View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_42 (Length: 241)
Name: NF4667_low_42
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 30774348 - 30774545
Alignment:
| Q |
28 |
tttttgagatgatagctttaaagcaacatccttattctttagagcatttctcaacttgtaaatgcggcgatctaatccattcattaccatacacttcctt |
127 |
Q |
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|||||||||||||||||||||| || |||||| |||||||| |||| |||||||||||||||| || ||||||| |||||||||||||| |||||||| |
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| T |
30774348 |
tttttgagatgatagctttaaatttacgtccttaatctttagaccattcctcaacttgtaaatgcagcaatctaatgcattcattaccatagacttcctt |
30774447 |
T |
|
| Q |
128 |
aggaattttgcatcttcagcatggtactctctagcttcttgaatcaattttttaatttcttctctggataacctttctttgtcgttggttatcatgat |
225 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30774448 |
aggaatttctcatcttcagcacggtactctctagcttcttgaatcattttgttaatttcttctctggataacctttctttgtcgttggttatcgtgat |
30774545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8615784 - 8616003
Alignment:
| Q |
1 |
agtaattgcattgttgatattttcaactttttgagatgatagctttaaagcaacatccttattctttagagcatttctcaacttgtaaatgcggcgatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| |
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| T |
8615784 |
agtaattgcattgttgatattttcaactttttgagatgatagctttaaagcaacatccttattctttagagcattcctcaacttgtaaatgcagtcatct |
8615883 |
T |
|
| Q |
101 |
aatccattcattaccatacacttccttaggaattttgcatcttcagcatggtact-ctctagcttcttgaatcaattttttaatttcttctctggataac |
199 |
Q |
| |
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||| ||||||||||| | |||||||||||||||| |||||||||| |||||| |||| ||||||||||||| |||||||||||| || |||||| |
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| T |
8615884 |
aattcattcattaccttggccttccttaggaatttttcatcttcagcgcggtactcctct-gcttcttgaatcagttttttaatttcatcagccgataac |
8615982 |
T |
|
| Q |
200 |
ctttctttgtcgttggttatc |
220 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
8615983 |
ctttctttgtcattggttatc |
8616003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 8674550 - 8674491
Alignment:
| Q |
160 |
agcttcttgaatcaattttttaatttcttctctggataacctttctttgtcgttggttat |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | || ||||||||||||| ||| ||||| |
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| T |
8674550 |
agcttcttgaatcaatttgttaatttcttctattgacaacctttctttgttgtttgttat |
8674491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 27849094 - 27849045
Alignment:
| Q |
160 |
agcttcttgaatcaattttttaatttcttctctggataacctttctttgt |
209 |
Q |
| |
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||||||||||||||| ||||||||||||||| | |||| ||||||||||| |
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| T |
27849094 |
agcttcttgaatcaactttttaatttcttctgttgatagcctttctttgt |
27849045 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 16663042 - 16662870
Alignment:
| Q |
53 |
acatccttattctttagagcatttctcaacttgtaaatgcggcgatctaatccattcattaccatacacttccttaggaattttgcatcttcagcatggt |
152 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||||||| | ||||||| ||||||||||| | ||||||||||||||| ||||||||||||||| |
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| T |
16663042 |
acattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggt |
16662943 |
T |
|
| Q |
153 |
actctctagcttcttgaatcaattttttaatttcttctctggataacctttctttgtcgttggttatcatgat |
225 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||| |
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| T |
16662942 |
actccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggttatcgtgat |
16662870 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 15594159 - 15594325
Alignment:
| Q |
53 |
acatccttattctttagagcatttctcaacttgtaaatgcggcgatctaatccattcattaccatacacttccttaggaattttgcatcttcagcatggt |
152 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | | ||||||| ||||||||||| ||||||||||||||| ||||||||||| | | |
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| T |
15594159 |
acatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgat |
15594258 |
T |
|
| Q |
153 |
actctctagcttcttgaatcaattttttaatttcttctctggataacctttctttgtcgttggttat |
219 |
Q |
| |
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| || ||||||||||||| |||||||||||| | | || |||||||||||||| |||||||| |
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| T |
15594259 |
attcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggttat |
15594325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 28219041 - 28219097
Alignment:
| Q |
55 |
atccttattctttagagcatttctcaacttgtaaatgcggcgatctaatccattcat |
111 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || | ||||||| ||||||| |
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| T |
28219041 |
atccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcat |
28219097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 43743915 - 43743973
Alignment:
| Q |
31 |
ttgagatgatagctttaaagcaacatccttattctttagagcatttctcaacttgtaaa |
89 |
Q |
| |
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|||||| || |||||||| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
43743915 |
ttgagaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaa |
43743973 |
T |
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