View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_39 (Length: 247)
Name: NF4667_low_39
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 49905402 - 49905630
Alignment:
| Q |
1 |
ctagtcttttctttcatagctatgaatgaatgaatgaaatactccccctctcgcttccacaggagaaatcaaataaattca------aggacaaagactc |
94 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49905402 |
ctagccttttctttcatagctatgaatgaatgaa----atactccccctctcgcttccacaggagaaatcaaataaattcaagttcaaggacaaagactc |
49905497 |
T |
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| Q |
95 |
agtactgacataaaaggacaccctgatgagaaggttagcacatatttggattattcaaaatccggtaataatattaagtcctcataatttggcttccatt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
49905498 |
agtactgacataaaaggacaccctgatgagaaggttagcacatatttggattattcaaaatccggtaa------taactcctcataatttggcttccatt |
49905591 |
T |
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| Q |
195 |
ttccaactctaagtttgtacacacgcctaatttgttagt |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
49905592 |
ttccaactctaagtttgtacacacgcctaatttgttagt |
49905630 |
T |
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