgttgaatcgaacaatagtttattctggtaattgtttatcagcaagaaatgtcagtgatcaacattca |
16963306 |
T |
|
| Q |
115 |
tcttcacattgcaagaatttaacagtgttagccgctaaggcaagatttcagaagccgaaaaaatcagagatgcaactaggagtattatttggtattattg |
214 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| | |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
16963305 |
tcttcacattgcaagaattcaacggtgttagccgctaagccgagatttgagaagccgaaaaaatcaatgatgcagctaggagtattatttggtattattg |
16963206 |
T |
|
| Q |
215 |
ga------------attgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcagaaagagaagatagatctgttgatatttcaag |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16963205 |
gaggttttgttggaattgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcagaaagagaagatagatctgttgatatttcaag |
16963106 |
T |
|
| Q |
303 |
agaatcaagactaaatatttatgcaagtaaggccataattacatacacataaacatttcatat--tagtgcacaagttaaatttagatcatatttttcat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16963105 |
agaatcaagactaaatatttatgcaagtaaggccataattacatacacataaacatttcatattgtagtgcacaagttaaatttagatcatatttttcat |
16963006 |
T |
|
| Q |
401 |
ttcatattagtcctttg |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
16963005 |
ttcatattagtcctttg |
16962989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 31 - 342
Target Start/End: Complemental strand, 16216130 - 16215792
Alignment:
| Q |
31 |
attgattctacgttgtcgttgaatcggacaatagtttattctggtaattgtttgtctgcaagatatgtcagtgatcaacattcatcttcacattgcaaga |
130 |
Q |
| |
|
|||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
16216130 |
attgattcgacgttgtcggttaatcgaacaatagtttattctggtaattgtttgtcagcaagaaatatcagtgatcaacattcatcttcacattgcaaga |
16216031 |
T |
|
| Q |
131 |
atttaacagtgttagccgctaaggcaagatttcagaagccgaaaaaatcagagatgcaactaggagtattatttggtattattgg------------aat |
218 |
Q |
| |
|
||| |||||||||||||||| || | |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16216030 |
attcaacagtgttagccgctgagacgagatttgataagccgaaaaaatcaatgatgcaactaggagtattatttggtattattggaggttttgttgtaat |
16215931 |
T |
|
| Q |
219 |
tgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcagaaagagaag---------------atagatctgttgatatttcaaga |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16215930 |
tgtagggcttttgattctactctttctgttcattttgagaaagtctaaagcagaaagagaagatagtaaaatagatcatagatctgttgatatttcaaga |
16215831 |
T |
|
| Q |
304 |
gaatcaagactaaatatttatgcaagtaaggccataatt |
342 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
16215830 |
gaatcaagaccaaatatttatgcaagtaaggccacaatt |
16215792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 48892080 - 48892027
Alignment:
| Q |
214 |
ggaattgtagggcttttgattctactctttctgttcattttgagaaagtccaaa |
267 |
Q |
| |
|
||||||| ||||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
48892080 |
ggaattgcagggcttttgattatattttttctgttcattttgagaaagtccaaa |
48892027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University