View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667_low_35 (Length: 256)

Name: NF4667_low_35
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667_low_35
NF4667_low_35
[»] chr5 (1 HSPs)
chr5 (1-245)||(24426572-24426816)
[»] chr7 (3 HSPs)
chr7 (150-245)||(5439408-5439502)
chr7 (150-245)||(5448418-5448512)
chr7 (136-189)||(15589333-15589386)
[»] chr6 (1 HSPs)
chr6 (150-244)||(23605353-23605446)
[»] chr8 (2 HSPs)
chr8 (181-230)||(39687732-39687780)
chr8 (204-232)||(7449742-7449770)
[»] chr3 (2 HSPs)
chr3 (136-245)||(17731614-17731722)
chr3 (136-245)||(19032845-19032953)
[»] chr1 (1 HSPs)
chr1 (150-243)||(52021574-52021666)
[»] scaffold0027 (1 HSPs)
scaffold0027 (11-122)||(12129-12238)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 24426572 - 24426816
Alignment:
Q  1 atatagaccctcaagtttctcccaatgctttttggataacgacgtgccaattgaacattcgcaataatatatttagccaaagacatacaaattgcactcg 100  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24426572 atatagaccctcaagtttctcccaatactttttggatgacgacgtgccaattgaacattcgcaataatatatttagccaaagacatacaaattgcactcg 24426671  T
Q  101 aagttctcctatctagttcctcacattgaaaattcttcctttcaacgctttgtataatcctaattgtatcggcacatctttgacttgtattttctataag 200  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||    
T  24426672 aagttctcctatctagttcctcacattgaaaatgtttcctttcaacgctttgtataatcctaattgtaccgacacatttttaacttgtattttctataag 24426771  T
Q  201 ttaaaaattgattcttccattaaatttctctaaatcaaacttcat 245  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||    
T  24426772 ttaaaaattgattcttctattaaatttctcttaatcaaacttcat 24426816  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 5439408 - 5439502
Alignment:
Q  150 ttgtataatcctaattgtatcggcacatctttgacttgtattttctataagttaaaaattgattcttccattaaatttctctaaatcaaacttcat 245  Q
    |||| ||||||| |||||||| ||||||| |||||||||| |||| | |||  |||| ||||||||||||| ||| ||| |||  |||||||||||    
T  5439408 ttgtgtaatcctgattgtatccgcacatccttgacttgtactttccacaagg-aaaagttgattcttccatcaaacttcgctatgtcaaacttcat 5439502  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 5448418 - 5448512
Alignment:
Q  150 ttgtataatcctaattgtatcggcacatctttgacttgtattttctataagttaaaaattgattcttccattaaatttctctaaatcaaacttcat 245  Q
    |||| ||||||| |||||||| ||||||| |||||||||| |||| | |||  |||| ||||||||||||| ||| ||| |||  |||||||||||    
T  5448418 ttgtgtaatcctgattgtatccgcacatccttgacttgtactttccacaagg-aaaagttgattcttccatcaaacttcgctatgtcaaacttcat 5448512  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 15589333 - 15589386
Alignment:
Q  136 ttcctttcaacgctttgtataatcctaattgtatcggcacatctttgacttgta 189  Q
    |||| |||| ||| |||| ||||||| |||||||| ||||||||||||||||||    
T  15589333 ttccattcaccgccttgtgtaatcctgattgtatcagcacatctttgacttgta 15589386  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 23605353 - 23605446
Alignment:
Q  150 ttgtataatcctaattgtatcggcacatctttgacttgtattttctataagttaaaaattgattcttccattaaatttctctaaatcaaacttca 244  Q
    |||| |||| |||||||||||  |||||| |||||||| ||||||||  ||  ||||||||| | |||||| |||||||||||  ||||||||||    
T  23605353 ttgtgtaattctaattgtatcatcacatcattgacttgcattttctacgagccaaaaattgact-ttccatcaaatttctctatgtcaaacttca 23605446  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 39687732 - 39687780
Alignment:
Q  181 tgacttgtattttctataagttaaaaattgattcttccattaaatttctc 230  Q
    ||||||| ||||||||||||||| || |||||||||| ||||||||||||    
T  39687732 tgacttgaattttctataagttagaa-ttgattcttctattaaatttctc 39687780  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 7449742 - 7449770
Alignment:
Q  204 aaaattgattcttccattaaatttctcta 232  Q
    |||||||||||||||||||||||||||||    
T  7449742 aaaattgattcttccattaaatttctcta 7449770  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 17731614 - 17731722
Alignment:
Q  136 ttcctttcaacgctttgtataatcctaattgtatcggcacatctttgacttgtattttctataagttaaaaattgattcttccattaaatttctctaaat 235  Q
    ||||||||||||| |||| ||| ||| |||||||| ||||||| ||||| |||| |||| | |||   ||| |||||||||  |||||| |||||||  |    
T  17731614 ttcctttcaacgccttgtgtaaacctgattgtatcagcacatccttgacatgtactttccacaag-ccaaagttgattcttatattaaacttctctatgt 17731712  T
Q  236 caaacttcat 245  Q
    ||||||||||    
T  17731713 caaacttcat 17731722  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 19032845 - 19032953
Alignment:
Q  136 ttcctttcaacgctttgtataatcctaattgtatcggcacatctttgacttgtattttctataagttaaaaattgattcttccattaaatttctctaaat 235  Q
    ||||||||||||| |||| ||| ||| |||||||| ||||||| ||||| |||| |||| | |||   ||| |||||||||  |||||| |||||||  |    
T  19032845 ttcctttcaacgccttgtgtaaacctgattgtatcagcacatccttgacatgtactttccacaag-ccaaagttgattcttatattaaacttctctatgt 19032943  T
Q  236 caaacttcat 245  Q
    ||||||||||    
T  19032944 caaacttcat 19032953  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 52021666 - 52021574
Alignment:
Q  150 ttgtataatcctaattgtatcggcacatctttgacttgtattttctataagttaaaaattgattcttccattaaatttctctaaatcaaacttc 243  Q
    |||| |||||||||||||||| ||||||| || | ||||| |||| | ||| | ||| ||||||||||||| ||| |||||||  |||||||||    
T  52021666 ttgtgtaatcctaattgtatcagcacatcctttatttgtactttccacaag-tcaaagttgattcttccatcaaacttctctatgtcaaacttc 52021574  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 12238 - 12129
Alignment:
Q  11 tcaagtttctcccaatgctttttggataacgacgtgccaattgaacattcgcaataatatatttagccaaagacatacaaattgcactcgaagttctcct 110  Q
    ||||||||||||||| ||   |||| | | ||||||||||  |||||||| ||| |||||  |||||||||||||| || |||| |||| ||| ||||      
T  12238 tcaagtttctcccaaagcaccttggttgatgacgtgccaa--gaacattcacaagaatattcttagccaaagacatgcagattgtactcaaagctctcaa 12141  T
Q  111 atctagttcctc 122  Q
    ||||||||||||    
T  12140 atctagttcctc 12129  T

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