View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_32 (Length: 268)
Name: NF4667_low_32
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 49180708 - 49180471
Alignment:
| Q |
11 |
cacagaggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttccaaaaaacac |
110 |
Q |
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| T |
49180708 |
cacaaaggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttcagaaaaacac |
49180609 |
T |
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| Q |
111 |
agattgatccatgcttgcacaggcgtatctcacaaaactcaccannnnnnnngcaaggattgggcatatcattttatctataataacatgtgaggaacca |
210 |
Q |
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| T |
49180608 |
agattgatccatgcttgcacaggcgtatctcacaaaactcacca-ttttttcgcaaggattgggcatatcattttatctgtaataacatgtgaggaacca |
49180510 |
T |
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| Q |
211 |
tgaatagtatgcatagtgaacgaaaggaagatcaaacaa |
249 |
Q |
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| T |
49180509 |
tgaatagtatgcatagtgaacgaaaggaagatcaaacaa |
49180471 |
T |
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