View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4667_low_7 (Length: 496)
Name: NF4667_low_7
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 9 - 476
Target Start/End: Complemental strand, 4441286 - 4440817
Alignment:
| Q |
9 |
ttggttacattcaattgcttacatatttgcaaagtattatcaaggttgacagggcgtgtgtaagtgtttcatagatttaggagattaattgctccttaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4441286 |
ttggttacattcaattgcttacatatttgcaaagtattatcaaggttgacagggcgtgtgtaagtgtttcatagatttaggagattaattgctccttaaa |
4441187 |
T |
|
| Q |
109 |
aatattcagatatttgcgatggatatcaatgaagaagtatccactgaagtcctaacctttgctacgacagaacctctgctctccacatatctacaactac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4441186 |
aatattcagatatttgcgatggatatcaatgaagaagtatccactgaagtcctaacctttgctacgacagaacctctgctctccacatatctacaactac |
4441087 |
T |
|
| Q |
209 |
agtttttctctgattcgatggtgttgactatacaaagaaatcacggagtgatttttagcacgctctgatttcatctaaccaagattctatgattgatttt |
308 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4441086 |
agtttttctctgcttcgatggtgttgactatacaaagaaatcacggagtgatttttagcaagctctgatttcatctaaccaagattctatgattgatttt |
4440987 |
T |
|
| Q |
309 |
caggtagccctatgtc--atgcaccgtgtcagcatttgcttaactagattgggaaatacatcacatatgtttgcaaaattttctaagcgcacaccaattg |
406 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4440986 |
caggtagccctatgtcatatgcaccgtgtcagcatttgcttaactagattggaaaatacatcacatatgtttacaaaattttctaagcgcacaccaattg |
4440887 |
T |
|
| Q |
407 |
aaatttgaacattttgtcgagctatctaaaacacatgagaccttaagctctacagttagcatatacaaaa |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4440886 |
aaatttgaacattttgtcgagctatctaaaacacatgagaccttaagctctacagttagcatatacaaaa |
4440817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University