View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_13 (Length: 402)
Name: NF4667_low_13
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 268 - 383
Target Start/End: Original strand, 27224980 - 27225095
Alignment:
| Q |
268 |
aacatattgttgccaatacttgatctcattctaggaatcctttcaattgtaccgttatcaaatctcctcttcttggcacatctttcacttcacgttccct |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27224980 |
aacatattgttgccaatacttgatctcattctaggaatcctttcaattgtaccgttataaaatctcctcttcttggcacatctttcacttcacgttccct |
27225079 |
T |
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| Q |
368 |
gaaaactccttctgaa |
383 |
Q |
| |
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|||||||||||||||| |
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| T |
27225080 |
gaaaactccttctgaa |
27225095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 27224865 - 27224981
Alignment:
| Q |
17 |
atgaacttggcatagactaatctaattagttttagctaacacaaaagctcatgtgtgatctcttaaacatatacctattcctaccttgttcaagtgcgtg |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27224865 |
atgaacttcgcatagactaatctaattagttttagctaacacaaaagctcatgtgtcatctcttaaacatatacctattcctaccttgttcaagtgcgtg |
27224964 |
T |
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| Q |
117 |
aaaaaggaagcgtcaaa |
133 |
Q |
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|||||||||| |||||| |
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| T |
27224965 |
aaaaaggaagtgtcaaa |
27224981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 268 - 383
Target Start/End: Original strand, 259108 - 259223
Alignment:
| Q |
268 |
aacatattgttgccaatacttgatctcattctaggaatcctttcaattgtaccgttatcaaatctcctcttcttggcacatctttcacttcacgttccct |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
259108 |
aacatattgttgccaatacttgatctcattctaggaatcctttcaattgtaccgttataaaatctcctcttcttggcacatctttcacttcacgttccct |
259207 |
T |
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| Q |
368 |
gaaaactccttctgaa |
383 |
Q |
| |
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|||||||||||||||| |
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| T |
259208 |
gaaaactccttctgaa |
259223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 258993 - 259109
Alignment:
| Q |
17 |
atgaacttggcatagactaatctaattagttttagctaacacaaaagctcatgtgtgatctcttaaacatatacctattcctaccttgttcaagtgcgtg |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258993 |
atgaacttcgcatagactaatctaattagttttagctaacacaaaagctcatgtgtcatctcttaaacatatacctattcctaccttgttcaagtgcgtg |
259092 |
T |
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| Q |
117 |
aaaaaggaagcgtcaaa |
133 |
Q |
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|||||||||| |||||| |
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| T |
259093 |
aaaaaggaagtgtcaaa |
259109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 21740148 - 21740047
Alignment:
| Q |
31 |
gactaatctaattagttttagctaacacaaaagctcatgtgtgatctcttaaacatatacctattcctaccttgttcaagtgcgtgaaaaaggaagcgtc |
130 |
Q |
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|||||||| |||||| ||||||||| | ||||| || ||||| |||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |
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| T |
21740148 |
gactaatccaattagctttagctaagataaaagttcttgtgtcatctcttaaacatatacctattcctaccttgttcaaatgcctggaaaaggaagcgtc |
21740049 |
T |
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| Q |
131 |
aa |
132 |
Q |
| |
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|| |
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| T |
21740048 |
aa |
21740047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 10421302 - 10421402
Alignment:
| Q |
32 |
actaatctaattagttttagctaacacaaaagctcatgtgtgatctcttaaacatatacctattcctaccttgttcaagtgcgtgaaaaaggaagcgtca |
131 |
Q |
| |
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||||||| ||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| |
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| T |
10421302 |
actaatccaatcagttttagctaaaacaaaagctcctgtgccatctcttaaacatatacctattcctaccttgttcagatgccttgaaaaggaagcgtca |
10421401 |
T |
|
| Q |
132 |
a |
132 |
Q |
| |
|
| |
|
|
| T |
10421402 |
a |
10421402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 26381624 - 26381693
Alignment:
| Q |
44 |
agttttagctaacacaaaagctcatgtgtgatctcttaaacatatacctattcctaccttgttcaagtgc |
113 |
Q |
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|||||||||||| ||||| | ||||||| |||||||| |||||| ||||| || |||||||| |||||| |
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| T |
26381624 |
agttttagctaagacaaatgtacatgtgtcatctcttatacatattcctataccaaccttgtttaagtgc |
26381693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 5634830 - 5634761
Alignment:
| Q |
44 |
agttttagctaacacaaaagctcatgtgtgatctcttaaacatatacctattcctaccttgttcaagtgc |
113 |
Q |
| |
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|||||||||||| ||||| | ||||||| |||||||| |||||| ||||| || |||||||| |||||| |
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| T |
5634830 |
agttttagctaagacaaacgtacatgtgtcatctcttatacatattcctataccaaccttgtttaagtgc |
5634761 |
T |
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