View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_30 (Length: 298)
Name: NF4667_low_30
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_30 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 20255 - 20499
Alignment:
| Q |
18 |
tttccaagtgcaagtacctctgtaacacaaacatttgtaacaacatgatcataatcaagtaatcaaaaggaaaccaaaaaataactttccagattaagca |
117 |
Q |
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| T |
20255 |
tttccaagtgcaagtacctctgtaacacaaacatttgtaacaacatgatcataatcaagtaatcaaaaggaaaccaaaaaataactttccagattaagca |
20354 |
T |
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| Q |
118 |
aagttccataccttgattaatacaaagatttttcctggaacctaaactcacaacacccatttcatcagcaaacactgtctttctcaactcctttacaaac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |
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| T |
20355 |
aagttccataccttgattaatacaaagatttttcctggaacctaaactcacaacacccatttcatcagcaaacaccgttttcctcaactcctttacaaac |
20454 |
T |
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| Q |
218 |
tgtgaaagctgcgaatgtgtcctactacaaaaataaaccttcaat |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20455 |
tgtgaaagctgcgaatgtgtcctactacaaaaataaaccttcaat |
20499 |
T |
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