View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_46 (Length: 237)
Name: NF4667_low_46
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 40635352 - 40635527
Alignment:
| Q |
40 |
acaatctacaccgccttttatatccagcaaaactataatttattttgttaggaccttcaaataaacatataaagaaatatactactatgtcaaaaactac |
139 |
Q |
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| T |
40635352 |
acaatttacaccgccttttatatccagcaaaactataatttattttgttaggaccttcaaataaacatataaagaaatata------tgtcaaaaactac |
40635445 |
T |
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| Q |
140 |
aaagttgggattggcatagaacctctcatgccctaccattaaacatgatgatatttgtacaagcttaatccttacacatttt |
221 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635446 |
aaagttgggattggcatagaacctctcatgccctgccattaaacatgatgatatttgtacaagcttaatccttacacatttt |
40635527 |
T |
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