View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667_low_24 (Length: 333)

Name: NF4667_low_24
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667_low_24
NF4667_low_24
[»] chr1 (1 HSPs)
chr1 (12-333)||(28713998-28714317)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 28714317 - 28713998
Alignment:
Q  12 acagaactacagtctatggattaaaggagcaatctgaatcttagggcaactggaaagatggaaaacaaaatatggaaaaccaacactgaacttcaattgc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28714317 acagaactacagtctatggattaaaggagcaatctgaatcttagggtaactggaaagatggaaaacaaaatacggaaaaccaacactgaacttcaattgc 28714218  T
Q  112 agagataattatgctcgtctattcagttgcacaaagaattggaacaggatagatcctctcaacaaattgcaagttacaaatcacaacttacttcagaaac 211  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28714217 agagataattatgcttgtctattcagttgcacaaagaattggaacaggataggtcctctcaacaaattgcaagttacaaatcacaacttacttcagaaac 28714118  T
Q  212 aaagtaacttcaaagtccaattactggattcacagttcaaagcaaacaaaagttgatccaaaaggcatgcaaaggggtcaaatcagacatcacaagcaaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  |    
T  28714117 aaagtaacttcaaagtccaattactggattcacagttcaaagcaaacaaaagttgatccaaaaggcgtgcaaaggggtcaaatcagacatcgcaagc--a 28714020  T
Q  312 atattagatgctgacacggaca 333  Q
    ||||||||||||||||| ||||    
T  28714019 atattagatgctgacactgaca 28713998  T

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