View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_18 (Length: 367)
Name: NF4667_low_18
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_18 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 304
Target Start/End: Original strand, 39559218 - 39559515
Alignment:
| Q |
7 |
gaagcaaaggatgtaatccttacggcactttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39559218 |
gaagcaaaggatgtaatccttacggcactttgtaaggttattcgtacagctagagaggttctaaacctatccaatttggtcagagctaacatttccaaag |
39559317 |
T |
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| Q |
107 |
gttccatcgagtttgattggctttataacgtgagccatctccgcatacgagagacctccccctgttatttacatggcatgtttcacaatttaacccatct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559318 |
gttccatcgagtttgattggctttataacgtgagccatctccgcatacgagagacctccccctgttatttacatggcatgtttcacaatttaacccatct |
39559417 |
T |
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| Q |
207 |
ggagcttatattagacttctgcgaactcgcctcgttcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatcattc |
304 |
Q |
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| T |
39559418 |
ggagcttatattagacttctgcgaactcgcctcgttcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatcattc |
39559515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 50814827 - 50814979
Alignment:
| Q |
7 |
gaagcaaaggatgtaatccttacggcactttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaag |
106 |
Q |
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||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
50814827 |
gaagcaaaggatgtaatagttacgagacgttgtatggtgattcgtacaggtagagaggttctaaacctatccaatttggtcagagctaacatttccaatg |
50814926 |
T |
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| Q |
107 |
gttccatcgagtttgattggctttataacgtgagccatctccgcatacgagag |
159 |
Q |
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| T |
50814927 |
gtttacttgagtttgattggctttataacgtgaatcttctccgcatacaagag |
50814979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 50861037 - 50860885
Alignment:
| Q |
7 |
gaagcaaaggatgtaatccttacggcactttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaag |
106 |
Q |
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||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
50861037 |
gaagcaaaggatgtaatagttacgagacgttgtatggtgattcgtacaggtagagaggttctaaacctatccaatttggtcagagctaacatttccaatg |
50860938 |
T |
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| Q |
107 |
gttccatcgagtttgattggctttataacgtgagccatctccgcatacgagag |
159 |
Q |
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||| | ||||||||||||||||||||||||| | ||||||||||| |||| |
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| T |
50860937 |
gtttacttgagtttgattggctttataacgtgaatcttctccgcatacaagag |
50860885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 49868308 - 49868246
Alignment:
| Q |
242 |
tcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatcattc |
304 |
Q |
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| T |
49868308 |
tcaagtggaactggctgattgaactgcttgaaaatttccctaaacttcaaactcttatcattc |
49868246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 49856999 - 49856951
Alignment:
| Q |
176 |
tacatggcatgtttcacaatttaacccatctggagcttatattagactt |
224 |
Q |
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| T |
49856999 |
tacatagcgtgtttcacaatttaacccacctggagcttagattggactt |
49856951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 2408 - 2380
Alignment:
| Q |
275 |
atttccccaaacttcaaactcttatcatt |
303 |
Q |
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| T |
2408 |
atttccccaaacttcaaactcttatcatt |
2380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 3954 - 3926
Alignment:
| Q |
275 |
atttccccaaacttcaaactcttatcatt |
303 |
Q |
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| T |
3954 |
atttccccaaacttcaaactcttatcatt |
3926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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