View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_17 (Length: 372)
Name: NF4667_low_17
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 80 - 369
Target Start/End: Original strand, 32034300 - 32034589
Alignment:
| Q |
80 |
tacgaatgctgacaaaattgctaaatgtatagatctcttttcttaaaaatgttttgaataattttttatttgcacagatcttttgaaccatattatatat |
179 |
Q |
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| T |
32034300 |
tacgaatgctgacaaaattgctaaatgtatagatctcttttcttaaaaatgttttgaataattttttatttgcacagatcttttgaaccatattatatat |
32034399 |
T |
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| Q |
180 |
acttaacttctttgttaatgatcgattcaatctttttcactaataataaagaactagtgtacacaacattagtaagattcgaatagtttgtcacgagatc |
279 |
Q |
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| T |
32034400 |
acttaacttctttgttaatgatcgattcaatctttttcactaataataaagaactagtgtacacaacattagtaagattcgaatagtttgtcacgagatc |
32034499 |
T |
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| Q |
280 |
tgctaataattaataaatgtactcaaatatgtattattaagaaaaatatattcttaatatctgttcaagagatctcacggtgttgtgata |
369 |
Q |
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| T |
32034500 |
tgctaataattaataaatgtactcaaatatgtattattaagaaaaatatattcttaatatctgttcaagagatctcacggtgttttgata |
32034589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 32034169 - 32034233
Alignment:
| Q |
16 |
aatataaaaatgaaaagttaaaact-ttaagagtgaacattgttgcccaaatggttctcggctca |
79 |
Q |
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| T |
32034169 |
aatataaaaatgaaaagttaaaactcttaagagtgaacattgttgcccaaatggttctcggctca |
32034233 |
T |
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