View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667_low_3 (Length: 936)

Name: NF4667_low_3
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667_low_3
NF4667_low_3
[»] chr3 (1 HSPs)
chr3 (5-913)||(54074635-54075543)
[»] chr2 (1 HSPs)
chr2 (440-529)||(3229393-3229482)
[»] chr4 (1 HSPs)
chr4 (576-645)||(48529190-48529259)
[»] chr1 (1 HSPs)
chr1 (576-623)||(34849736-34849783)


Alignment Details
Target: chr3 (Bit Score: 869; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 869; E-Value: 0
Query Start/End: Original strand, 5 - 913
Target Start/End: Original strand, 54074635 - 54075543
Alignment:
Q  5 gccgtttctggttggagccctgattacgacctagacgatcgtccatggaagctaaacgcaaaaaatcacgttgtcgttcataccaatgcaaacaaaaaca 104  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54074635 gccgtttctggttggagacctgattacgaccttgacgatcgtccatggaagctaaacgcaaaaaatcacgttgtcgttcataccaatgcaaacaaaaaca 54074734  T
Q  105 acaacatcgtcaacgagttttcacaccaatcacgtcgtgtttcatccatcaacttcagaaactcgttctcaacggtttcagttttattaccagattggga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54074735 acaacatcgtcaacgagttttcacaccaatcacgtcgtgtttcatccatcaacttcagaaactcgttctcaacggtttcagttttattaccagattggga 54074834  T
Q  205 gattctcgttctcgtttctccaaacacgcctttatcttcttccgatgaatataactgccttttccggaacaaccaaatgtctcaggcgaaattctctggt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54074835 gattctcgttctcgtttctccaaacacgcctttatcttcttccgatgaatataactgccttttccggaacaaccaaatgtctcaggcgaaattctctggt 54074934  T
Q  305 gttttacctttcaccaaccgtacaacgttcaagtgcgacatgccgagtacggtttggcgccggaaaatattttcgcaacctatgttggtaaccggaacgt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54074935 gttttacctttcaccaaccgtacaacgttcaagtgcgacatgccgggtacggtttggcgccggaaaatattttcgcaacctatgttggtaaccggaacgt 54075034  T
Q  405 cggaaaatgaatttcaaaatcattctccggcgacggagcttgtgaggtggaattttgttgtttacgagtctttttcaatggaagacgacgtcgttttgtt 504  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54075035 cggaaaatgaatttcaaaatcattctccggcggcggagcttgtgaggtggaattttgttgtttacgagtctttttcaatggaagacgacgtagttttgtt 54075134  T
Q  505 tgccaaaggtgtgaatcatcgtcaaggctacgacaggccggcgaaggagcttaactgtgttttccaaataggagacggaattcgcaccgccgttacaagc 604  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54075135 tgccaaaggtgttaatcatcgtcaaggctacgacaggccggcgaaggagcttaactgtgttttccaaataggagacggaattcgcaccgccgttacaagc 54075234  T
Q  605 tctgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattccaaaattggtgtttccctcgagattattggagaaaacatcg 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  54075235 tctgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattccgaaattggagtttccctcgagattattggagaaaacatcg 54075334  T
Q  705 tggttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtggctgttcaaaagtttgggcctccggcccagcccaaatattt 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  54075335 tggttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtggcagttcaaaactttgggcctccggcccagcccaaatattt 54075434  T
Q  805 cctttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatattgtatgat 904  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54075435 cctttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatattgtatgat 54075534  T
Q  905 aatggaagc 913  Q
    |||||||||    
T  54075535 aatggaagc 54075543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 440 - 529
Target Start/End: Complemental strand, 3229482 - 3229393
Alignment:
Q  440 gagcttgtgaggtggaattttgttgtttacgagtctttttcaatggaagacgacgtcgttttgtttgccaaaggtgtgaatcatcgtcaa 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3229482 gagcttgtgaggtggaattttgttgtttacgagtctttttcaatggaggacgacgtcgttttgtttgccaaaggtgtgaatcatcgtcaa 3229393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 576 - 645
Target Start/End: Complemental strand, 48529259 - 48529190
Alignment:
Q  576 gagacggaattcgcaccgccgttacaagctctgttcaagaggttttccgatgcttgcatccagatccgtc 645  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||| |||| | ||||||||||||||    
T  48529259 gagacggaatttgcaccgccgttacaagctccattcaagaggttttcccatgcctccatccagatccgtc 48529190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 576 - 623
Target Start/End: Original strand, 34849736 - 34849783
Alignment:
Q  576 gagacggaattcgcaccgccgttacaagctctgttcaagaggttttcc 623  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  34849736 gagacgtaattcgcaccgccgttacaagctccgttcaagaggttttcc 34849783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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