View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667_low_8 (Length: 440)
Name: NF4667_low_8
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 145 - 430
Target Start/End: Original strand, 28672824 - 28673109
Alignment:
| Q |
145 |
gttgcaatctaaaatccaagattgtgaataaacaaacatccaagattgcatgcaatttgttcataactcacaacctgttggttgaaagtgcagaaaatcc |
244 |
Q |
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| T |
28672824 |
gttgcaagctaaaatccaagattgtgaataaacaaacatccaagattgcatgcaatttgttcataactcacaacctgttggttgaaagtgcagaaaatcc |
28672923 |
T |
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| Q |
245 |
aatgccgtttgtaaaacgatgtgccaagaactctttcaaataagtttatctttattttgttagattttatttagataacagttctttgatttgacaaatc |
344 |
Q |
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| T |
28672924 |
aatgccgtttgtaaaacgatgtgccaagaactctttcaaagaagtgtctctatatattggtagattttctttagataacagttccttgattggaccaatc |
28673023 |
T |
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| Q |
345 |
attttttgcattccctcggtttcatgtgctctaaaaagtttttcgattgaaattcttgggccatcattttttgctcaaactctgtg |
430 |
Q |
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| T |
28673024 |
acttttggcattccctcggattcatgtgctctaaaaagggatgcgattgaaattcttgggccagcatgttttgctaaaactctgtg |
28673109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 28672637 - 28672769
Alignment:
| Q |
7 |
gtgcggcccaggatgcccaccagattcgaccttgtaatccaacctcgcccatgatagtgtctaatgcataaacctttacggaaaattgaccagcacccat |
106 |
Q |
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| T |
28672637 |
gtgcggcccaggatgcccaccagattcgaccctgtaatccaacctcgcccatgatagtgtctaatgcataaacctttacggaaaattgaccagcacccat |
28672736 |
T |
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| Q |
107 |
gagaccgagaccatggttgtcaattatggaaga |
139 |
Q |
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| T |
28672737 |
gagaccgagaccatggttgtcaattatggaaga |
28672769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 28669837 - 28669930
Alignment:
| Q |
231 |
agtgcagaaaatccaatgccgtttgtaaaacgatgtgccaagaactctttcaaataagtttatctttattttgttagattttatttagataaca |
324 |
Q |
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| T |
28669837 |
agtgcagaagctccaaggccatttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtggattttctttagataaca |
28669930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 28638945 - 28638977
Alignment:
| Q |
186 |
aagattgcatgcaatttgttcataactcacaac |
218 |
Q |
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| T |
28638945 |
aagattgcatgcaatttgttcataagtcacaac |
28638977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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