View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_26 (Length: 313)
Name: NF4667_low_26
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_26 |
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| [»] scaffold0294 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 89 - 303
Target Start/End: Original strand, 5385124 - 5385340
Alignment:
| Q |
89 |
atgatgttgaaaagttctaaaataggagtctgctctattaaatagtttagtattctgattagtattttctccttttgaccacaagcttctgcaacg--ta |
186 |
Q |
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| T |
5385124 |
atgatgttgaaaagttctaaaataggagtctacactattaaatagtttagtattctgattattattttctccttttgaccacaagcttctgcaacgtata |
5385223 |
T |
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| Q |
187 |
gaggatatcagtactgctttgagtaaataaatgttaggagagaggaacctctgaatttgaaagaaacaatnnnnnnnnttctcatgtaagtaattctttt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5385224 |
gaggatatcagtactgctttgagtaaataaatgttaggagtgaggaacctctgaatttgaaagaaacaataaaaaaaattctcatgtaagtaattctttt |
5385323 |
T |
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| Q |
287 |
atatatttttacctatg |
303 |
Q |
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||||||||||||||||| |
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| T |
5385324 |
atatatttttacctatg |
5385340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 5385006 - 5385077
Alignment:
| Q |
18 |
aaaattgatatggtctcatcaaggcttcttctcaaagatttgttttgtatatttaatttcctaatataaaaa |
89 |
Q |
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| T |
5385006 |
aaaattgatatggtctcatcaaggcttctcctcaaagatttgttttgtatatttaatttcctaatataaaaa |
5385077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 89 - 303
Target Start/End: Complemental strand, 7302 - 7082
Alignment:
| Q |
89 |
atgatgttgaaaagttctaaaataggagtctgctctattaaata---gtttagtattctgattagtattttctccttttgaccacaagcttctgcaacgt |
185 |
Q |
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| T |
7302 |
atgatgttggaaagttctaaaataggagtctgctctattaaatactagtttagtattctgattagtattttctccttt-gaccacaagcttctgcaatgt |
7204 |
T |
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| Q |
186 |
agaggatatcagtactgctttgagtaaataaatgttaggagagaggaacctctgaatttgaaagaaacaatnnnnnnnnttctcatg----taagtaatt |
281 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||| |
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| T |
7203 |
agaggatagcagtactgctttgagtaaataaatgttaggagagaggaacctttgaatttgaaagaaacaataaaaaaaattctcatgttaattagtaatt |
7104 |
T |
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| Q |
282 |
cttttatatatttttacctatg |
303 |
Q |
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| T |
7103 |
cttttatatatttttacctatg |
7082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 7393 - 7336
Alignment:
| Q |
32 |
ctcatcaaggcttcttctcaaagatttgttttgtatatttaatttcctaatataaaaat |
90 |
Q |
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|||||||| |||| | |||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
7393 |
ctcatcaaagcttatactcaaagatttgttttctata-ttaatttcctaatataaaaat |
7336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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