View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4668-Insertion-3 (Length: 265)
Name: NF4668-Insertion-3
Description: NF4668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4668-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 23883102 - 23882852
Alignment:
| Q |
15 |
gcccaaaaaacagtccaatttcgggtcttcccctcactcaacaccatatccatactcatatccaaccattgctgcaaatccgcgttgaaaagttccttgt |
114 |
Q |
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| T |
23883102 |
gcccaaaaaccagtccaatttcgggtcttcccctcactcaacactatatccatactcatatccaaccattgctgcaaatctgcgttgaaaagttccttgt |
23883003 |
T |
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| Q |
115 |
gatatctaaaattaacagtcctaagcaaacaaccattgctatgggacaatcgcgaagaacgtgcaatatcttttcgatagtatctattcagtgatgacag |
214 |
Q |
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| T |
23883002 |
gatatctaaaattaacagtcctaagcaaacaaccattgctatgggataatcgcgaagaacatgcaatatcctttcgatagtatctattaagtgatgacag |
23882903 |
T |
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| Q |
215 |
tacgcagttctgagatgcatgtcctgcaaactgctattagttaaccgtcca |
265 |
Q |
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| T |
23882902 |
tacgcagttctgagatgcatgtcctgcaaactgctattagttaaccgtcca |
23882852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 47 - 263
Target Start/End: Original strand, 23420228 - 23420437
Alignment:
| Q |
47 |
ctcactcaacaccatatccatactcatatccaaccattgctgcaaatccgcgttgaaaagttccttgtgatatctaaaattaacagtcctaagcaaacaa |
146 |
Q |
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| T |
23420228 |
ctcactcaacgccgtatccatactcatctccaaccattgctgcaaatctgcgttgaaaagttccttatgatatctagaattaacggtcttaagcaaacaa |
23420327 |
T |
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| Q |
147 |
ccattgctatgggacaatcgcgaagaacgtgcaatatcttttcgatagtatctattcagtgatgacagtacgcagttctgagatgcatgtcctgcaaact |
246 |
Q |
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| T |
23420328 |
ccattgatatgggacaatcgcgaagaacatgcaatgtcgtttcgatagtatctattcagt-------gtatgcagttctgagatgcatgacttgcaatct |
23420420 |
T |
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| Q |
247 |
gctattagttaaccgtc |
263 |
Q |
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| T |
23420421 |
gctattacttaaccgtc |
23420437 |
T |
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