View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667_low_4 (Length: 704)

Name: NF4667_low_4
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667_low_4
NF4667_low_4
[»] chr4 (15 HSPs)
chr4 (92-690)||(54147477-54148077)
chr4 (183-310)||(16870567-16870700)
chr4 (479-556)||(16870777-16870858)
chr4 (529-577)||(16871279-16871327)
chr4 (326-397)||(16870654-16870724)
chr4 (299-393)||(42265400-42265492)
chr4 (605-687)||(24225768-24225851)
chr4 (183-225)||(16870396-16870438)
chr4 (437-477)||(16870798-16870838)
chr4 (477-517)||(24225506-24225546)
chr4 (480-535)||(16870685-16870738)
chr4 (438-498)||(16870705-16870766)
chr4 (477-516)||(42265453-42265492)
chr4 (480-517)||(42265426-42265462)
chr4 (397-425)||(7259335-7259363)
[»] chr6 (26 HSPs)
chr6 (527-692)||(28063341-28063506)
chr6 (422-516)||(21862276-21862371)
chr6 (417-509)||(28063589-28063679)
chr6 (479-540)||(21862270-21862332)
chr6 (437-498)||(13167536-13167597)
chr6 (591-655)||(33424299-33424363)
chr6 (326-397)||(21862241-21862311)
chr6 (529-577)||(9291076-9291124)
chr6 (318-411)||(21862043-21862137)
chr6 (438-509)||(21862102-21862173)
chr6 (326-396)||(21862144-21862213)
chr6 (326-414)||(28063528-28063618)
chr6 (481-540)||(28063621-28063678)
chr6 (491-540)||(13167527-13167576)
chr6 (358-413)||(28063622-28063678)
chr6 (422-498)||(21862179-21862259)
chr6 (439-497)||(13167445-13167502)
chr6 (479-525)||(21862173-21862219)
chr6 (480-537)||(21862082-21862137)
chr6 (480-520)||(10741529-10741569)
chr6 (237-282)||(13167367-13167412)
chr6 (189-230)||(28063772-28063813)
chr6 (238-306)||(13097907-13097975)
chr6 (326-358)||(13167579-13167611)
chr6 (326-362)||(21862335-21862371)
chr6 (479-539)||(28063529-28063589)
[»] chr7 (44 HSPs)
chr7 (111-332)||(21813696-21813918)
chr7 (590-682)||(21814149-21814241)
chr7 (438-517)||(44338338-44338416)
chr7 (183-332)||(11828578-11828721)
chr7 (183-310)||(46963841-46963974)
chr7 (422-509)||(15623052-15623139)
chr7 (326-397)||(15623104-15623174)
chr7 (418-509)||(15623145-15623236)
chr7 (295-413)||(21813819-21813940)
chr7 (438-509)||(44338430-44338500)
chr7 (326-413)||(44338287-44338375)
chr7 (316-397)||(11828575-11828656)
chr7 (326-397)||(15623197-15623267)
chr7 (253-363)||(11828578-11828688)
chr7 (183-310)||(44338205-44338333)
chr7 (326-413)||(44338379-44338467)
chr7 (479-540)||(44338500-44338561)
chr7 (326-402)||(15623006-15623081)
chr7 (520-588)||(21813995-21814063)
chr7 (326-413)||(44338471-44338560)
chr7 (438-486)||(44338522-44338570)
chr7 (529-577)||(46963499-46963547)
chr7 (144-275)||(6530511-6530643)
chr7 (479-540)||(15623084-15623145)
chr7 (326-424)||(46963788-46963887)
chr7 (441-509)||(15623238-15623306)
chr7 (480-540)||(44338318-44338376)
chr7 (480-540)||(44338410-44338468)
chr7 (629-690)||(11828263-11828324)
chr7 (268-341)||(21813823-21813896)
chr7 (480-517)||(21813850-21813887)
chr7 (590-679)||(10236744-10236835)
chr7 (480-556)||(46963778-46963856)
chr7 (479-525)||(15623192-15623238)
chr7 (628-689)||(24486819-24486880)
chr7 (480-523)||(11828572-11828615)
chr7 (479-522)||(15623009-15623052)
chr7 (394-424)||(26403153-26403183)
chr7 (394-424)||(44338654-44338684)
chr7 (477-542)||(21813878-21813943)
chr7 (521-562)||(24487013-24487054)
chr7 (477-514)||(24487088-24487125)
chr7 (477-517)||(11828609-11828649)
chr7 (320-360)||(24487088-24487128)
[»] chr2 (25 HSPs)
chr2 (111-374)||(1173541-1173809)
chr2 (183-413)||(38584083-38584322)
chr2 (237-413)||(1173469-1173647)
chr2 (422-498)||(1173447-1173523)
chr2 (422-509)||(1173343-1173430)
chr2 (183-310)||(8986129-8986262)
chr2 (326-423)||(1173273-1173372)
chr2 (326-410)||(1173379-1173465)
chr2 (479-539)||(1173283-1173343)
chr2 (480-540)||(1173468-1173528)
chr2 (479-536)||(1173379-1173436)
chr2 (529-577)||(8986555-8986603)
chr2 (477-548)||(38584074-38584145)
chr2 (326-397)||(8986216-8986286)
chr2 (418-476)||(1173283-1173341)
chr2 (527-563)||(32290827-32290863)
chr2 (535-578)||(1173171-1173214)
chr2 (590-680)||(2484652-2484744)
chr2 (237-310)||(32290565-32290642)
chr2 (234-282)||(32290597-32290645)
chr2 (477-517)||(38584202-38584242)
chr2 (422-477)||(38584082-38584137)
chr2 (475-517)||(32290556-32290598)
chr2 (480-556)||(8986247-8986327)
chr2 (477-517)||(38584136-38584176)
[»] chr5 (21 HSPs)
chr5 (111-310)||(9511654-9511854)
chr5 (326-509)||(24136891-24137075)
chr5 (422-540)||(24136927-24137043)
chr5 (183-310)||(11335415-11335537)
chr5 (480-546)||(11335364-11335430)
chr5 (326-395)||(24137046-24137114)
chr5 (300-414)||(9511782-9511899)
chr5 (590-666)||(9512187-9512263)
chr5 (520-575)||(24137213-24137268)
chr5 (316-423)||(11335361-11335469)
chr5 (477-540)||(24136919-24136981)
chr5 (479-565)||(24137075-24137165)
chr5 (520-573)||(9512063-9512116)
chr5 (465-517)||(24136876-24136928)
chr5 (264-343)||(9511777-9511856)
chr5 (183-230)||(24136725-24136772)
chr5 (326-394)||(9511777-9511845)
chr5 (483-517)||(9511811-9511845)
chr5 (477-539)||(9511836-9511898)
chr5 (422-476)||(11335371-11335425)
chr5 (326-373)||(24136808-24136855)
[»] chr3 (17 HSPs)
chr3 (590-682)||(16462689-16462781)
chr3 (326-424)||(42530736-42530835)
chr3 (183-343)||(50295478-50295636)
chr3 (422-509)||(46692012-46692099)
chr3 (479-540)||(46692044-46692105)
chr3 (319-413)||(46692045-46692141)
chr3 (480-546)||(42530767-42530831)
chr3 (519-577)||(50295901-50295959)
chr3 (265-411)||(50295527-50295677)
chr3 (527-577)||(42531001-42531051)
chr3 (527-577)||(46691878-46691928)
chr3 (466-517)||(42530722-42530773)
chr3 (479-548)||(46691942-46692012)
chr3 (418-474)||(50295620-50295677)
chr3 (326-397)||(46691970-46692041)
chr3 (254-293)||(2593560-2593599)
chr3 (477-509)||(50295554-50295586)
[»] chr1 (17 HSPs)
chr1 (479-548)||(15629922-15629990)
chr1 (183-332)||(2072369-2072519)
chr1 (480-540)||(15630022-15630081)
chr1 (183-332)||(2075899-2076049)
chr1 (422-498)||(15630001-15630076)
chr1 (326-420)||(15629924-15630019)
chr1 (331-413)||(15630023-15630107)
chr1 (316-389)||(19825091-19825164)
chr1 (317-399)||(2072364-2072446)
chr1 (317-399)||(2075894-2075976)
chr1 (196-324)||(19825094-19825223)
chr1 (529-577)||(15629787-15629835)
chr1 (477-517)||(19825117-19825157)
chr1 (300-363)||(15630044-15630107)
chr1 (569-655)||(11993300-11993386)
chr1 (268-332)||(15630044-15630108)
chr1 (485-517)||(15630075-15630107)
[»] chr8 (19 HSPs)
chr8 (438-517)||(20242015-20242093)
chr8 (438-517)||(20250974-20251052)
chr8 (438-509)||(20242107-20242177)
chr8 (326-413)||(20241964-20242052)
chr8 (326-413)||(20251015-20251103)
chr8 (183-310)||(20241882-20242010)
chr8 (326-413)||(20242056-20242144)
chr8 (326-413)||(20250923-20251011)
chr8 (183-310)||(20251057-20251185)
chr8 (479-540)||(20242177-20242238)
chr8 (326-413)||(20242148-20242237)
chr8 (438-486)||(20242199-20242247)
chr8 (480-540)||(20241995-20242053)
chr8 (480-540)||(20242087-20242145)
chr8 (480-540)||(20250922-20250980)
chr8 (480-540)||(20251014-20251072)
chr8 (438-486)||(20250913-20250960)
chr8 (394-424)||(20242331-20242361)
chr8 (394-424)||(20250799-20250829)
[»] scaffold0499 (2 HSPs)
scaffold0499 (238-337)||(7233-7329)
scaffold0499 (481-510)||(7304-7333)


Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 92 - 690
Target Start/End: Original strand, 54147477 - 54148077
Alignment:
Q  92 ggtttggcttgattcattgtggttcatattggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgctttcaatttg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||    
T  54147477 ggtttggcttgattcattgtggttcatattggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcattttgaatttg 54147576  T
Q  192 tttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatt----tgtttgtttgatgagtcaggtg 287  Q
    ||||||||||||||||||||||||||| ||||||||||| |  | |||||||||| |||||||||||||  |||    |||||||||| || |||| |||    
T  54147577 tttggttgttaggtgagtcaagatagtcctcacaattggtt--tgtttgtttggtaggtcaagtgctcactattggattgtttgtttggtgggtcaagtg 54147674  T
Q  288 ctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaa 387  Q
    |||| | |||  ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54147675 ctcataatttgtttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaa 54147774  T
Q  388 tttggtttct--cccccttttgattcttttgattgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggt 485  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| |||||    
T  54147775 tttggtttctttcccccttttgattcttctgattgattgtttggtgggtcgagtgctcataatttggtttcttctcccc-ttttgattcttcaagttggt 54147873  T
Q  486 tgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgcacttctcccacttttggtgattctttggttgtttttct 585  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  54147874 tgtttggtgagtcgagtgctcacaatttggtttcttctcc-ccttttgattcttctgattgcacttctcccacttttgatgattctttggttgtttctct 54147972  T
Q  586 ctcgattggttcttctatatggttgcttctccctaccaatttttgtttggtttagtttgaaatggttcttctacttggatgatttctctctttggctgat 685  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54147973 ctcgattggttcttctgtatggttgcttctccctaccaatttttgtttggtttagtttgaaatggttcttctacttggataatttctctctttggctgat 54148072  T
Q  686 tgatg 690  Q
    |||||    
T  54148073 tgatg 54148077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 183 - 310
Target Start/End: Original strand, 16870567 - 16870700
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 276  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  16870567 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 16870666  T
Q  277 tgagtcaggtgctcacactttagttgtttggtga 310  Q
    ||||||   | |||||||||| ||||||||||||    
T  16870667 tgagtcgatttctcacactttggttgtttggtga 16870700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 479 - 556
Target Start/End: Original strand, 16870777 - 16870858
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc----tgattgcacttctccc 556  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| | |||| |||||||    ||||||||||||||||    
T  16870777 atttggttgtttcgtgagtcgagtgctcataatttggtttcttctccccttttttattcttctcattgattgcacttctccc 16870858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 529 - 577
Target Start/End: Original strand, 16871279 - 16871327
Alignment:
Q  529 ttttgattcttctgattgcacttctcccacttttggtgattctttggtt 577  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  16871279 ttttgattcttctaattgcacttctcccacttttgatgattctttggtt 16871327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 16870654 - 16870724
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 397  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||    
T  16870654 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttct 16870724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 393
Target Start/End: Original strand, 42265400 - 42265492
Alignment:
Q  299 gttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt 393  Q
    |||||||||||| | | ||||||||  ||||||||||||||||||| ||| |||||| |||||||||||||||| |   ||||||||||||||||    
T  42265400 gttgtttggtga-tcaagtgctcactgtttggttgtttggtgagtcgagt-ctcacaatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 605 - 687
Target Start/End: Original strand, 24225768 - 24225851
Alignment:
Q  605 tggttgcttctccctaccaatttttgtttggtttagtttgaaatggttcttct-acttggatgatttctctctttggctgattg 687  Q
    |||||| ||||||||||| ||| |||||||||||| ||||||||||||||| |   ||||||| || |||||||||| ||||||    
T  24225768 tggttgtttctccctaccgattcttgtttggtttaatttgaaatggttcttatgttttggatggttactctctttggttgattg 24225851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 16870396 - 16870438
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcaca 225  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  16870396 ttcaatttgtttggttgtttggtgagtcaaaatagtgctcaca 16870438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 16870798 - 16870838
Alignment:
Q  437 agtgctcataatttggtttcttctcccccttttgattcttc 477  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  16870798 agtgctcataatttggtttcttctccccttttttattcttc 16870838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 517
Target Start/End: Original strand, 24225506 - 24225546
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  24225506 caatttggttgtttggtgaatcgagtgcttacaatttggtt 24225546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 535
Target Start/End: Original strand, 16870685 - 16870738
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgat 535  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||    
T  16870685 tttggttgtttggtgag-catgtgctcacaatttggtttcttctcc-ccttttgat 16870738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 498
Target Start/End: Original strand, 16870705 - 16870766
Alignment:
Q  438 gtgctcataatttggtttcttctcccccttttg--attcttcaatttggttgtttggtgagtc 498  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||||||||| || |||||||    
T  16870705 gtgctcacaatttggtttcttct-ccccttttgatattcttcaatttggttgattagtgagtc 16870766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 516
Target Start/End: Original strand, 42265453 - 42265492
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttggt 516  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  42265453 caatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 42265426 - 42265462
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42265426 tttggttgtttggtgagtcgagt-ctcacaatttggtt 42265462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 397 - 425
Target Start/End: Complemental strand, 7259363 - 7259335
Alignment:
Q  397 tcccccttttgattcttttgattgattgt 425  Q
    |||||||||||||||||||||||||||||    
T  7259363 tcccccttttgattcttttgattgattgt 7259335  T

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Target: chr6 (Bit Score: 110; Significance: 5e-55; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 527 - 692
Target Start/End: Complemental strand, 28063506 - 28063341
Alignment:
Q  527 ccttttgattcttctgattgcacttctcccacttttggtgattctttggttgtttttctctcgattggttcttctatatggttgcttctccctaccaatt 626  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||| || |||||||||| | |||||||||||||||||||  ||     
T  28063506 ccttttgatccttctgattgcatttctcccacttttgatgattctttggttgtttctctatcaattggttcttttgtatggttgcttctccctactgatg 28063407  T
Q  627 tttgtttggtttagtttgaaatggttcttctacttggatgatttctctctttggctgattgatgat 692  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  28063406 cttgtttggtttagtttgaaatggttcttctgcttggatgatttctctctttggctggttgatgat 28063341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 21862276 - 21862371
Alignment:
Q  422 ttgtttggtgggtgaagtgctcataatttggtttcttctccccc-ttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggt 516  Q
    |||||||||| ||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||    
T  21862276 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattcttcaatttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 417 - 509
Target Start/End: Complemental strand, 28063679 - 28063589
Alignment:
Q  417 attgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 509  Q
    |||| |||||||||| || | ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| ||||||    
T  28063679 attggttgtttggtgagtcaggtgctcacaatttggtttcttctccc--ttttgattcttcaatttggttgtttggtgagtctagttctcaca 28063589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 21862270 - 21862332
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctcc-ttttgattcttc 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  21862270 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattcttc 21862332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 437 - 498
Target Start/End: Original strand, 13167536 - 13167597
Alignment:
Q  437 agtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 498  Q
    |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13167536 agtgctcacagtttggtttcttctcccccttctgattcttcaatttggttgtttggtgagtc 13167597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 591 - 655
Target Start/End: Complemental strand, 33424363 - 33424299
Alignment:
Q  591 ttggttcttctatatggttgcttctccctaccaatttttgtttggtttagtttgaaatggttctt 655  Q
    ||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  33424363 ttggttcttctctatggttgcttctccttaccgattcttgtttggtttagtttgaaatggttctt 33424299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 21862241 - 21862311
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 397  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||   ||||||||||||||||||||    
T  21862241 tttggttgtttggtgagtctagctctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtttct 21862311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 529 - 577
Target Start/End: Complemental strand, 9291124 - 9291076
Alignment:
Q  529 ttttgattcttctgattgcacttctcccacttttggtgattctttggtt 577  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9291124 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 9291076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 318 - 411
Target Start/End: Original strand, 21862043 - 21862137
Alignment:
Q  318 gctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattc 411  Q
    ||||||| |||| |||||||||||||| | ||||||||||||||||||||| ||||  | ||||||||||||||||||||   |||||||||||||    
T  21862043 gctcacaatttgcttgtttggtgagtcgaattctcacattttggttgtttgttgagcgt-gtgctcacaatttggtttcttctccccttttgattc 21862137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 438 - 509
Target Start/End: Original strand, 21862102 - 21862173
Alignment:
Q  438 gtgctcataatttggtttcttctcccccttttgattc-ttcaatttggttgtttggtgagtcgagtgctcaca 509  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||    
T  21862102 gtgctcacaatttggtttcttctcccc-ttttgattcgttcaatttggttgtttggtgagtctagttctcaca 21862173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 21862144 - 21862213
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttc 396  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||  ||||||||||    
T  21862144 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgagtgctcaatatttggtttc 21862213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 414
Target Start/End: Complemental strand, 28063618 - 28063528
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct---cccccttttgattcttt 414  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||   | ||| ||||||| |||||   |||||||||||||||||    
T  28063618 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtaagttgaattctcccaatttgatttcttcacccccttttgattcttt 28063528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 481 - 540
Target Start/End: Complemental strand, 28063678 - 28063621
Alignment:
Q  481 ttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||    
T  28063678 ttggttgtttggtgagtcaggtgctcacaatttggtttcttctc--ccttttgattcttc 28063621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 540
Target Start/End: Original strand, 13167527 - 13167576
Alignment:
Q  491 ggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  13167527 ggtgagtcgagtgctcacagtttggtttcttctcccccttctgattcttc 13167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 28063678 - 28063622
Alignment:
Q  358 ttggttgtttggtgagtttggtgctcacaatttggtttc-tcccccttttgattctt 413  Q
    |||||||||||||||||  |||||||||||||||||||| || ||||||||||||||    
T  28063678 ttggttgtttggtgagtcaggtgctcacaatttggtttcttctcccttttgattctt 28063622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 422 - 498
Target Start/End: Original strand, 21862179 - 21862259
Alignment:
Q  422 ttgtttggtgggtgaagtgctcataatttggtttcttctccccc----ttttgattcttcaatttggttgtttggtgagtc 498  Q
    |||||||||| ||  ||||||||  |||||||||| ||||||||    || ||||||||||||||||||||||||||||||    
T  21862179 ttgtttggtgagtcgagtgctcaatatttggtttcctctcccccccccttctgattcttcaatttggttgtttggtgagtc 21862259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 439 - 497
Target Start/End: Original strand, 13167445 - 13167502
Alignment:
Q  439 tgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagt 497  Q
    |||||| |||||||| |||||||||| ||||| ||||||||||||||||| ||||||||    
T  13167445 tgctcacaatttggtgtcttctcccc-ttttggttcttcaatttggttgtgtggtgagt 13167502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 479 - 525
Target Start/End: Original strand, 21862173 - 21862219
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 525  Q
    |||||||||||||||||||||||||||||  |||||||||| |||||    
T  21862173 atttggttgtttggtgagtcgagtgctcaatatttggtttcctctcc 21862219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 537
Target Start/End: Original strand, 21862082 - 21862137
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattc 537  Q
    |||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||    
T  21862082 tttggttgtttgttgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattc 21862137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 10741529 - 10741569
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttct 520  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  10741529 tttggttgttcggtgagtcgagtactcacaatttggtttct 10741569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 13167367 - 13167412
Alignment:
Q  237 tttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 282  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||    
T  13167367 tttgtttggtgggtcaagtgctcgcaatttgcttgtttggtgagtc 13167412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 28063813 - 28063772
Alignment:
Q  189 ttgtttggttgttaggtgagtcaagatagtgctcacaattgg 230  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||    
T  28063813 ttgtttggttgttaggtgagttaagattgtgctcacatttgg 28063772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 13097907 - 13097975
Alignment:
Q  238 ttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttg 306  Q
    ||||||| || ||| |||||||| || ||||||||||| |||| || ||||||||| ||| ||||||||    
T  13097907 ttgtttgatgagtcgagtgctcacaaattgtttgtttgttgagacaagtgctcacaatttggttgtttg 13097975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 13167579 - 13167611
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattt 358  Q
    |||||||||||||||||||||||||| ||||||    
T  13167579 tttggttgtttggtgagtctagttcttacattt 13167611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 21862335 - 21862371
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggt 362  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  21862335 tttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 28063589 - 28063529
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattctt 539  Q
    ||||||||||||||| ||| || | ||| ||||||| ||||||| || |||||||||||||    
T  28063589 atttggttgtttggtaagttgaattctcccaatttgatttcttcacccccttttgattctt 28063529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 111 - 332
Target Start/End: Original strand, 21813696 - 21813918
Alignment:
Q  111 tggttcatattggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgct---ttcaatttgtttggttgttaggtga 207  Q
    |||||| ||||||||||||||||||||||||  ||||||||||| ||||||| ||||||||||||||||| |   |||||||||||||||||||||| ||    
T  21813696 tggttcgtattggttcgtcaatttgtctttgtctggttcgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcga 21813795  T
Q  208 gtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttgg 307  Q
    ||||||||| | |||||||||||   |||||||||||||| |||||||||||| | |||| ||||||| ||||||  ||||||||| ||| |||| ||||    
T  21813796 gtcaagatattcctcacaattgg--tttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttgg 21813893  T
Q  308 tgaattaggtgctcacactttggtt 332  Q
    |||| || || | |||| |||||||    
T  21813894 tgaaataagtacccacaatttggtt 21813918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 590 - 682
Target Start/End: Original strand, 21814149 - 21814241
Alignment:
Q  590 attggttcttctatatggttgcttctccctaccaatttttgtttggtttagtttgaaatggttcttctacttggatgatttctctctttggct 682  Q
    |||||||||| | |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21814149 attggttcttttgtatgattgcttctccctaccaattcttgtttggtttagtttgaaatggttcttctgcttggatgatttctctctttggct 21814241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 438 - 517
Target Start/End: Original strand, 44338338 - 44338416
Alignment:
Q  438 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  44338338 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 44338416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 183 - 332
Target Start/End: Complemental strand, 11828721 - 11828578
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 282  Q
    ||||||||||||| ||||  | |||| ||||||||||||||||||| | ||      ||||||||||||||||||||| |||||| |||| || ||||||    
T  11828721 ttcaatttgtttgattgtaggatgagacaagatagtgctcacaatttgtta------gtttggtgggtcaagtgctcacaatttggttgtctggtgagtc 11828628  T
Q  283 aggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 332  Q
     |||||||||| ||| |||||||||||| ||| || |||||| |||||||    
T  11828627 gggtgctcacattttggttgtttggtgagttaagtactcacaatttggtt 11828578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 46963974 - 46963841
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 276  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  46963974 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 46963875  T
Q  277 tgagtcaggtgctcacactttagttgtttggtga 310  Q
    ||||||   | |||||||||| ||||||||||||    
T  46963874 tgagtcgatttctcacactttggttgtttggtga 46963841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 422 - 509
Target Start/End: Complemental strand, 15623139 - 15623052
Alignment:
Q  422 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 509  Q
    |||||||||| ||  |||||||| ||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||||    
T  15623139 ttgtttggtgagttgagtgctcacaattttgtttcttctccccctactgattcttcaatttggttgtttggtgagtctagttctcaca 15623052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 15623174 - 15623104
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 397  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||    
T  15623174 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaattttgtttct 15623104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 418 - 509
Target Start/End: Complemental strand, 15623236 - 15623145
Alignment:
Q  418 ttgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 509  Q
    |||||||||||||| ||  |||||||| ||||| |||||||||||||||   ||||||||||||||||||||||||||||| ||| ||||||    
T  15623236 ttgattgtttggtgagttgagtgctcacaattttgtttcttctccccctaccgattcttcaatttggttgtttggtgagtctagttctcaca 15623145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 295 - 413
Target Start/End: Original strand, 21813819 - 21813940
Alignment:
Q  295 tttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttgg-- 392  Q
    |||| ||||||||||| | | ||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||  |  || | ||||||||||      
T  21813819 tttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtgaaataagtacccacaatttggtt 21813918  T
Q  393 -tttctcccccttttgattctt 413  Q
     |||||||||||||||||||||    
T  21813919 ttttctcccccttttgattctt 21813940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 509
Target Start/End: Original strand, 44338430 - 44338500
Alignment:
Q  438 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 509  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  44338430 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttggtgagtagagttctcaca 44338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 44338287 - 44338375
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 413  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  44338287 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 44338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 316 - 397
Target Start/End: Complemental strand, 11828656 - 11828575
Alignment:
Q  316 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 397  Q
    ||||||||| ||||||||| |||||||||  || ||||||||||||||||||||||||||  || |||||||||||||||||    
T  11828656 gtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactcacaatttggtttct 11828575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 15623267 - 15623197
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 397  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||| ||||||    
T  15623267 tttggttgtttggtgagtctagttctcaca-tttgattgtttggtgagttgagtgctcacaattttgtttct 15623197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 11828688 - 11828578
Alignment:
Q  253 agtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctc 352  Q
    |||||||| |||||||| ||||| || |||| ||||||||| ||| ||||| |||||| |  |||||||||| ||||||||||||||||||  ||| |||    
T  11828688 agtgctcacaatttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactc 11828589  T
Q  353 acattttggtt 363  Q
    ||| |||||||    
T  11828588 acaatttggtt 11828578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 183 - 310
Target Start/End: Original strand, 44338205 - 44338333
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 280  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  44338205 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 44338303  T
Q  281 tcaggtgctcacactttagttgtttggtga 310  Q
    ||  || |||||| ||| ||||||||||||    
T  44338304 tcgagttctcacattttggttgtttggtga 44338333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 44338379 - 44338467
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 413  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  44338379 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 44338467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 44338500 - 44338561
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  44338500 atttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattcttc 44338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 15623081 - 15623006
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctccccc 402  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||| ||| ||||||| ||||    
T  15623081 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgtgtgctcacgattcggtttcttcccc 15623006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 520 - 588
Target Start/End: Original strand, 21813995 - 21814063
Alignment:
Q  520 ttctcctccttttgattcttctgattgcacttctcccacttttggtgattctttggttgtttttctctc 588  Q
    |||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  21813995 ttctcccccttttgattgttctaattgcacttctcccacttttgatgattctttggttatttctctctc 21814063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 44338471 - 44338560
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 413  Q
    ||||||||||||||||||  |||||||||| ||||||||| ||||||||   ||||||||||||||||   ||||||||||||||||||||    
T  44338471 tttggttgtttggtgagtagagttctcaca-tttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattctt 44338560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 44338522 - 44338570
Alignment:
Q  438 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 486  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44338522 gtgctcacaatttggtttcttctcccccttttgattcttcaatttggtt 44338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 529 - 577
Target Start/End: Complemental strand, 46963547 - 46963499
Alignment:
Q  529 ttttgattcttctgattgcacttctcccacttttggtgattctttggtt 577  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46963547 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 46963499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 6530511 - 6530643
Alignment:
Q  144 tggttcgtttggttcagtttggtttgatttggattcgcttt---caatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttg 240  Q
    |||||| |||||||| |||  |||||||||||||||| |||   ||||||||||| ||||| ||||||||||||||||  ||||||||||   || | ||    
T  6530511 tggttcatttggttccgttcagtttgatttggattcgttttgttcaatttgtttgattgttgggtgagtcaagatagtattcacaattgg--tttgtctg 6530608  T
Q  241 tttggtgggtcaagtgctcataatttgtttgtttg 275  Q
    ||||||| ||||| || ||| |||||| |||||||    
T  6530609 tttggtgagtcaaatgttcacaatttggttgtttg 6530643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 15623145 - 15623084
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| |||  |||||||||    
T  15623145 atttggttgtttggtgagttgagtgctcacaattttgtttcttctccccctactgattcttc 15623084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 424
Target Start/End: Complemental strand, 46963887 - 46963788
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 423  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||| |||||| | |||||||    
T  46963887 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttcttctcccctttttattcttctcattgatt 46963789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 441 - 509
Target Start/End: Complemental strand, 15623306 - 15623238
Alignment:
Q  441 ctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 509  Q
    |||| ||||||||||||||||||| |  || ||||||||||||||||||||||||||| ||| ||||||    
T  15623306 ctcacaatttggtttcttctccccgtactggttcttcaatttggttgtttggtgagtctagttctcaca 15623238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 540
Target Start/End: Original strand, 44338318 - 44338376
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  44338318 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 44338376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 540
Target Start/End: Original strand, 44338410 - 44338468
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  44338410 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 44338468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 629 - 690
Target Start/End: Complemental strand, 11828324 - 11828263
Alignment:
Q  629 tgtttggtttagtttgaaatggttcttctacttggatgatttctctctttggctgattgatg 690  Q
    ||||||| || ||||||  ||||||||||||||||||| ||||||||||||| |||||||||    
T  11828324 tgtttggattggtttgacttggttcttctacttggatggtttctctctttggttgattgatg 11828263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 21813823 - 21813896
Alignment:
Q  268 tttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtga 341  Q
    |||||||| ||||||| ||||||||||||| |||||||||||| |   ||||||||| |||||||| |||||||    
T  21813823 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtga 21813896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 21813850 - 21813887
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21813850 tttggttgtttggtgagtcgagtgctcacaatttggtt 21813887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 679
Target Start/End: Original strand, 10236744 - 10236835
Alignment:
Q  590 attggttcttctatatggttgcttctccctaccaat--ttttgtttggtttagtttgaaatggttcttctacttggatgatttctctctttg 679  Q
    ||||||||||||||||||||||||||||||| |  |  |||||||||| || ||||||  |||||||| |  ||||||||||| ||||||||    
T  10236744 attggttcttctatatggttgcttctccctagcggttcttttgtttggatttgtttgacttggttcttttgtttggatgatttttctctttg 10236835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 556
Target Start/End: Complemental strand, 46963856 - 46963778
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc----tgattgcacttctccc 556  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||| |||||| |||||||    ||||||||||||||||    
T  46963856 tttggttgtttggtgag-catgtgctcacaatttggtttcttctcc-cctttttattcttctcattgattgcacttctccc 46963778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 479 - 525
Target Start/End: Complemental strand, 15623238 - 15623192
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 525  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  15623238 atttgattgtttggtgagttgagtgctcacaattttgtttcttctcc 15623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 689
Target Start/End: Complemental strand, 24486880 - 24486819
Alignment:
Q  628 ttgtttggtttagtttgaaatggttcttctacttggatgatttctctctttggctgattgat 689  Q
    ||||||||||||| || |||||||||||||  ||||||| |||||||||||| ||| |||||    
T  24486880 ttgtttggtttagctttaaatggttcttcttattggatggtttctctctttgcctggttgat 24486819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 523
Target Start/End: Complemental strand, 11828615 - 11828572
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttct 523  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  11828615 tttggttgtttggtgagttaagtactcacaatttggtttcttct 11828572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 522
Target Start/End: Complemental strand, 15623052 - 15623009
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttc 522  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||    
T  15623052 atttggttgtttggtgagtcgtgtgctcacgattcggtttcttc 15623009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 424
Target Start/End: Original strand, 26403153 - 26403183
Alignment:
Q  394 ttctcccccttttgattcttttgattgattg 424  Q
    |||||||||||||||||||||||||||||||    
T  26403153 ttctcccccttttgattcttttgattgattg 26403183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 424
Target Start/End: Original strand, 44338654 - 44338684
Alignment:
Q  394 ttctcccccttttgattcttttgattgattg 424  Q
    |||||||||||||||||||||||||||||||    
T  44338654 ttctcccccttttgattcttttgattgattg 44338684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 542
Target Start/End: Original strand, 21813878 - 21813943
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctg 542  Q
    ||||||||||| |||||||    ||| | ||||||||||||| |||||| ||||||||||||||||    
T  21813878 caatttggttgcttggtgaaataagtacccacaatttggttttttctcccccttttgattcttctg 21813943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 562
Target Start/End: Complemental strand, 24487054 - 24487013
Alignment:
Q  521 tctcctccttttgattcttctgattgcacttctcccactttt 562  Q
    ||||||||| ||||||||| |||||||||||||| |||||||    
T  24487054 tctcctcctattgattcttttgattgcacttctctcactttt 24487013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 514
Target Start/End: Complemental strand, 24487125 - 24487088
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttg 514  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  24487125 caatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 517
Target Start/End: Complemental strand, 11828649 - 11828609
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    |||||||||||| |||||||||| ||||||||| |||||||    
T  11828649 caatttggttgtctggtgagtcgggtgctcacattttggtt 11828609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 24487128 - 24487088
Alignment:
Q  320 tcacactttggttgtttggtgagtctagttctcacattttg 360  Q
    ||||| ||||||||||||||||||| |||||||||| ||||    
T  24487128 tcacaatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 111 - 374
Target Start/End: Complemental strand, 1173809 - 1173541
Alignment:
Q  111 tggttcatattggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgctt---tcaatttgtttggttgttaggtga 207  Q
    |||||||||| ||||| ||||||||| || || ||| ||||||||||  |||  ||||||||||| |||| ||   | ||||||||||||||||||||||    
T  1173809 tggttcatatgggttcatcaatttgttttcgcttggctcgtttggtttggttcagtttgatttggtttcgtttgattaaatttgtttggttgttaggtga 1173710  T
Q  208 gtcaagatagtgctcacaattggata--ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgttt 305  Q
    ||||||||||| |||| |||||| |   || ||||||||||||||||||||||||||||||||||||||| || |||  ||||||| | |||  ||||||    
T  1173709 gtcaagatagttctcaaaattggtttgtttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgggtcgagtgctcataatttgtttgttt 1173610  T
Q  306 ggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagt 374  Q
    ||||| |   || |||| | ||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  1173609 ggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgtttggtgagt 1173541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 183 - 413
Target Start/End: Complemental strand, 38584322 - 38584083
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattat---ttgtttggtgggtcaagtgctcataatttgtttgtttgatga 279  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | | |  |   ||||||||||||| |||  |||| |||||| ||||||| |||    
T  38584322 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaatttggtttgttcgtttgtttggtgggt-aagcactcacaatttgcttgtttggtga 38584224  T
Q  280 gtcaggtgctcacactttagttgtttggt----gaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtt 375  Q
    |||  ||||||||| ||| ||||||||||    || | | ||||||||| |||||| |||||||||||  ||| |||||| |||||||||||||||||||    
T  38584223 gtcgagtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttgtttggtgagtt 38584124  T
Q  376 tggtgctcacaatttg---gtttctcccccttttgattctt 413  Q
       |||||||||||||    |||||||||||||||||||||    
T  38584123 aaatgctcacaatttgattttttctcccccttttgattctt 38584083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 237 - 413
Target Start/End: Complemental strand, 1173647 - 1173469
Alignment:
Q  237 tttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgttt 336  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||  || |||| | ||| |||||||||||| |   |||||||||  ||| ||||||    
T  1173647 tttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgttt 1173548  T
Q  337 ggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 413  Q
    |||||||  ||  |||||| |||||||||||||||||| | ||||||||||||||||   ||||| ||||||||||||||    
T  1173547 ggtgagt-aagcgctcacactttggttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattctt 1173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 422 - 498
Target Start/End: Complemental strand, 1173523 - 1173447
Alignment:
Q  422 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 498  Q
    |||||||||| ||  |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1173523 ttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattcttcaatttggttgtttggtgagtc 1173447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 422 - 509
Target Start/End: Complemental strand, 1173430 - 1173343
Alignment:
Q  422 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 509  Q
    |||||||||| ||  ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  1173430 ttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgattattcaatttggttgtttggtgagtctagttctcaca 1173343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 183 - 310
Target Start/End: Original strand, 8986129 - 8986262
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 276  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  8986129 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 8986228  T
Q  277 tgagtcaggtgctcacactttagttgtttggtga 310  Q
    ||||||   | |||||||||| ||||||||||||    
T  8986229 tgagtcgatttctcacactttggttgtttggtga 8986262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 326 - 423
Target Start/End: Complemental strand, 1173372 - 1173273
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattcttttgattgat 422  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  |||||||    
T  1173372 tttggttgtttggtgagtctagttctcaca-tttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattcttgggattgat 1173274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 1173465 - 1173379
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgatt 410  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||| |||||||||||   |||||||||||||||||    
T  1173465 tttggttgtttggtgagtctaattctcacattt-ggttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgatt 1173379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 1173343 - 1173283
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattctt 539  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  1173343 atttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattctt 1173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 480 - 540
Target Start/End: Complemental strand, 1173528 - 1173468
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  1173528 tttggttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattcttc 1173468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 479 - 536
Target Start/End: Complemental strand, 1173436 - 1173379
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgatt 536  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  1173436 atttggttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgatt 1173379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 529 - 577
Target Start/End: Original strand, 8986555 - 8986603
Alignment:
Q  529 ttttgattcttctgattgcacttctcccacttttggtgattctttggtt 577  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8986555 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 8986603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 548
Target Start/End: Complemental strand, 38584145 - 38584074
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgca 548  Q
    |||||||||||||||||||||  | ||||||||||||| ||| |||||| ||||||||||||||| ||||||    
T  38584145 caatttggttgtttggtgagttaaatgctcacaatttgattttttctcccccttttgattcttctaattgca 38584074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 8986216 - 8986286
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 397  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||    
T  8986216 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttct 8986286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 1173341 - 1173283
Alignment:
Q  418 ttgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattctt 476  Q
    |||||||||| ||| ||  |||||||| |||||||||||||||||||||||||||||||    
T  1173341 ttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattctt 1173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 563
Target Start/End: Original strand, 32290827 - 32290863
Alignment:
Q  527 ccttttgattcttctgattgcacttctcccacttttg 563  Q
    |||||||||||||||||||||||||||||||||||||    
T  32290827 ccttttgattcttctgattgcacttctcccacttttg 32290863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 535 - 578
Target Start/End: Complemental strand, 1173214 - 1173171
Alignment:
Q  535 ttcttctgattgcacttctcccacttttggtgattctttggttg 578  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  1173214 ttcttctgattgcacttcttccacttttgatgattctttggttg 1173171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 680
Target Start/End: Original strand, 2484652 - 2484744
Alignment:
Q  590 attggttcttctatatggttgcttctccctaccaatt--tttgtttggtttagtttgaaatggttcttctacttggatgatttctctctttgg 680  Q
    ||||||||||||||| |||||||||||  | ||  ||  |||||||||||| ||||||  |||||||| || ||||||| |||||||||||||    
T  2484652 attggttcttctataaggttgcttctcaatgccggttattttgtttggtttggtttgacttggttcttttatttggatggtttctctctttgg 2484744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 32290565 - 32290642
Alignment:
Q  237 tttgtttggtgggtcaagtgctcataatttg----tttgtttgatgagtcaggtgctcacactttagttgtttggtga 310  Q
    |||||||||||||||||||||||| ||||||    ||| |||| || |||| ||||||||| ||| ||||||||||||    
T  32290565 tttgtttggtgggtcaagtgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtga 32290642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 32290597 - 32290645
Alignment:
Q  234 ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 282  Q
    |||||| |||||||||||||||||||| |||||| ||||||| ||||||    
T  32290597 ttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagtc 32290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 517
Target Start/End: Complemental strand, 38584242 - 38584202
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  38584242 caatttgcttgtttggtgagtcgagtgctcacattttggtt 38584202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 477
Target Start/End: Complemental strand, 38584137 - 38584082
Alignment:
Q  422 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttc 477  Q
    |||||||||| || || |||||| |||||| ||| |||||||||||||||||||||    
T  38584137 ttgtttggtgagttaaatgctcacaatttgattttttctcccccttttgattcttc 38584082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 517
Target Start/End: Original strand, 32290556 - 32290598
Alignment:
Q  475 ttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||    
T  32290556 ttcaatttgtttgtttggtgggtcaagtgctcacaatttggtt 32290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 480 - 556
Target Start/End: Original strand, 8986247 - 8986327
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttc-ttctcctccttttgattcttc----tgattgcacttctccc 556  Q
    ||||||||||||||||| |  ||||||||||||||||||| |||||| | |||| |||||||    ||||||||||||||||    
T  8986247 tttggttgtttggtgag-catgtgctcacaatttggtttctttctccccttttttattcttctcattgattgcacttctccc 8986327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 517
Target Start/End: Complemental strand, 38584176 - 38584136
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  38584176 caatttggtagtttggtgagttaagtgctcacaatttggtt 38584136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 111 - 310
Target Start/End: Original strand, 9511654 - 9511854
Alignment:
Q  111 tggttcatattggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgct---ttcaatttgtttggttgttaggtga 207  Q
    ||||| || ||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||   || ||||||||||||||||||||||    
T  9511654 tggttaattttgtttcgtcaatttgtctttgcatggttcgtgtggttcagttcggtttgatttggattcgcttggttgaatttgtttggttgttaggtga 9511753  T
Q  208 gtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttgg 307  Q
    || |||||||| ||||||||| |   || ||||||||||| ||| |||||||| | || | ||||||| ||||||  ||||||||| ||| |||||||||    
T  9511754 gttaagatagtcctcacaattcg--tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttgg 9511851  T
Q  308 tga 310  Q
    |||    
T  9511852 tga 9511854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 326 - 509
Target Start/End: Original strand, 24136891 - 24137075
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 423  Q
    ||||||||||||||||| | | |||||||| ||||||||||||||||||   ||||||||||||| ||||||  ||||||| ||||||||    ||| ||    
T  24136891 tttggttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcacaattttgtttcttccccccttctgattcttcaatttggtt 24136990  T
Q  424 gtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 509  Q
    |||||||| ||  ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  24136991 gtttggtgagtctagttctcacaatttggtttcttctccccc-tttgattcttcaatttggttgtttggtgagtctagttctcaca 24137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 422 - 540
Target Start/End: Original strand, 24136927 - 24137043
Alignment:
Q  422 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtttctt 521  Q
    |||||||||| ||  |||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  24136927 ttgtttggtgagtcgagtgctcacaattttgtttcttc-cccccttctgattcttcaatttggttgtttggtgagtctagttctcacaatttggtttctt 24137025  T
Q  522 ctcctccttttgattcttc 540  Q
    |||| || |||||||||||    
T  24137026 ctcc-ccctttgattcttc 24137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 11335537 - 11335415
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 282  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |  | ||||||||| |||||||||||||| |||||||||||||| || |      
T  11335537 ttcaatttgtttggttgtt-ggtgagtcaagatagtgctcacaattggtt--tgtttgtttggcgggtcaagtgctcacaatttgtttgtttggtggg-- 11335443  T
Q  283 aggtgctcacactttagttgtttggtga 310  Q
    | || |||||||||| ||||||||||||    
T  11335442 aagtactcacactttggttgtttggtga 11335415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 480 - 546
Target Start/End: Complemental strand, 11335430 - 11335364
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattg 546  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  11335430 tttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattcttttgattg 11335364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 24137046 - 24137114
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggttt 395  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  24137046 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaatttggttt 24137114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 9511782 - 9511899
Alignment:
Q  300 ttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttc--- 396  Q
    ||||||||||| |   |||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||   | ||||||||||| ||||       
T  9511782 ttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttgatttctta 9511881  T
Q  397 tcccccttttgattcttt 414  Q
    ||||||||||||||||||    
T  9511882 tcccccttttgattcttt 9511899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 590 - 666
Target Start/End: Original strand, 9512187 - 9512263
Alignment:
Q  590 attggttcttctatatggttgcttctccctaccaatttttgtttggtttagtttgaaatggttcttctacttggatg 666  Q
    |||||||||||| ||||||||||||| |||||| ||| ||||||||||||||| ||||||  |||||||||||||||    
T  9512187 attggttcttctgtatggttgcttcttcctaccgattcttgtttggtttagttcgaaatgactcttctacttggatg 9512263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 520 - 575
Target Start/End: Original strand, 24137213 - 24137268
Alignment:
Q  520 ttctcctccttttgattcttctgattgcacttctcccacttttggtgattctttgg 575  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24137213 ttctcccccttttgattcttctgattgcacttctcccacttttgatgattctttgg 24137268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 316 - 423
Target Start/End: Complemental strand, 11335469 - 11335361
Alignment:
Q  316 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct---cccccttttgattct 412  Q
    ||||||||| |||| |||||||||| |   ||| |||||| ||||||||||||||||||    |||||||||||||||||||   |||||||||||||||    
T  11335469 gtgctcacaatttgtttgtttggtggga--agtactcacactttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattct 11335372  T
Q  413 tttgattgatt 423  Q
    |||||||||||    
T  11335371 tttgattgatt 11335361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 540
Target Start/End: Original strand, 24136919 - 24136981
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||||||    
T  24136919 caatttggttgtttggtgagtcgagtgctcacaattttgtttcttc-cccccttctgattcttc 24136981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 565
Target Start/End: Original strand, 24137075 - 24137165
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttct-cctccttttgattcttct----gattgcacttctcccacttttggt 565  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| || ||||||| |||||||    ||||||||||||||| ||||||||    
T  24137075 atttggttgtttggtgagttgagtgctcacaatttggttt-ttctccccccttttggttcttctaatagattgcacttctcccccttttggt 24137165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 9512063 - 9512116
Alignment:
Q  520 ttctcctccttttgattcttctgattgcacttctcccacttttggtgattcttt 573  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  9512063 ttctcccccttttgattcttttgattgcacttctcccacttttgatgattcttt 9512116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 465 - 517
Target Start/End: Original strand, 24136876 - 24136928
Alignment:
Q  465 cttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    |||||||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  24136876 cttttgattcttcaatttggttgtttggtgagccgacttctcacaatttggtt 24136928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 9511777 - 9511856
Alignment:
Q  264 tttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagt 343  Q
    |||||||||||| ||||||  ||||||||||||  |||||||||||| |   ||||||||| ||||||||||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagt 9511856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 24136725 - 24136772
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattgg 230  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  24136725 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattgg 24136772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 9511777 - 9511845
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtt 394  Q
    |||| |||||||||||||| ||| |||||| || |||||||||||||||   |||||||||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 483 - 517
Target Start/End: Original strand, 9511811 - 9511845
Alignment:
Q  483 ggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    |||||||||||||||||||||||||||||||||||    
T  9511811 ggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 477 - 539
Target Start/End: Original strand, 9511836 - 9511898
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattctt 539  Q
    |||||||||||||||||||||  | | ||||||||||| |||||| ||| |||||||||||||    
T  9511836 caatttggttgtttggtgagttaaatactcacaatttgatttcttatcccccttttgattctt 9511898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 11335425 - 11335371
Alignment:
Q  422 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattctt 476  Q
    |||||||||| ||  | |||||| |||||||||||||||||||||||||||||||    
T  11335425 ttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattctt 11335371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 24136808 - 24136855
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgag 373  Q
    |||| ||||| |||||||| |||||||||||| |||||||||||||||    
T  24136808 tttgcttgttgggtgagtcgagttctcacattatggttgtttggtgag 24136855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 590 - 682
Target Start/End: Original strand, 16462689 - 16462781
Alignment:
Q  590 attggttcttctatatggttgcttctccctaccaatttttgtttggtttagtttgaaatggttcttctacttggatgatttctctctttggct 682  Q
    |||||||||| | |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16462689 attggttcttttgtatgattgcttctccctaccaattcttgtttggtttagtttgaaatggttcttctgcttggatgatttctctctttggct 16462781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 326 - 424
Target Start/End: Original strand, 42530736 - 42530835
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 423  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   ||||||||||||||| |||||||||    
T  42530736 tttggttgtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattcttctgattgatt 42530834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 183 - 343
Target Start/End: Original strand, 50295478 - 50295636
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 282  Q
    ||||||||||||||||||| | |||||  ||||||||| ||||||| |||  | ||||||| |||||||||||||||| |||||| ||||||  ||||||    
T  50295478 ttcaatttgtttggttgttggatgagttgagatagtgcacacaatttgat--tgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtc 50295575  T
Q  283 aggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagt 343  Q
      ||||||||||||  |||||||||||| ||  || |||  |||||| |||||||||||||    
T  50295576 gagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattgtttggtgagt 50295636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 422 - 509
Target Start/End: Complemental strand, 46692099 - 46692012
Alignment:
Q  422 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 509  Q
    |||||||||| ||  |||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  46692099 ttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattcttcaatttggtggtttggtgagtctagttctcaca 46692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 46692105 - 46692044
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  46692105 atttagttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattcttc 46692044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 46692141 - 46692045
Alignment:
Q  319 ctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 413  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||   ||||||||||||||||   ||||| ||||||||||||||    
T  46692141 ctcacaatttggttgtttggtgagtctaattctcaca-tttagttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattctt 46692045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 546
Target Start/End: Original strand, 42530767 - 42530831
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattg 546  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  42530767 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttctgattg 42530831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 519 - 577
Target Start/End: Original strand, 50295901 - 50295959
Alignment:
Q  519 cttctcctccttttgattcttctgattgcacttctcccacttttggtgattctttggtt 577  Q
    |||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50295901 cttctccctcttttgattcttctgattgcacttctcccacttttgatgattctttggtt 50295959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 265 - 411
Target Start/End: Original strand, 50295527 - 50295677
Alignment:
Q  265 ttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttg 364  Q
    ||||||||||  || |||| ||||||||| ||| ||||||| |||| |   |||||||||||| |||||||||||||||  |||||||  | |||| |||    
T  50295527 ttgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattg 50295626  T
Q  365 tttggtgagtttggtgctcacaatttggtttct----cccccttttgattc 411  Q
    |||||||||||  || |||| ||||||||||||    ||||||||||||||    
T  50295627 tttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 577
Target Start/End: Original strand, 42531001 - 42531051
Alignment:
Q  527 ccttttgattcttctgattgcacttctcccacttttggtgattctttggtt 577  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  42531001 ccttttgattcttctgattgcacttctcccacttttaatgattctttggtt 42531051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 577
Target Start/End: Complemental strand, 46691928 - 46691878
Alignment:
Q  527 ccttttgattcttctgattgcacttctcccacttttggtgattctttggtt 577  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  46691928 ccttttaattcttctgattgcacttctcccacttttgatgattctttggtt 46691878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 466 - 517
Target Start/End: Original strand, 42530722 - 42530773
Alignment:
Q  466 ttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  42530722 ttttgattctttaatttggttgtttggtgagtcgagttctcacactttggtt 42530773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 548
Target Start/End: Complemental strand, 46692012 - 46691942
Alignment:
Q  479 atttggttgttt-ggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgca 548  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||   | |||| |||||||||||||||    
T  46692012 atttggttgttttggtgagtcgagtgttcacaatttggtttcttctttccttttttattcttctgattgca 46691942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 50295620 - 50295677
Alignment:
Q  418 ttgattgtttggtgggtgaagtgctcataatttggtttcttct-cccccttttgattc 474  Q
    |||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||    
T  50295620 ttgattgtttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 46692041 - 46691970
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgttt-ggtgagtttggtgctcacaatttggtttct 397  Q
    |||||| |||||||||||||||||||||||||| |||||||| |||||||   ||| ||||||||||||||||    
T  46692041 tttggtggtttggtgagtctagttctcacattt-ggttgttttggtgagtcgagtgttcacaatttggtttct 46691970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 2593599 - 2593560
Alignment:
Q  254 gtgctcataatttgtttgtttgatgagtcaggtgctcaca 293  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2593599 gtgctcataatttgtttgtttgatgagtcaagtgctcaca 2593560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 509
Target Start/End: Original strand, 50295554 - 50295586
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcaca 509  Q
    |||||||||||||| ||||||||||||||||||    
T  50295554 caatttggttgtttcgtgagtcgagtgctcaca 50295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 479 - 548
Target Start/End: Complemental strand, 15629990 - 15629922
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgca 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  15629990 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc-ccttatgattcttctgattgca 15629922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 183 - 332
Target Start/End: Complemental strand, 2072519 - 2072369
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 280  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||| |  ||| |||| | ||||||| |  |||||| |||||| ||||||||||||    
T  2072519 ttcaatttgtttagttgttgggtgagtcaagatagggctcaccattggtttgattgtttggtgggtgggtgat-tgctcacaatttgattgtttgatgag 2072421  T
Q  281 tcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 332  Q
    ||  ||||||| ||||| |||||||||||| ||| || |||||| |||||||    
T  2072420 tcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtt 2072369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 480 - 540
Target Start/End: Complemental strand, 15630081 - 15630022
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15630081 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc-ccttttgattcttc 15630022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 183 - 332
Target Start/End: Complemental strand, 2076049 - 2075899
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 280  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||| |  ||| |||| | ||||||| |  |||||| |||||| |||||||| |||    
T  2076049 ttcaatttgtttagttgttgggtgagtcaagatagggctcaccattggtttaattgtttggtgggtgggtgat-tgctcacaatttggttgtttgacgag 2075951  T
Q  281 tcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 332  Q
    ||  ||||||| ||||| |||||||||||| ||| || |||||| |||||||    
T  2075950 tcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtt 2075899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 498
Target Start/End: Complemental strand, 15630076 - 15630001
Alignment:
Q  422 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 498  Q
    |||||||||| ||  |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  15630076 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttagtgagtc 15630001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 326 - 420
Target Start/End: Complemental strand, 15630019 - 15629924
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattg 420  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||||||   ||||||||||||||||||||   |||||| |||||||| ||||||    
T  15630019 tttggttgtttagtgagtctaattctcacattt-ggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttatgattcttctgattg 15629924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 331 - 413
Target Start/End: Complemental strand, 15630107 - 15630023
Alignment:
Q  331 ttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 413  Q
    |||||||||||||| ||| |||||| ||||||||||||||||||   ||||||||||||||||||||   |||||||||||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattctt 15630023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 19825164 - 19825091
Alignment:
Q  316 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatt 389  Q
    ||||||||| ||||||||||||| ||||| ||| |||||| |||||||||||||||||||  ||||||||||||    
T  19825164 gtgctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaagtgctcacaatt 19825091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 2072446 - 2072364
Alignment:
Q  317 tgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctcc 399  Q
    |||||||| |||| ||||||| |||||| ||| |||| | |||||||||||||||||||  || |||||||||||||||||||    
T  2072446 tgctcacaatttgattgtttgatgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttctcc 2072364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 2075976 - 2075894
Alignment:
Q  317 tgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctcc 399  Q
    |||||||| ||||||||||||  ||||| ||| |||| | |||||||||||||||||||  || |||||||||||||||||||    
T  2075976 tgctcacaatttggttgtttgacgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttctcc 2075894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 19825223 - 19825094
Alignment:
Q  196 gttgttaggtgagtcaagatagtgctcacaattggata--ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcaca 293  Q
    |||||| |||||||||||||| ||||||||||| | |   || |||| |||||| || ||||||||| |||||| |||||||  |||||  |||||||||    
T  19825223 gttgtttggtgagtcaagataatgctcacaatttgtttgtttgtttggttggtgagt-aagtgctcacaatttggttgtttggcgagtcgagtgctcaca 19825125  T
Q  294 ctttagttgtttggtgaattaggtgctcaca 324  Q
     ||| |||||||||||| ||| |||||||||    
T  19825124 atttggttgtttggtgagttaagtgctcaca 19825094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 577
Target Start/End: Complemental strand, 15629835 - 15629787
Alignment:
Q  529 ttttgattcttctgattgcacttctcccacttttggtgattctttggtt 577  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  15629835 ttttgattcttctgattgcacttctccaacttttgatgattttttggtt 15629787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 477 - 517
Target Start/End: Complemental strand, 19825157 - 19825117
Alignment:
Q  477 caatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  19825157 caatttggttgtttggcgagtcgagtgctcacaatttggtt 19825117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 15630107 - 15630044
Alignment:
Q  300 ttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggtt 363  Q
    ||||||||||| |   ||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 655
Target Start/End: Original strand, 11993300 - 11993386
Alignment:
Q  569 tctttggttgtttttctctcgattggttcttctatatggttgcttctccctaccaatttttgt-ttggtttagtttgaaatggttctt 655  Q
    ||||||||||||| |||||| |||||||| | | ||||||||||||||| ||   ||| |||| |||||||||||||| |||||||||    
T  11993300 tctttggttgtttatctctctattggttcatttgtatggttgcttctccata-tgattcttgtgttggtttagtttgagatggttctt 11993386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 15630108 - 15630044
Alignment:
Q  268 tttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 332  Q
    |||||||| ||||||  ||||||||||||| |||||||||||| |   ||||||||| |||||||    
T  15630108 tttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 485 - 517
Target Start/End: Complemental strand, 15630107 - 15630075
Alignment:
Q  485 ttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||||||||||||||||||||| |||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggtt 15630075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 438 - 517
Target Start/End: Original strand, 20242015 - 20242093
Alignment:
Q  438 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  20242015 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 20242093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 438 - 517
Target Start/End: Complemental strand, 20251052 - 20250974
Alignment:
Q  438 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 517  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  20251052 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 20250974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 509
Target Start/End: Original strand, 20242107 - 20242177
Alignment:
Q  438 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 509  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  20242107 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttggtgagtagagttctcaca 20242177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 20241964 - 20242052
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 413  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20241964 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20242052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 326 - 413
Target Start/End: Complemental strand, 20251103 - 20251015
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 413  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20251103 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20251015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 183 - 310
Target Start/End: Original strand, 20241882 - 20242010
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 280  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  20241882 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 20241980  T
Q  281 tcaggtgctcacactttagttgtttggtga 310  Q
    ||  || |||||| ||| ||||||||||||    
T  20241981 tcgagttctcacattttggttgtttggtga 20242010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 20242056 - 20242144
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 413  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20242056 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20242144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 326 - 413
Target Start/End: Complemental strand, 20251011 - 20250923
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 413  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20251011 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20250923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 20251185 - 20251057
Alignment:
Q  183 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 280  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  20251185 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 20251087  T
Q  281 tcaggtgctcacactttagttgtttggtga 310  Q
    ||  || |||||| ||| ||||||||||||    
T  20251086 tcgagttctcacattttggttgtttggtga 20251057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 20242177 - 20242238
Alignment:
Q  479 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  20242177 atttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattcttc 20242238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 20242148 - 20242237
Alignment:
Q  326 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 413  Q
    ||||||||||||||||||  |||||||||| ||||||||| ||||||||   ||||||||||||||||   ||||||||||||||||||||    
T  20242148 tttggttgtttggtgagtagagttctcaca-tttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattctt 20242237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 20242199 - 20242247
Alignment:
Q  438 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 486  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20242199 gtgctcacaatttggtttcttctcccccttttgattcttcaatttggtt 20242247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 540
Target Start/End: Original strand, 20241995 - 20242053
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20241995 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20242053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 540
Target Start/End: Original strand, 20242087 - 20242145
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20242087 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20242145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 540
Target Start/End: Complemental strand, 20250980 - 20250922
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20250980 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20250922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 540
Target Start/End: Complemental strand, 20251072 - 20251014
Alignment:
Q  480 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 540  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20251072 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20251014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 20250960 - 20250913
Alignment:
Q  438 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 486  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  20250960 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtt 20250913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 424
Target Start/End: Original strand, 20242331 - 20242361
Alignment:
Q  394 ttctcccccttttgattcttttgattgattg 424  Q
    |||||||||||||||||||||||||||||||    
T  20242331 ttctcccccttttgattcttttgattgattg 20242361  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 424
Target Start/End: Complemental strand, 20250829 - 20250799
Alignment:
Q  394 ttctcccccttttgattcttttgattgattg 424  Q
    |||||||||||||||||||||||||||||||    
T  20250829 ttctcccccttttgattcttttgattgattg 20250799  T

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Target: scaffold0499 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 7329 - 7233
Alignment:
Q  238 ttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttg 337  Q
    |||||||||| ||| |||||||| || ||| ||||||| |||| ||  |||||||| |||||||   |||||| | ||||||||||| ||||||||||||    
T  7329 ttgtttggtgagtcgagtgctcacaaattgattgtttgttgagacaaatgctcacaatttagtt---tggtgagtcaggtgctcacaatttggttgtttg 7233  T

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Target: scaffold0499; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 510
Target Start/End: Complemental strand, 7333 - 7304
Alignment:
Q  481 ttggttgtttggtgagtcgagtgctcacaa 510  Q
    ||||||||||||||||||||||||||||||    
T  7333 ttggttgtttggtgagtcgagtgctcacaa 7304  T

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