View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_44 (Length: 238)
Name: NF4667_low_44
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8719506 - 8719285
Alignment:
| Q |
1 |
ttcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggttagcacatagcatttcaaactttctagattaattcatc |
100 |
Q |
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| T |
8719506 |
ttcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggttagcacatagcatttcaaactttctagattaattcatc |
8719407 |
T |
|
| Q |
101 |
atgtgattcattatttacaagaatcttaatcaattacaggtgtagtacctttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatg |
200 |
Q |
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| T |
8719406 |
atgtgattcattatttacaagaatcttaatcaattacaggtgtagtacctttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatg |
8719307 |
T |
|
| Q |
201 |
ccctcaccaagtcagaaatctg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
8719306 |
ccctcaccaagtcagaaatctg |
8719285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8673213 - 8672988
Alignment:
| Q |
1 |
ttcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggttagcacatagcatttcaaactttctagattaatt---- |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673213 |
ttcatgaccaatgtttttatttgacttttgagcataagaagaagctggatgaagagtttggttagcacatagcatttcaaactttctagattaattaaat |
8673114 |
T |
|
| Q |
97 |
catcatgtgattcattatttacaagaatcttaatcaattacaggtgtagtacctttgacttttgagcagaaacttggtgaagcagtatttatacctgctg |
196 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
8673113 |
catcatgtgactagttatttacaagaatcttaatcaattacaggtgtagtaccttggacttttgagcagaagcttggtgaagcactatttatacctgctg |
8673014 |
T |
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| Q |
197 |
gatgccctcaccaagtcagaaatctg |
222 |
Q |
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| T |
8673013 |
gatgccctcaccaagttcgaaatctg |
8672988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8591670 - 8591448
Alignment:
| Q |
1 |
ttcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggttagcacatagcatttcaaactttctagattaattcatc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| |||| |
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| T |
8591670 |
ttcatgaccaatgtttttatttgacttttgaccataagaagaagctggagaaagaatttggttagcacgtagcatttcaaactttctagcttaatgcatc |
8591571 |
T |
|
| Q |
101 |
atgtgattcattatttacaagaatctt-aatcaattacaggtgtagtacctttgacttttgagcagaaacttggtgaagcagtatttatacctgctggat |
199 |
Q |
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|| ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8591570 |
atacaattagttatttacatgaatctttaatcaattacaggtgtagtacctttgacttttgagcagaaacttggtgaagcagtatttatacttgctggat |
8591471 |
T |
|
| Q |
200 |
gccctcaccaagtcagaaatctg |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
8591470 |
gccctcaccaagtcagaaatctg |
8591448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23439681 - 23439903
Alignment:
| Q |
1 |
ttcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggttagcacatagcatttcaaactttctagattaatt---- |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23439681 |
ttcatgaccaatgtttttatttgacttttgagcataagaag---ctgaaggaagagtttggttagcacatagcatttcaaactttctatattaattaaat |
23439777 |
T |
|
| Q |
97 |
catcatgtgattcattatttacaagaatcttaatcaattacaggtgtagtacctttgacttttgagcagaaacttggtgaagcagtatttatacctgctg |
196 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23439778 |
catcatgtgactagttatttacaagaatcttaatcaattacaggtgtagttccttggacttttgagcagaagcttggtgaagcagtatttatacctgctg |
23439877 |
T |
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| Q |
197 |
gatgccctcaccaagtcagaaatctg |
222 |
Q |
| |
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|||||||||||||||| |||||||| |
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| T |
23439878 |
gatgccctcaccaagttcgaaatctg |
23439903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 55410164 - 55410096
Alignment:
| Q |
153 |
gacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatct |
221 |
Q |
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| T |
55410164 |
gacttttgagcaaaaacttggggaggcagtatttattcctgctggatgcccacatcaagtcaggaatct |
55410096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 55410315 - 55410251
Alignment:
| Q |
1 |
ttcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggttag |
65 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| ||| || |||| |||||||||||| |
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| T |
55410315 |
ttcatgaccaatgtttttatttgactttggagcacaagaataagttgaaggaggagtttggttag |
55410251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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