View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667_low_15 (Length: 391)

Name: NF4667_low_15
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667_low_15
NF4667_low_15
[»] chr7 (4 HSPs)
chr7 (7-381)||(36692121-36692495)
chr7 (137-204)||(18846195-18846262)
chr7 (137-204)||(15660343-15660410)
chr7 (137-182)||(47790300-47790345)
[»] chr8 (5 HSPs)
chr8 (8-107)||(22703008-22703107)
chr8 (137-223)||(13955743-13955830)
chr8 (137-204)||(20293211-20293278)
chr8 (137-204)||(21079842-21079909)
chr8 (141-204)||(2108287-2108351)
[»] chr4 (4 HSPs)
chr4 (137-217)||(9498998-9499078)
chr4 (9-119)||(8521418-8521527)
chr4 (13-110)||(38201332-38201429)
chr4 (126-188)||(56201159-56201220)
[»] chr2 (5 HSPs)
chr2 (137-204)||(23219002-23219069)
chr2 (154-204)||(44672770-44672821)
chr2 (80-112)||(39487000-39487032)
chr2 (182-243)||(8790810-8790871)
chr2 (13-76)||(26042171-26042235)
[»] chr6 (2 HSPs)
chr6 (137-190)||(29355352-29355405)
chr6 (33-116)||(12891012-12891095)
[»] scaffold0692 (1 HSPs)
scaffold0692 (33-188)||(5006-5162)
[»] chr1 (3 HSPs)
chr1 (137-223)||(34624201-34624287)
chr1 (137-190)||(20039565-20039618)
chr1 (137-190)||(29403656-29403709)
[»] chr5 (1 HSPs)
chr5 (14-116)||(33238161-33238264)


Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 7 - 381
Target Start/End: Original strand, 36692121 - 36692495
Alignment:
Q  7 gactctttctagaaaattgtagaagcataggaaatgagagttagttagcaatttccttaattttagggaatactatgttataaaagggagggaagggtag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36692121 gactctttctagaaaattgtagaagcataggaaatgagagttagttagccctttccttaattttagggaatattatgttataaaagggagggaagggtag 36692220  T
Q  107 tgagtaagtcattaaaaagttgttgtgagtttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggttac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36692221 tgagtaagtcattaaaaagttgttgtgagtttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggttac 36692320  T
Q  207 ccctttcattttctgttattttccattgtaagagcttgctcacacatacatttcaatgaatttcaatttcactgtttttggatttctgaagttctatcac 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  36692321 ccctttcattttctgttattttccattgtaagagcttgctcacacatacatttcaatgaatttccatttcactgtttttgaatttctgaagttctatcac 36692420  T
Q  307 tttgtaagaaagatgtattagagttaaccctcaccaacctaattcccttcacttaaccttctaatatttattcat 381  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36692421 tttgtaagaaagaggtattagagttaaccctcaccaacctaactcccttcacttaaccttctaatatttattcat 36692495  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 18846262 - 18846195
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggtt 204  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  18846262 ttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctcagaactctggtt 18846195  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 15660343 - 15660410
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggtt 204  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||   |||||||||||    
T  15660343 ttgtttaggagagaagttctttctggtctaggagcttagctctggtaggagttctctgaactctggtt 15660410  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 47790345 - 47790300
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggt 182  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||    
T  47790345 ttgtttaggagagaagttctctctggtctaggagcttaactctggt 47790300  T

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Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 22703008 - 22703107
Alignment:
Q  8 actctttctagaaaattgtagaagcataggaaatgagagttagttagcaatttccttaattttagggaatactatgttataaaagggagggaagggtagt 107  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  22703008 actctttctagaagattgtagaagcatagggaatgagagttagttagcactttccttgattttagggaatattatgttataaaagggagtgaagggtagt 22703107  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 13955830 - 13955743
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggttacccctttc-attttctgtt 223  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||  |||||| ||||||||||    
T  13955830 ttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggttaatcctttcaattttctgtt 13955743  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 20293278 - 20293211
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggtt 204  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||||||||||   |||||||||||    
T  20293278 ttgtttaggagagaagttctctcttgtataggagcttagctctggtaggagttctctgaactctggtt 20293211  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 21079909 - 21079842
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggtt 204  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||||||||||   |||||||||||    
T  21079909 ttgtttaggagagaagttctctcttgtataggagcttagctctggtaggagttctctgaactctggtt 21079842  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 2108351 - 2108287
Alignment:
Q  141 ttaggagagaagttctctctgttctaggagcttagctctgg-taggagttcatagaactctggtt 204  Q
    ||||||||||| || |||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  2108351 ttaggagagaaattttctctggtctaggagcctagctctggttaggagttcatagaactctggtt 2108287  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 9498998 - 9499078
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggttacccctttcattt 217  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||   ||||||||||    
T  9498998 ttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcattt 9499078  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 8521527 - 8521418
Alignment:
Q  9 ctctttctagaaaattgtagaagcataggaaatgagagttagttagcaatttccttaattttagggaatactatgttataaaagggagggaagggtagtg 108  Q
    ||||||||| || ||| |||||||||| | |||| |||| |||||||  ||||||| ||||||||||||||| ||||||| |||||| ||||||||| ||    
T  8521527 ctctttctaaaagattatagaagcatatggaatg-gagtgagttagctctttccttgattttagggaatactctgttatagaagggatggaagggtattg 8521429  T
Q  109 agtaagtcatt 119  Q
    || ||||||||    
T  8521428 agcaagtcatt 8521418  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 38201332 - 38201429
Alignment:
Q  13 ttctagaaaattgtagaagcataggaaatgagagttagttagcaatttccttaattttagggaatactatgttataaaagggagggaagggtagtgag 110  Q
    |||||||| |||| ||||||||||||||| |||||||||| ||| |||  || ||||||||||||| | | ||||||||||||||| || ||||||||    
T  38201332 ttctagaagattgcagaagcataggaaataagagttagttggcacttttgttgattttagggaatattctattataaaagggaggggagtgtagtgag 38201429  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 56201159 - 56201220
Alignment:
Q  126 ttgttgtgagtttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagt 188  Q
    |||||| ||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||||    
T  56201159 ttgttgagagtttgtt-aggagagatgttctctctggtctaggagcctagctctggtaggagt 56201220  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 23219069 - 23219002
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggtt 204  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||    
T  23219069 ttgtttaggagagaagttctctctgatctaggagcttagctctggtaggagttctctgaactctggtt 23219002  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 44672821 - 44672770
Alignment:
Q  154 tctctctgttctaggagcttagctctggt-aggagttcatagaactctggtt 204  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  44672821 tctctctggtctaggagcatagctctggttaggagttcatagaactctggtt 44672770  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 39487032 - 39487000
Alignment:
Q  80 tatgttataaaagggagggaagggtagtgagta 112  Q
    |||||||||||||||||||||||||||||||||    
T  39487032 tatgttataaaagggagggaagggtagtgagta 39487000  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 8790810 - 8790871
Alignment:
Q  182 taggagttcatagaactctgg-ttacccctttcattttctgttattttccattgtaagagctt 243  Q
    ||||||||||||||||||||| ||| |||||| |||||||||| ||  |||||||||||||||    
T  8790810 taggagttcatagaactctggtttatccctttgattttctgtt-ttcaccattgtaagagctt 8790871  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 26042171 - 26042235
Alignment:
Q  13 ttctagaaaattgtagaagcataggaaatgagagttagtt-agcaatttccttaattttagggaa 76  Q
    |||||||| |||||||||||||| | ||| |||||||||| ||  |||||||| |||||||||||    
T  26042171 ttctagaagattgtagaagcatatgcaataagagttagttgagatatttccttgattttagggaa 26042235  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 29355405 - 29355352
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttc 190  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  29355405 ttgtttaggagagaagttctatctggtctaggagcttagctctggtaggagttc 29355352  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 12891095 - 12891012
Alignment:
Q  33 ataggaaatgagagttagttagcaatttccttaattttagggaatactatgttataaaagggagggaagggtagtgagtaagtc 116  Q
    ||||| ||| |||||  ||||||| |||| || ||||||||||||| |  ||||||||||||||||||  ||||||||||||||    
T  12891095 atagggaataagagtaggttagcactttcattgattttagggaatattccgttataaaagggagggaaatgtagtgagtaagtc 12891012  T

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Target: scaffold0692 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 5162 - 5006
Alignment:
Q  33 ataggaaatgagagttagttagcaatttccttaattttagggaatactatgttataaaagggagggaagggtagtgagtaagtcatt--aaaaagttgtt 130  Q
    ||||| ||| |||||  ||||||| |||| || ||||||||||||| |   |||||||||||||||||  |||||||||||||| ||   | || |||||    
T  5162 atagggaataagagtaggttagcactttcattgattttagggaatattccattataaaagggagggaaatgtagtgagtaagtccttcagataaattgtt 5063  T
Q  131 gtgagtttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagt 188  Q
    | ||||| | |||| ||||| |||||||||  ||||||||| ||||||||||||||||    
T  5062 gagagttcg-ttagcagagatgttctctctagtctaggagcctagctctggtaggagt 5006  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 34624287 - 34624201
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggttacccctttcattttctgtt 223  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||   ||||| ||||||  | |||| |||||||||    
T  34624287 ttgtttaggagaaaagttgtctctggtctaggagcttagctctggtaggagttctctgaactatggttaatcatttccttttctgtt 34624201  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 20039565 - 20039618
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttc 190  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  20039565 ttgtctaggagagaagttctttctggtctaggagcttagctctggtaggagttc 20039618  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 29403709 - 29403656
Alignment:
Q  137 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttc 190  Q
    ||||||||||||||||||||||||| ||| ||||||| |||| ||||| |||||    
T  29403709 ttgtttaggagagaagttctctctggtcttggagcttggctcgggtagaagttc 29403656  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 33238264 - 33238161
Alignment:
Q  14 tctagaaaattgtagaagcataggaaatgagagttagttagcaatttccttaattttagggaata-ctatgttataaaagggagggaagggtagtgagta 112  Q
    ||||||| ||| |||||||||||| ||||| ||||| || ||| ||||||| ||||| |||||||   || |||||||||||||||||  ||||||||||    
T  33238264 tctagaagattatagaagcatagggaatgaaagttatttggcactttccttgattttcgggaatataaatattataaaagggagggaaatgtagtgagta 33238165  T
Q  113 agtc 116  Q
    ||||    
T  33238164 agtc 33238161  T

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