View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4667_low_11 (Length: 416)
Name: NF4667_low_11
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 53453894 - 53453508
Alignment:
| Q |
11 |
cataggtaacacacaaagtaagacatcttcgtagttagtgtattggtgtggattttcaccgtcaactaactgtgatattgttgtaactaaattttcatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53453894 |
cataggtaacacacaaagtaagacatcttcgtagttagtgtattggtgtggattttcaccgtcaactaactgtgatattgttgtaactaaattttcatgt |
53453795 |
T |
|
| Q |
111 |
gttaacataacaccttttggtaaaccagaagttcctgaagaaaacggtaacgcaaccacgtcgtttgggtttattttaacttctggtaattcgttttcat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
53453794 |
gttaacataacaccttttggtaaaccagaagttcctgaagaaaacggtaacgcaactacatcgtttgggtttatttttacttctggtaattcgttttcat |
53453695 |
T |
|
| Q |
211 |
cagcatttgttaaagcagaaaagttcacaacatgttcatcttcctccggtgatgaatcaatgcacacgattttgatgtcgttgagttttgcgaaatcatt |
310 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
53453694 |
cagcatttgttaaaacagaaaaatccacaacattttcatcttcctccggtgatgaatcaatgcacacgattttgatgtcgatgagttttgcgaaatcgtt |
53453595 |
T |
|
| Q |
311 |
gattttattgagatacgcggattgtgttatgatgagtttagattttgttgcggtggcttgtttagcgagctccgatgaggtgtagaa |
397 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53453594 |
gattttattgagatatacggattgtgttatgatgagtttagattttgttgcggtggcttgtttagcgagctccgatgaggtgtagaa |
53453508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University