View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667_low_49 (Length: 235)

Name: NF4667_low_49
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667_low_49
NF4667_low_49
[»] chr8 (2 HSPs)
chr8 (1-221)||(4903303-4903525)
chr8 (95-202)||(1556798-1556905)
[»] chr7 (2 HSPs)
chr7 (3-221)||(22154013-22154233)
chr7 (3-221)||(22209928-22210148)
[»] chr4 (2 HSPs)
chr4 (89-154)||(34821782-34821847)
chr4 (24-155)||(53561813-53561944)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4903525 - 4903303
Alignment:
Q  1 agtaaaaaccaccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtt 98  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  4903525 agtaaaaaccaccactttcgacggtgccgggctcttccaaatatgcgagaaaaccttcctcgggagaccatcaagatcttcctcccttatcatcaatgtt 4903426  T
Q  99 tccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4903425 tccaatttagaatacattgattttaccgaaaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaat 4903326  T
Q  199 cctcgagcaaatcatgaagaagt 221  Q
    |||||||||||||||||||||||    
T  4903325 cctcgagcaaatcatgaagaagt 4903303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 1556905 - 1556798
Alignment:
Q  95 tgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattc 194  Q
    |||||||||||| |||||||||||||| ||||| ||||| || ||||| |||||||||||  |||||| |||| |||| ||  | ||  |||| ||||||    
T  1556905 tgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctccacttccaatgatcctcctcttccacaaaaccaaaaccattc 1556806  T
Q  195 aaatcctc 202  Q
    ||||||||    
T  1556805 aaatcctc 1556798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 22154013 - 22154233
Alignment:
Q  3 taaaaaccaccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttc 100  Q
    ||||||||| ||||| ||||||  |||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  22154013 taaaaaccatcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttc 22154112  T
Q  101 caatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcc 200  Q
    |||||||||||| ||| ||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  22154113 caatttagaataaatttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattcaaatct 22154212  T
Q  201 tcgagcaaatcatgaagaagt 221  Q
    || | |||||| |||||||||    
T  22154213 tctaacaaatcgtgaagaagt 22154233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 22209928 - 22210148
Alignment:
Q  3 taaaaaccaccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttc 100  Q
    ||||||||| ||||| ||||||  |||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  22209928 taaaaaccatcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttc 22210027  T
Q  101 caatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcc 200  Q
    |||||||||||| ||| ||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  22210028 caatttagaataaatttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattcaaatct 22210127  T
Q  201 tcgagcaaatcatgaagaagt 221  Q
    || | |||||| |||||||||    
T  22210128 tctaacaaatcgtgaagaagt 22210148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 34821782 - 34821847
Alignment:
Q  89 catcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctcca 154  Q
    |||||||||||||||| ||||||||||||||||||||||||| || || ||||| |||||||||||    
T  34821782 catcaatgtttccaatctagaatacattgattttaccgaaaaggccccatcctcctccaacctcca 34821847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 53561944 - 53561813
Alignment:
Q  24 gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgatttta 123  Q
    ||||| |||||||||||||||   || |||||||||   ||  ||||||| |  || ||||| | |||||||||||||||||| |||||||| ||||| |    
T  53561944 gccggactcttccaaatatgcttaaacaccctcctctctagttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaa 53561845  T
Q  124 ccgaaaaagcaccttcctcttccaacctccaa 155  Q
    ||||||||| ||| ||||||||||| ||||||    
T  53561844 ccgaaaaagtaccgtcctcttccaaactccaa 53561813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University