View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_6 (Length: 630)
Name: NF4667_low_6
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Original strand, 43111631 - 43112260
Alignment:
| Q |
1 |
tcatcagaaatgaccccagtctgcagaaaaacaaagggcaagactaaatgttaaggaattatacatatacctaatactaataaataatgaagagtttcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43111631 |
tcatcagaaatgaccccagtctgcagaaaaacaaagggcaagactaaatgttaaggaattatacatatacctaatactaataaataatgaagagtttcca |
43111730 |
T |
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| Q |
101 |
tgatatatatgcacagaacaacgcataaacttacaagttcatagactaaggaaattgtgannnnnnnaccgagcaaacttagctgatcaagcatcatttc |
200 |
Q |
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| T |
43111731 |
tgatatatatgcacagaacaacgcataaacttacaagttcgtagactaaggaaattgtgatttttttaccaagcaaacttagctgatcaagcatcatttc |
43111830 |
T |
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| Q |
201 |
tgcgtccctaagagaaccacatgatttagcagcaatgaaatccaaagcatcttgttcggactcaagaccttcttcaacgcaaattcttctgagtctgcta |
300 |
Q |
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| T |
43111831 |
tgcgtccctaagagaaccacatgatttagcagcaatgaaatccaaagcatcttgttcggactcaagaccttcttcaacgcaaattcttttgagtctgcta |
43111930 |
T |
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| Q |
301 |
gcaatgtcagcatctttaacctttgtaaagtgatacctttgagctcgagaaaccgcacttcttggtagcttctccaaatcaggagtgatcatcacaaaga |
400 |
Q |
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| T |
43111931 |
gcaatgtcagcatctttaatctttgtaaagtgatacctttgagctcgagaaatcgcacttcttggtagcttctccaaatcaggagtgatcatcacaaaga |
43112030 |
T |
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| Q |
401 |
ccacatgttgagaaaaaccccctaggctattcagaagagtagcccatgtttccttattcaataactggcactcatcaataatgaacaccttataacgtga |
500 |
Q |
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| T |
43112031 |
ccacatgttgagaaaaaacccctaggctattcagaagagtagcccatgtttccttattcaataactggcactcatcaataatgaacaccttataacgtga |
43112130 |
T |
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| Q |
501 |
tgaaaaaggagctgttgtgcaagcattcttaacaagggatttagccttgtccggacgatttatcctcaaagagtcgacttccttaacatctttacttctt |
600 |
Q |
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| T |
43112131 |
tgaaaaaggagctgttgtgcaagcattcttaacaagggatttagccttgtccggacgatttatcctcaaagagtcgacttccttaacatctttacttctt |
43112230 |
T |
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| Q |
601 |
ccagaaaagaacaaaacacattcactacac |
630 |
Q |
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| T |
43112231 |
ccagaaaagaacaaaacacattcactacac |
43112260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 129 - 630
Target Start/End: Original strand, 34259595 - 34260093
Alignment:
| Q |
129 |
acttacaagttcatagactaaggaaattgtgannnnnnnaccgagcaaacttagctgatcaagcatcatttctgcgtccctaagagaaccacatgattta |
228 |
Q |
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| T |
34259595 |
acttacaagctcataaactaaggaaattttgatctttttaccaagcaaactgagttgatcaagcataatttctgcatccctgacagaaccacaggatctt |
34259694 |
T |
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| Q |
229 |
gcagcaatgaaatccaaagcatcttgttcggactcaagaccttcttcaacgcaaattcttctgagtctgctagcaatgtcagcatctttaacctttgtaa |
328 |
Q |
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| T |
34259695 |
gcagcaataaggtctaaagcagcctgttcaaaatcaagaccttcttctgtacaaattttttctaatttgcaagcaatgttagcatcttgaaccttcggaa |
34259794 |
T |
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| Q |
329 |
agtgatacctttgagctcgagaaaccgcacttcttggtagcttctccaaatcaggagtgatcatcacaaagaccacatgttgagaaaaaccccctaggct |
428 |
Q |
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| T |
34259795 |
agtaatacttctgagcccgggaaactgcactttgtggaagcttatccaaatctgtagttatcatcacaaaaactgcatgttgagaaatgttatcttggtt |
34259894 |
T |
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| Q |
429 |
attcagaagagtagcccatgtttccttattcaataactggcactcatcaataatgaacaccttataacgtgatgaaaaaggagctgttgtgcaagcattc |
528 |
Q |
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||| ||| |||||||| || ||||||||||||||||| ||||||||||| |||||| |||| || |||| ||||| ||| || |||||| |
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| T |
34259895 |
atttgaaaggcacgcccatgtctcggggttcaataactggcactcgtcaataatgaaaaccttaaaacgagaggaaacaggaggtgta---cacgcattc |
34259991 |
T |
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| Q |
529 |
ttaacaagggatttagccttgtccggacgatttatcctcaaagagtcgacttccttaacatctttacttcttccagaaaagaacaaaacacattcactac |
628 |
Q |
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||||||||||||||| ||| ||| | |||| || |||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
34259992 |
ttaacaagggatttaacctggtctgtgtgattgattctcacagaatccacttccttaacatctttacttcttccagaaaagaataaaacacattctctac |
34260091 |
T |
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