View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667_low_12 (Length: 406)

Name: NF4667_low_12
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667_low_12
NF4667_low_12
[»] chr2 (3 HSPs)
chr2 (20-393)||(14218731-14219105)
chr2 (81-374)||(34680971-34681257)
chr2 (84-215)||(38327413-38327543)
[»] chr3 (6 HSPs)
chr3 (81-298)||(40574254-40574471)
chr3 (81-385)||(52653733-52654038)
chr3 (84-368)||(33709792-33710077)
chr3 (80-216)||(31362265-31362401)
chr3 (99-200)||(16729756-16729857)
chr3 (20-60)||(33709712-33709752)
[»] chr5 (12 HSPs)
chr5 (84-382)||(29006447-29006746)
chr5 (85-382)||(9851300-9851596)
chr5 (135-385)||(9080505-9080755)
chr5 (270-364)||(15205481-15205576)
chr5 (87-186)||(26900465-26900564)
chr5 (272-385)||(36203207-36203321)
chr5 (81-192)||(36203051-36203162)
chr5 (336-385)||(2022672-2022721)
chr5 (148-218)||(11042814-11042884)
chr5 (136-181)||(10498135-10498180)
chr5 (114-191)||(15205357-15205434)
chr5 (20-61)||(36203014-36203055)
[»] chr6 (2 HSPs)
chr6 (81-385)||(28612001-28612303)
chr6 (117-355)||(11931950-11932188)
[»] chr4 (9 HSPs)
chr4 (84-385)||(20251370-20251674)
chr4 (114-379)||(48779718-48779984)
chr4 (120-211)||(24391833-24391923)
chr4 (84-213)||(24129368-24129497)
chr4 (119-194)||(47078080-47078155)
chr4 (84-204)||(27538127-27538247)
chr4 (123-204)||(25328605-25328686)
chr4 (336-385)||(3415594-3415643)
chr4 (336-385)||(18670554-18670603)
[»] chr1 (9 HSPs)
chr1 (81-382)||(49053752-49054055)
chr1 (81-382)||(49061332-49061635)
chr1 (85-348)||(42263319-42263583)
chr1 (78-213)||(50059450-50059585)
chr1 (98-212)||(17458387-17458501)
chr1 (114-213)||(52282037-52282138)
chr1 (80-251)||(31285890-31286061)
chr1 (81-194)||(10917479-10917592)
chr1 (113-194)||(12634476-12634557)
[»] chr8 (5 HSPs)
chr8 (81-374)||(12729350-12729644)
chr8 (263-385)||(28695971-28696094)
chr8 (84-216)||(28696108-28696236)
chr8 (113-257)||(14546261-14546403)
chr8 (87-228)||(44729042-44729183)
[»] chr7 (12 HSPs)
chr7 (81-385)||(12239475-12239780)
chr7 (77-243)||(34091467-34091633)
chr7 (93-209)||(24870389-24870505)
chr7 (302-385)||(37469058-37469141)
chr7 (84-212)||(1840614-1840741)
chr7 (114-321)||(20463987-20464195)
chr7 (84-164)||(24871395-24871475)
chr7 (186-385)||(23757023-23757222)
chr7 (81-143)||(30108282-30108344)
chr7 (78-175)||(24533342-24533441)
chr7 (262-334)||(30276205-30276278)
chr7 (20-60)||(24870335-24870375)
[»] scaffold0007 (2 HSPs)
scaffold0007 (20-215)||(217650-217842)
scaffold0007 (330-382)||(217947-217999)


Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 14219105 - 14218731
Alignment:
Q  20 ataaatttctctataaatagaaacactttggaggcagaaaataattcnnnnnnntagg-acaaaaatcacattattgtgagtcaaaattatgctaaaaat 118  Q
    |||| |||||||||||||||| |||||||||  ||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||    
T  14219105 ataagtttctctataaatagagacactttggcagcagaaaataattcaaaaaaataggtacaaaaatcacattattgtgagtcaaaattatgctaaaaat 14219006  T
Q  119 aatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgtaca 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14219005 aatactaaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgtaca 14218906  T
Q  219 tgtcaagtcagtgattctataatatcctgaaggagattcattgatatactcttttgcatccagttgacataactggtgggacgaatcgaacctaaaagtt 318  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14218905 tgtcaagtcagtgattctatagtatcttgaaggagattcattgatatactcttttgcatccagttgacataactggtgggacgaatcgaacctaaaagtt 14218806  T
Q  319 agtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatcatcttcttcgagagta 393  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14218805 agtttgtctaacacacacttttaaatttatgtgcacttgtcatcatgttcaccttcatcatcttcttcgagagta 14218731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 34681257 - 34680971
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgt 180  Q
    ||||||||||| |||||||||||||||||||  ||||||| ||    | |||||||||||||||| ||| ||||| |||||||| | |||||||||  ||    
T  34681257 aaaatcacattcttgtgagtcaaaattatgccgaaaataacac---ctaattctttcttttctctggtgaacgagagaaattgacaaaactttattacgt 34681161  T
Q  181 aaactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatatactcttttgcatcca 280  Q
    |||||||||||||| |||||| ||| ||||||||| || ||||||      |||  ||| |||||||||   |||||  | |||||  |||||||| | |    
T  34681160 aaactatcattgatcgatacgcttgatgtgaatgtgcaagtcaag-----aatttcatagtatcctgaaaaggattcgcttatatatccttttgcaccta 34681066  T
Q  281 gttgacataactggtggga-cgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttc 374  Q
    |||| |||||||| ||||| | |||||||||||||||||||| |  |  |||||  |||| ||||| ||||||| |  |||||||||||| ||||    
T  34681065 gttggcataactgatgggagcaaatcgaacctaaaagttagtgtaccccacacatgcttttaaattcatgtgcagtcttcatcatgttcatcttc 34680971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 38327543 - 38327413
Alignment:
Q  84 atcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaa 183  Q
    |||||||||| |||||| |||| |||||| |||||||||  |||||||||| |  |||||||| |||| ||| |||||||  | ||||||||| ||||||    
T  38327543 atcacattatcgtgagtaaaaactatgctgaaaataatatgaaatcattctatactttctctactgca-gagagaaattgccaaaactttattatgtaaa 38327445  T
Q  184 ctatcattgatggatacgtttggtgtgaatgt 215  Q
     || ||||||| ||| ||||||||||||||||    
T  38327444 ttaccattgatcgatgcgtttggtgtgaatgt 38327413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 81 - 298
Target Start/End: Complemental strand, 40574471 - 40574254
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgt 180  Q
    ||||||||||| ||||||||||||||| |||  ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||    
T  40574471 aaaatcacattcttgtgagtcaaaattctgccgaaaataatattaaatcattctttcttttctctagtgcacgagagaaattgacagaactttattctgt 40574372  T
Q  181 aaactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatatactcttttgcatcca 280  Q
    |||||||||||||| |||||| || |||||||||| || |||| ||||  ||||| ||| |||||||||||  ||||  |||||| |  |||||||||||    
T  40574371 aaactatcattgattgatacgcttcgtgtgaatgtgcaagtcacgtcaaagattccatagtatcctgaaggtaattcgctgatatgccattttgcatcca 40574272  T
Q  281 gttgacataactggtggg 298  Q
     || |||| |||||||||    
T  40574271 attaacattactggtggg 40574254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 81 - 385
Target Start/End: Original strand, 52653733 - 52654038
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgt 180  Q
    ||||| ||||| ||||||||  ||||| |||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||    
T  52653733 aaaattacattgttgtgagtttaaattctgctgaaaattatactaaatcattcttacttttctctagtgcacgaggaaaattgacagaactttattctgt 52653832  T
Q  181 aaactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatat-actcttttgcatcc 279  Q
    |||||| ||||| | |||||  ||| ||||||||| || |||| ||||  ||||| ||  ||||||||||| |||||   | ||| ||  ||||||||||    
T  52653833 aaactaccattg-tcgatacacttgatgtgaatgtgcaagtcacgtcaaggattccattgtatcctgaaggggattcgccggtataaccattttgcatcc 52653931  T
Q  280 agttgacataactggtg-ggacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatca 378  Q
     |||| ||||||||||| || ||||| ||||||||| |||||| ||||  |||||| ||||| |||||||||||||   ||||||||||||  |||||||    
T  52653932 ggttggcataactggtgagggcgaattgaacctaaaggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcattttcatca 52654031  T
Q  379 tcttctt 385  Q
    |||||||    
T  52654032 tcttctt 52654038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 84 - 368
Target Start/End: Original strand, 33709792 - 33710077
Alignment:
Q  84 atcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaa 183  Q
    |||||||| | ||||||| ||||| |||  ||||| ||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||| ||||||    
T  33709792 atcacattctggtgagtctaaattttgccgaaaattatactaaatcattctttcttttctctagtgcaccagagaatttgacagaactttattctgtaaa 33709891  T
Q  184 ctatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagatt--cattgatatactcttttgcatccag 281  Q
    ||| ||||| | |||||| ||||||||||||| || |||| ||||  ||||||||  |||||| |||| ||||  |    |||||| ||||||||||| |    
T  33709892 ctaccattg-tcgatacgcttggtgtgaatgtgcaagtcacgtcaaggattctatcgtatcctaaaggggattagccggtatatacccttttgcatccgg 33709990  T
Q  282 ttgacataactggtgg-gacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttc 368  Q
    |||||||||||||||| |  ||||||| |||||| |||||| ||||  |||||| ||||| |||||| ||||||   |||||||||||    
T  33709991 ttgacataactggtggaggtgaatcgatcctaaaggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgttc 33710077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 31362401 - 31362265
Alignment:
Q  80 aaaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttg 179  Q
    |||||||||||| ||||||||||||||| ||   |||||||||||||||  || ||| |||| | |||||||||||| ||||||| ||||||||||||||    
T  31362401 aaaaatcacattcttgtgagtcaaaattctgtcgaaaataatactaaatttttttttattttttttagtgcacgaggaaaattgacagaactttattttg 31362302  T
Q  180 taaactatcattgatggatacgtttggtgtgaatgta 216  Q
    |||||||  || ||| |||||||||||||||||||||    
T  31362301 taaactactatcgatcgatacgtttggtgtgaatgta 31362265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 16729756 - 16729857
Alignment:
Q  99 gtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatggat 198  Q
    |||| |||| || ||||||||||| |||||||||||||||||| | |||||||||| | ||||||| | ||||||||||||||||||||||||||| |||    
T  16729756 gtcagaattttgttaaaaataatattaaatcattctttcttttatttagtgcacgaagaaaattgacataactttattttgtaaactatcattgatcgat 16729855  T
Q  199 ac 200  Q
    ||    
T  16729856 ac 16729857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 33709712 - 33709752
Alignment:
Q  20 ataaatttctctataaatagaaacactttggaggcagaaaa 60  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  33709712 ataagtttctctataaatagagacactttggaggcagaaaa 33709752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 84 - 382
Target Start/End: Original strand, 29006447 - 29006746
Alignment:
Q  84 atcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgt-aa 182  Q
    |||||||| ||||||||| ||||| |||||||||| |||||||||||||| ||||||| |||||||||||||  || |||| ||||||||||| ||| ||    
T  29006447 atcacattcttgtgagtctaaattctgctaaaaattatactaaatcattcattcttttttctagtgcacgagataagttgacagaactttattctgtaaa 29006546  T
Q  183 actatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatat-actcttttgcatccag 281  Q
    |||| ||||||  |||||| |||||||||||||  |||||| ||||  ||||| ||  ||| ||||||  |||||    |||| || ||||||||||  |    
T  29006547 actaacattga-cgatacgcttggtgtgaatgtgtatgtcatgtcaaggattccattgtattctgaagaggattcgccaatataacccttttgcatctgg 29006645  T
Q  282 ttgacataactggtgggacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatcatct 381  Q
    |||| | |||| ||||| |||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||  ||||||| |||| ||| |||||||    
T  29006646 ttgataaaactagtggggcgaatcgaacctaaaagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatcttgatcatct 29006745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 382
Target Start/End: Complemental strand, 9851596 - 9851300
Alignment:
Q  85 tcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaac 184  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| || |||  ||| | ||||||||| ||||||     
T  9851596 tcacattattgtgagtcaaaattctgccaaaaataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaa 9851497  T
Q  185 tatcattgatggatacgtttggtgtgaatgtacatgtca-agtcagtgattctataatatcctgaaggagattcattgatatactcttttgcatccagtt 283  Q
     | ||||| | |||||| ||||||||||||| ||  ||| | | ||| |||| ||  |||| |||||| |||||   | ||||| ||||||||| | |||    
T  9851496 caccattg-tcgatacgcttggtgtgaatgtgcaaatcacattaagt-attccatcgtatcttgaaggggattcgccggtatacccttttgcattcggtt 9851399  T
Q  284 gacataactggtgggacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatcatctt 382  Q
    | | |||||||| ||  |||| ||||||||| |||||| ||||  |||||| ||||| |||||||||||||   |||||||||||| ||||||||||||    
T  9851398 ggcttaactggtagggagaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctt 9851300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 135 - 385
Target Start/End: Complemental strand, 9080755 - 9080505
Alignment:
Q  135 ttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgatt 234  Q
    |||||||||||||| |||||| | |||||| ||||||||||||||||||||| |||||||  ||||||||  ||||||||| || || | ||||   |||    
T  9080755 ttcttttctctagtacacgagagcaattgagagaactttattttgtaaactaccattgatctatacgtttaatgtgaatgtgcaagttacgtcaagaatt 9080656  T
Q  235 ctataatatcctgaaggagattcattgatatactcttttgcatccagttgac-ataactggt-gggacgaatcgaacctaaaagttagtttgtctaacac 332  Q
    | | | |||| |||||| | ||| | | ||||||| |||||||| | ||||| | || |||| ||| |||||||||| ||||  ||||| ||| | ||||    
T  9080655 ccaaagtatcatgaagg-ggttcgtcggtatactcatttgcatctacttgacaaaaattggtgggggcgaatcgaacttaaagcttagtgtgt-tcacac 9080558  T
Q  333 acactttgaaatttatgtgcacttgtcatcatgttcaccttcatcatcttctt 385  Q
    || |||| |||||||||||| ||| | ||||||||||  |||||| |||||||    
T  9080557 actctttaaaatttatgtgccctttttatcatgttcattttcatcttcttctt 9080505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 15205481 - 15205576
Alignment:
Q  270 ttttgcatccagttgacataactggtggg-acgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcat 364  Q
    ||||||||||||| | ||||||||||||| ||||||||||||| ||||||||| ||||  |||||| |||||||||||||| |||||  |||||||    
T  15205481 ttttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcactcttcatcat 15205576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 26900465 - 26900564
Alignment:
Q  87 acattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaacta 186  Q
    ||||| ||||||||||||||| || | ||||||||||||||| | |||||||||||| |||| ||||||||||| ||| | || |||||||| |||||||    
T  26900465 acattcttgtgagtcaaaattttggtgaaaataatactaaattagtctttcttttctttagttcacgagggaaactgacaaaattttattttataaacta 26900564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 385
Target Start/End: Original strand, 36203207 - 36203321
Alignment:
Q  272 ttgcatccagttgacataactggtggg-acgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcac 370  Q
    |||||||| |||| ||||||||||||| ||||||||||| |||| |||||| || |  |||||| |  ||||||||||||||||   |||| |||||||     
T  36203207 ttgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaaatttatgtgcacaattcattatgttcat 36203306  T
Q  371 cttcatcatcttctt 385  Q
    |||||||||||||||    
T  36203307 cttcatcatcttctt 36203321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 36203051 - 36203162
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgt 180  Q
    |||||||||||  |||||||| ||||| |||  ||||| ||||||||| |||| |||| |||| ||||| ||||| ||| |||  |||||||||||||||    
T  36203051 aaaatcacattggtgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacgagagaatttgtcagaactttattttgt 36203150  T
Q  181 aaactatcattg 192  Q
    || ||| |||||    
T  36203151 aagctaccattg 36203162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 2022721 - 2022672
Alignment:
Q  336 ctttgaaatttatgtgcacttgtcatcatgttcaccttcatcatcttctt 385  Q
    ||||||||||||||||||| | |||||||||||| |||||||||||||||    
T  2022721 ctttgaaatttatgtgcacatttcatcatgttcatcttcatcatcttctt 2022672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 11042884 - 11042814
Alignment:
Q  148 tgcacgagggaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgtaca 218  Q
    |||| ||| ||||||||  ||||||||||||||||| |||||||||| |||||| ||| |||||| |||||    
T  11042884 tgcatgagagaaattgactgaactttattttgtaaattatcattgatagatacgcttgatgtgaaagtaca 11042814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 10498135 - 10498180
Alignment:
Q  136 tcttttctctagtgcacgagggaaattgaaagaactttattttgta 181  Q
    ||||||||||||||  |||| | |||||||||||||||||||||||    
T  10498135 tcttttctctagtgtgcgagagtaattgaaagaactttattttgta 10498180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 15205357 - 15205434
Alignment:
Q  114 aaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcatt 191  Q
    ||||||||||||||||||| | |||||||| ||||| || || |||||| | |  |||||||| | ||||||||||||    
T  15205357 aaaataatactaaatcattgtatcttttctttagtgaacaagagaaattaacatgactttattctctaaactatcatt 15205434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 36203014 - 36203055
Alignment:
Q  20 ataaatttctctataaatagaaacactttggaggcagaaaat 61  Q
    |||| |||||||||||||||| ||||||||||| ||||||||    
T  36203014 ataagtttctctataaatagagacactttggagacagaaaat 36203055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 81 - 385
Target Start/End: Complemental strand, 28612303 - 28612001
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgt 180  Q
    ||||||||||| ||||||||| ||||| |||  ||||| |||||||||||||||||||| ||||||||||||||||| |||||| ||||| || ||||||    
T  28612303 aaaatcacattcttgtgagtcgaaattctgccgaaaattatactaaatcattctttcttatctctagtgcacgaggggaattgacagaacattgttttgt 28612204  T
Q  181 aaactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatatactcttttgcatcca 280  Q
    | |||| ||||||  |||| | |||||||||||||||| |||| ||||  ||||| ||  ||| ||||||| |||||   |||||||  |||| ||| |     
T  28612203 atactaccattgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgtattctgaaggggattcgccgatataccattttacatact 28612104  T
Q  281 gttgacataactggt-gggacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatcat 379  Q
    ||||||||||||||| ||||  ||||||||||||| ||||   ||| |  |||||||||| ||||||||||||||   ||||||||||||  ||||||||    
T  28612103 gttgacataactggtggggaaaaatcgaacctaaaggtta---tgtgttccacacactttaaaatttatgtgcacacttcatcatgttcatattcatcat 28612007  T
Q  380 cttctt 385  Q
    ||||||    
T  28612006 cttctt 28612001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 355
Target Start/End: Original strand, 11931950 - 11932188
Alignment:
Q  117 ataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgta 216  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||| |||| |||| |||||| | ||||||| ||||| | ||||   |||||||||||       
T  11931950 ataatactatatcattctttcttttatctagtgcacgagagaatttgacagaattttattctataaactaccattg-tcgataaacttggtgtgaataag 11932048  T
Q  217 catgtcaagtcagtgattctataatatcctgaaggagattcattgatat-actcttttgcatccagttgacataactggt-gggacgaatcgaacctaaa 314  Q
    || ||||  |||  ||||  ||  ||||||||||| | |||  || ||| || ||||||||||| |||| ||||||| || ||| |||||| ||||||||    
T  11932049 caagtcacatcaaggatttcatcgtatcctgaagg-ggttcgctggtataacccttttgcatccggttggcataactagtgggggcgaatcaaacctaaa 11932147  T
Q  315 agttagtttgtctaacacacactttgaaatttatgtgcact 355  Q
     |||||| |||| ||||||  ||||||||||||||||||||    
T  11932148 ggttagtgtgtccaacacatgctttgaaatttatgtgcact 11932188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 84 - 385
Target Start/End: Original strand, 20251370 - 20251674
Alignment:
Q  84 atcacattattgtgagtc-aaaattatg-ctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgta 181  Q
    |||||||| ||||| ||| ||||||||| | ||||| |||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||| ||||    
T  20251370 atcacattcttgtgtgtctaaaattatgtcaaaaaaaaatactaaatcattatttcttttctgtagtgcacgagagaaattgacagaactttattatgta 20251469  T
Q  182 aactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggag-attcattgatatactcttttgcatcca 280  Q
    ||||||||||||| |||||  ||| |||||||||||| | ||  ||| |||||| || |||||||||||| | |||||    ||||| | |||||||||     
T  20251470 aactatcattgatcgatacacttgatgtgaatgtacaaggcacatcaatgattcaatcatatcctgaagggggattcaccagtatacccctttgcatccg 20251569  T
Q  281 gttgacataactggt-gggacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatcat 379  Q
    |||||||| ||| || ||| | ||| ||| |||||  ||||| |||||| ||||| |||||||||||||||| |||  |||||||||||| |||||||||    
T  20251570 gttgacattactagtaggggcaaatggaatctaaatattagtgtgtcta-cacacgctttgaaatttatgtgtactcttcatcatgttcatcttcatcat 20251668  T
Q  380 cttctt 385  Q
    ||||||    
T  20251669 cttctt 20251674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 114 - 379
Target Start/End: Complemental strand, 48779984 - 48779718
Alignment:
Q  114 aaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaat 213  Q
    ||||||||| |||||||||| || |||||||||||||||||   ||| ||| | ||||||||| | ||||||||||||||| |||| | |||||||||||    
T  48779984 aaaataatattaaatcattcattattttctctagtgcacgacataaactgacataactttattctctaaactatcattgattgatatgcttggtgtgaat 48779885  T
Q  214 gtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatatactcttttgcatccagttgacataactgg-tgggacgaatcgaaccta 312  Q
    || || |||| |||| |||||  ||| ||||||||||| ||||||  ||||||| |||||||||||| ||| |||||||||  | | |||||||||| ||    
T  48779884 gtgcaagtcacgtcaatgatttcatagtatcctgaaggggattcaccgatatacccttttgcatccaattggcataactggcagaggcgaatcgaacata 48779785  T
Q  313 aaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatcat 379  Q
    || |||||| | ||  |||||| ||||||||||||| |||||   |||||||||||| ||| |||||    
T  48779784 aaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctttatcat 48779718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 24391833 - 24391923
Alignment:
Q  120 atactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtga 211  Q
    |||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||| ||||||||||||||| | ||||||||||||||||    
T  24391833 atactaaatcattctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga 24391923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 24129497 - 24129368
Alignment:
Q  84 atcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaa 183  Q
    |||||||| ||||||||| |||||  |  ||||||||||||||||| |||||||||||||||||||||||   |||||||| | ||||||||| ||||||    
T  24129497 atcacatttttgtgagtctaaattccgtcaaaaataatactaaatctttctttcttttctctagtgcacggaagaaattgacataactttattatgtaaa 24129398  T
Q  184 ctatcattgatggatacgtttggtgtgaat 213  Q
    |||||||  |  ||| ||||||||||||||    
T  24129397 ctatcatcaaccgatgcgtttggtgtgaat 24129368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 47078155 - 47078080
Alignment:
Q  119 aatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgat 194  Q
    ||||||||||||||||||||||| | ||||| ||||| |||||||| ||||||||||| ||||||||| |||||||    
T  47078155 aatactaaatcattctttcttttttgtagtgtacgagagaaattgacagaactttattctgtaaactaacattgat 47078080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 27538247 - 27538127
Alignment:
Q  84 atcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaa 183  Q
    |||||||| ||||| || |||||| |||  |||||||||||||||||||||||  |||||||| ||||  || |||||||| | ||||| ||| ||||||    
T  27538247 atcacattcttgtgggtgaaaattctgccgaaaataatactaaatcattctttaatttctctaatgcataagagaaattgacataacttaattctgtaaa 27538148  T
Q  184 ctatcattgatggatacgttt 204  Q
    |  |||||||| |||| ||||    
T  27538147 cggtcattgatcgatatgttt 27538127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 25328686 - 25328605
Alignment:
Q  123 ctaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatggatacgttt 204  Q
    ||||||||||  |||||||||||| ||||  || | |||||| |||| ||||||||||||||||||| || | |||||||||    
T  25328686 ctaaatcatttcttcttttctctaatgcagtagagtaattgagagaaatttattttgtaaactatcactgtttgatacgttt 25328605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 3415594 - 3415643
Alignment:
Q  336 ctttgaaatttatgtgcacttgtcatcatgttcaccttcatcatcttctt 385  Q
    ||||| |||||||||||||   |||||||||||| |||||||||||||||    
T  3415594 ctttggaatttatgtgcacacttcatcatgttcatcttcatcatcttctt 3415643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 18670603 - 18670554
Alignment:
Q  336 ctttgaaatttatgtgcacttgtcatcatgttcaccttcatcatcttctt 385  Q
    |||||||||||||||||||   |||||||||||| ||| |||||||||||    
T  18670603 ctttgaaatttatgtgcacacttcatcatgttcatctttatcatcttctt 18670554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 81 - 382
Target Start/End: Original strand, 49053752 - 49054055
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgctaaaaa-taatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttg 179  Q
    ||||||||||| ||||| |||| |||| ||| ||||| | ||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||    
T  49053752 aaaatcacattgttgtgtgtcataattctgccaaaaaattatactaaatcattctttctcttctctagtgcacgagggaaattggcagaactttattttg 49053851  T
Q  180 taaactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatat-actcttttgcatc 278  Q
    ||||||| ||||| | |||| | ||||||||||||| || |||| ||||  ||||  ||  ||||||||||| |||||   | ||| || ||||||||||    
T  49053852 taaactaccattg-tcgatatgcttggtgtgaatgtgcaagtcacgtcaaggatttcattgtatcctgaaggggattcgccggtataacccttttgcatc 49053950  T
Q  279 cagttgacataactggt-gggacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatc 377  Q
    ||||||  ||||||||| ||| ||||||||||||||| |||||| | ||  |||||| | ||| |||||||||| ||   |||||||||||| |||| ||    
T  49053951 cagttggtataactggtgggggcgaatcgaacctaaaggttagtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcatcttcttc 49054050  T
Q  378 atctt 382  Q
    |||||    
T  49054051 atctt 49054055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 81 - 382
Target Start/End: Original strand, 49061332 - 49061635
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgct-aaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttg 179  Q
    ||||||||||| ||||| |||| |||| |||  |||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||    
T  49061332 aaaatcacattgttgtgtgtcataattctgccgaaaaattatactaaatcattctttcttttctctagtgcacgagggaaattgacaaaactttattctg 49061431  T
Q  180 taaactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatat-actcttttgcatc 278  Q
    ||||||| ||||| | |||| ||||||||||||||| ||  ||| ||||  ||||| ||  ||| ||||||| ||||| | | ||| || ||||||||||    
T  49061432 taaactaccattg-tcgatatgtttggtgtgaatgtgcaaatcacgtcaaggattccattgtattctgaaggggattcgtcggtataacccttttgcatc 49061530  T
Q  279 cagttgacataactggt-gggacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatc 377  Q
     ||||| |||||||||| ||| |||||||||||||||   |||| | ||  |||||| ||||  |||||||||||||   |||||||||||| |||| ||    
T  49061531 tagttggcataactggtgggggcgaatcgaacctaaagactagtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcatcttcttc 49061630  T
Q  378 atctt 382  Q
    |||||    
T  49061631 atctt 49061635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 85 - 348
Target Start/End: Complemental strand, 42263583 - 42263319
Alignment:
Q  85 tcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaac 184  Q
    ||||||| ||||||||||||||  |||  |||||||||||| ||||||||||||||||||||||||||||| ||||| || | |||||| |||||||||     
T  42263583 tcacattcttgtgagtcaaaatactgcctaaaataatactatatcattctttcttttctctagtgcacgagagaaatcgacaaaactttgttttgtaaat 42263484  T
Q  185 tatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatatactcttttgcatccagttg 284  Q
    || ||||| | |||||| || || ||||||| || |||| ||||  |||| || | ||||||||||| ||||||  | |||||  ||||||||   ||||    
T  42263483 taacattgttcgatacgcttagtatgaatgtgcaagtcatgtcaaagattttaaagtatcctgaaggggattcaccgttataccattttgcattttgttg 42263384  T
Q  285 acataactggtggg-acgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttat 348  Q
    |||||| ||||||| ||||  |||||||||| |||||| ||||| |||||  |||||||| ||||    
T  42263383 acataattggtgggaacgagccgaacctaaaggttagtgtgtctcacacatgctttgaaagttat 42263319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 50059450 - 50059585
Alignment:
Q  78 acaaaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattt 177  Q
    ||||||| |||||| |||||| |||||||| ||  |||||||||||| ||||||||||| |||||||||||||||||| |||||| | |||||||||||     
T  50059450 acaaaaaacacattcttgtgaatcaaaattctgtaaaaaataatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattc 50059549  T
Q  178 tgtaaactatcattgatggatacgtttggtgtgaat 213  Q
    | ||||||||||||||| |||||||| | |||||||    
T  50059550 tataaactatcattgatcgatacgttggatgtgaat 50059585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 17458387 - 17458501
Alignment:
Q  98 agtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatgga 197  Q
    |||||||||| | | ||||  ||||||||||||||||||| |||||||||||||||||   ||| || | ||||||||||||||||||||||||||| ||    
T  17458387 agtcaaaattcttccaaaatcaatactaaatcattctttcatttctctagtgcacgagatgaatagagataactttattttgtaaactatcattgatcga 17458486  T
Q  198 tacgtttggtgtgaa 212  Q
    |||| ||||| ||||    
T  17458487 tacgcttggtttgaa 17458501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 52282138 - 52282037
Alignment:
Q  114 aaaataatactaaatcattctttcttttctctagtgca--cgagggaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtga 211  Q
    ||||||||| ||||||||||||||||||||||||||||   ||| |||||||| | ||||||||| ||||||||| ||||||| ||| || |||||||||    
T  52282138 aaaataatattaaatcattctttcttttctctagtgcatgagagagaaattgacataactttattctgtaaactaccattgatcgatgcgcttggtgtga 52282039  T
Q  212 at 213  Q
    ||    
T  52282038 at 52282037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 251
Target Start/End: Original strand, 31285890 - 31286061
Alignment:
Q  80 aaaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttg 179  Q
    |||| ||||||| ||||||| ||||||||||  |||||||||||||||| |||  ||||||||||| ||| ||| | | |||||| |||| ||||||||     
T  31285890 aaaagtcacattcttgtgag-caaaattatgtaaaaaataatactaaattatttcttcttttctctggtgaacgcgagtaattgagagaattttatttta 31285988  T
Q  180 taaactatc-attgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaagg 251  Q
    |||| |||| |||||| |||| | ||| | ||||||| || |||| | || |||||| | | |||||||||||    
T  31285989 taaagtatcaattgatcgataagcttgatatgaatgttcaagtcacggcaatgattccaaagtatcctgaagg 31286061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 10917479 - 10917592
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgt 180  Q
    ||||||||||| |||| ||||||| || |||  |||||||||| ||||||||  ||||||||||||||||||| | | ||   | |||| || |||||||    
T  10917479 aaaatcacattcttgtaagtcaaagttctgccgaaaataatacaaaatcatttcttcttttctctagtgcacgggagtaaaccagagaatttgattttgt 10917578  T
Q  181 aaactatcattgat 194  Q
    ||| ||||||||||    
T  10917579 aaaatatcattgat 10917592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 12634476 - 12634557
Alignment:
Q  113 aaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgat 194  Q
    ||||||||||||||||  || |||||||||| |||||||  || |||||||| ||||||||||| |||||| || |||||||    
T  12634476 aaaaataatactaaatgcttttttcttttctttagtgcattagagaaattgacagaactttattctgtaaattaccattgat 12634557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 81 - 374
Target Start/End: Original strand, 12729350 - 12729644
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgt 180  Q
    ||||||||||| ||||| ||||||||| |||  ||||| ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||  ||    
T  12729350 aaaatcacattgttgtgtgtcaaaattctgccgaaaattatactaaataattctttcttttctctagtgcacgagagaaattgacagaactttattcagt 12729449  T
Q  181 aaactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatat-actcttttgcatcc 279  Q
    ||||||  |||| | |||| | ||||||||||||| || |||| ||||  ||||  ||  ||||||||||| || ||   | ||| || |||||||||||    
T  12729450 aaactacaattg-tcgatatgcttggtgtgaatgtgcaagtcatgtcaaggatttcatcgtatcctgaaggggaatcgccggtataacccttttgcatcc 12729548  T
Q  280 agttgacataactggtgg-gacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttc 374  Q
     |||| |||||||||||| | ||||||| ||||||| |||||| ||||  |||||| ||||| |||| ||||| |||| |||||||||||| ||||    
T  12729549 ggttggcataactggtggaggcgaatcgtacctaaaggttagtgtgtcccacacactctttggaattcatgtgtacttttcatcatgttcatcttc 12729644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 263 - 385
Target Start/End: Complemental strand, 28696094 - 28695971
Alignment:
Q  263 tatactcttttgcatccagttgacataactggtg-ggacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcat 361  Q
    ||||| ||||||||||  |||||||||||||||| || |||||| ||||||||||||||| ||||  |||||| ||||| |||||||| ||| |  ||||    
T  28696094 tatacccttttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcat 28695995  T
Q  362 catgttcaccttcatcatcttctt 385  Q
    ||||||||  ||||||||||||||    
T  28695994 catgttcatattcatcatcttctt 28695971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 28696236 - 28696108
Alignment:
Q  84 atcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaa 183  Q
    |||||||| ||||||||| |||||  ||| ||||||    | ||||||||||||||||||| || |||||||| ||||||| ||||||||||| | ||||    
T  28696236 atcacattcttgtgagtctaaattcagctgaaaata----tgaatcattctttcttttctccagggcacgaggaaaattgacagaactttattctataaa 28696141  T
Q  184 ctatcattgatggatacgtttggtgtgaatgta 216  Q
     ||||||||||  ||||| ||||||||||||||    
T  28696140 ttatcattgatcaatacgcttggtgtgaatgta 28696108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 14546403 - 14546261
Alignment:
Q  113 aaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaa 212  Q
    |||||||||||||||||||||||||||||||||| || |  || |||||||| | ||||||| | |||||| || ||||||| |||| ||||||||||||    
T  14546403 aaaaataatactaaatcattctttcttttctctaatgaatcagagaaattgacataactttagtatgtaaagtaccattgatcgata-gtttggtgtgaa 14546305  T
Q  213 tgtacatgtcaagtcagtgattctataatatcctgaaggagattc 257  Q
    ||| || |||| ||||  ||||| | |||||| | ||||||||||    
T  14546304 tgtgcaagtcatgtcacggattcaaaaatatcat-aaggagattc 14546261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 228
Target Start/End: Original strand, 44729042 - 44729183
Alignment:
Q  87 acattattgtgagtcaaaa--ttatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaac 184  Q
    |||||||||||||||||||  ||  ||  ||||||||| ||| |||||||||| |||| |||||||||||| || ||||  | ||||  ||| |||||||    
T  44729042 acattattgtgagtcaaaaaattcagccgaaaataatattaagtcattctttcatttccctagtgcacgagagagattg--acaactacattctgtaaac 44729139  T
Q  185 tatcattgatggatacgtttggtgtgaatgtacatgtcaagtca 228  Q
    |||||||||| |||||| ||||| ||||||| || |||| ||||    
T  44729140 tatcattgatcgatacgcttggtatgaatgtgcaagtcacgtca 44729183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 81 - 385
Target Start/End: Complemental strand, 12239780 - 12239475
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgt 180  Q
    ||||||||||| ||||| || | |||| |||  ||||||||| ||||| |||||||||| ||||||||  || ||  ||||||| | ||||||||| ||     
T  12239780 aaaatcacattgttgtgtgttagaattctgccgaaaataatattaaattattctttcttatctctagtatactagataaattgacaaaactttattctgg 12239681  T
Q  181 aaactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatatactcttttgcatcca 280  Q
    |||||| ||||| | |||||| ||||||||||||| || |||| ||||  ||||  ||  ||||||||||| |||||   || |||| |||||||||||     
T  12239680 aaactaccattg-tcgatacgcttggtgtgaatgtgcaagtcacgtcaaggatttcatcgtatcctgaaggggattcgccgacatacccttttgcatccg 12239582  T
Q  281 gtt-gacataactggtggga-cgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatca 378  Q
    ||| |||||||||||||||  ||||||||||||||| |||| | ||||  |||||| |||||||||||||||||||   ||||||| |||| | ||||||    
T  12239581 gtttgacataactggtgggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatcatattcatcatcatca 12239482  T
Q  379 tcttctt 385  Q
    |||||||    
T  12239481 tcttctt 12239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 34091633 - 34091467
Alignment:
Q  77 gacaaaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttatt 176  Q
    |||||||||||||||||| ||||||||||||  ||  ||||||||| |||||||||| |||||||||||| |||| ||| |||||||| ||||||||| |    
T  34091633 gacaaaaatcacattattatgagtcaaaattccgccgaaaataatattaaatcattcattcttttctctaatgcatgagagaaattgagagaactttact 34091534  T
Q  177 ttgtaaactatcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatat 243  Q
    |||||||||| |||| ||  ||||| ||||||||||||| || |||| ||||  |||||||||||||    
T  34091533 ttgtaaactaccattaattcatacgattggtgtgaatgtgcaagtcacgtcaaggattctataatat 34091467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 24870389 - 24870505
Alignment:
Q  93 ttgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattg 192  Q
    ||||||| ||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||    
T  24870389 ttgtgagacaaaattctgccaaaaataatactaaataagtctttcttttctctagtgcacgagaaaaattgatagaactttattatgtaaactatcattg 24870488  T
Q  193 atggatacgtttggtgt 209  Q
    ||  ||||| |||||||    
T  24870489 atcaatacgcttggtgt 24870505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 385
Target Start/End: Original strand, 37469058 - 37469141
Alignment:
Q  302 aatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatcatcttctt 385  Q
    |||| |||||||| |||||| ||||  |||||||||||||||||||||||||| | | |||||||||| |||||||||||||||    
T  37469058 aatcaaacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttctt 37469141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 1840614 - 1840741
Alignment:
Q  84 atcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaa 183  Q
    |||||||| || ||| |||||  | ||| |||| ||||||||||| || |||||||||||| | |||| ||| |||||||| ||| ||||||| ||||||    
T  1840614 atcacattcttttgaatcaaagatctgccaaaagtaatactaaataat-ctttcttttctcaaatgcatgagagaaattgacagatctttattatgtaaa 1840712  T
Q  184 ctatcattgatggatacgtttggtgtgaa 212  Q
    ||||||||||| ||||  |||||||||||    
T  1840713 ctatcattgatcgatatatttggtgtgaa 1840741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 321
Target Start/End: Original strand, 20463987 - 20464195
Alignment:
Q  114 aaaataatactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaat 213  Q
    ||||||||||||||||||| |||  || ||||| || ||||| |||||||| |||| ||||||||  |||| ||||||||| |||| | |||||||||||    
T  20463987 aaaataatactaaatcattatttacttactctaatgtacgagagaaattgacagaaatttattttacaaacaatcattgatcgatatgcttggtgtgaat 20464086  T
Q  214 gtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatatactcttttgcatccagttgacataactggt-gggacgaatcgaaccta 312  Q
    || || |||  || |  |||| || |||||  |||| ||||||    | |||||  |||| |||||  ||||||||||| || |||||||||||||||||    
T  20464087 gtgcaagtctcgttaaggattttaaaatattttgaaagagatttgccggtataccatttttcatccgattgacataactagtggggacgaatcgaaccta 20464186  T
Q  313 aaagttagt 321  Q
    ||| |||||    
T  20464187 aaaattagt 20464195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 24871395 - 24871475
Alignment:
Q  84 atcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgagggaaattga 164  Q
    |||||||||||||||||||||||| |||  ||||||||| ||||||||||| ||||||||  |||||||||| | ||||||    
T  24871395 atcacattattgtgagtcaaaattctgccgaaaataatattaaatcattctctcttttcttaagtgcacgagaggaattga 24871475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 186 - 385
Target Start/End: Complemental strand, 23757222 - 23757023
Alignment:
Q  186 atcattgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctataatatcctgaaggagattcattgatatactcttttgcatccagttga 285  Q
    ||||||||| ||||||||||||||||||||  |||||| ||||  | | | ||| |||| |||||| |||||     ||||| ||||||||||  |||      
T  23757222 atcattgattgatacgtttggtgtgaatgtgaatgtcacgtcaagggtcccatattatcttgaaggggattcgccagtatacccttttgcatctggttag 23757123  T
Q  286 cataactggtgggacgaatcgaacctaaaagttagtttgtctaacacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatcatcttctt 385  Q
    | ||| |||| ||  ||||||||||||||||||||| ||||  ||| | |||| | ||||||||| ||||  |||||||||||| ||||||||| |||||    
T  23757122 cttaattggtagggtgaatcgaacctaaaagttagtatgtcacacataaacttcggaatttatgttcactcttcatcatgttcatcttcatcattttctt 23757023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 30108344 - 30108282
Alignment:
Q  81 aaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttct 143  Q
    ||||||||||| ||||||||||| |||||||  |||||||||||||||||||  |||||||||    
T  30108344 aaaatcacattcttgtgagtcaacattatgccgaaaataatactaaatcatttcttcttttct 30108282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 24533342 - 24533441
Alignment:
Q  78 acaaaaatcacattattgtgagtcaaaattatgctaaaaataatactaa---atcattctttcttttctctagtgcacgagggaaattgaaagaacttta 174  Q
    |||||||||||||| || ||||||||| || |||  ||||| |||||||   || ||||||||||||||||||||||| || | |||||||||||| |||    
T  24533342 acaaaaatcacatt-ttatgagtcaaagttttgccgaaaattatactaataaattattctttcttttctctagtgcacaagagtaattgaaagaacatta 24533440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 30276278 - 30276205
Alignment:
Q  262 atatactcttttgcatccagttgacataactggt-gggacgaatcgaacctaaaagttagtttgtctaacacac 334  Q
    ||||| || ||||||||||||||| | ||||||| |||||||||| ||||||||  ||||| ||||| ||||||    
T  30276278 atataatcatttgcatccagttgataaaactggtagggacgaatcaaacctaaagtttagtgtgtctcacacac 30276205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 24870335 - 24870375
Alignment:
Q  20 ataaatttctctataaatagaaacactttggaggcagaaaa 60  Q
    |||| |||||||||||||||| |||||||||||||| ||||    
T  24870335 ataattttctctataaatagagacactttggaggcataaaa 24870375  T

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Target: scaffold0007 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 217650 - 217842
Alignment:
Q  20 ataaatttctctataaatagaaacactttggaggcagaaaataattcnnnnnnntaggacaaaaatcacattattgtgagtcaaaattatgctaaaaata 119  Q
    |||| ||||||||||||||||  |||||| |||||||||||||||||       ||  | |||||||||||| ||||| |||| |||| |||  ||||||    
T  217650 ataagtttctctataaataga--cactttagaggcagaaaataattcaaaagtataa-ataaaaatcacattgttgtgtgtcagaattctgccgaaaata 217746  T
Q  120 atactaaatcattctttcttttctctagtgcacgagggaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgt 215  Q
    || |||||| ||||||||||||||||||| |||||| |||||||  ||||| ||||||||||||||| ||||||| |||||  |||||||||||||    
T  217747 attctaaataattctttcttttctctagttcacgagagaaattggcagaacattattttgtaaactaccattgatcgatacacttggtgtgaatgt 217842  T

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Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 217947 - 217999
Alignment:
Q  330 cacacactttgaaatttatgtgcacttgtcatcatgttcaccttcatcatctt 382  Q
    ||||||||||| ||||||||||||||  |||| ||||||| ||||||||||||    
T  217947 cacacactttggaatttatgtgcactattcattatgttcatcttcatcatctt 217999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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