View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4668_high_1 (Length: 562)

Name: NF4668_high_1
Description: NF4668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4668_high_1
NF4668_high_1
[»] chr8 (8 HSPs)
chr8 (20-383)||(32550841-32551204)
chr8 (375-552)||(32551697-32551874)
chr8 (259-330)||(33802345-33802416)
chr8 (259-330)||(38686308-38686379)
chr8 (259-330)||(33801504-33801575)
chr8 (259-330)||(38687027-38687098)
chr8 (269-305)||(36936400-36936436)
chr8 (269-305)||(36936679-36936715)
[»] chr1 (7 HSPs)
chr1 (338-546)||(45581521-45581728)
chr1 (269-330)||(38618235-38618296)
chr1 (287-330)||(50354996-50355039)
chr1 (287-330)||(24976719-24976762)
chr1 (287-330)||(29334947-29334990)
chr1 (269-308)||(37422422-37422461)
chr1 (259-305)||(14925314-14925360)
[»] chr4 (5 HSPs)
chr4 (259-329)||(53664218-53664288)
chr4 (259-330)||(50710389-50710460)
chr4 (259-330)||(53665058-53665129)
chr4 (283-330)||(20681727-20681774)
chr4 (269-297)||(6680324-6680352)
[»] chr2 (9 HSPs)
chr2 (259-330)||(8536858-8536929)
chr2 (259-317)||(8536155-8536213)
chr2 (287-330)||(6851917-6851960)
chr2 (288-330)||(26893487-26893529)
chr2 (288-330)||(26898926-26898968)
chr2 (283-330)||(6852805-6852852)
chr2 (269-330)||(26487827-26487888)
chr2 (269-308)||(19521368-19521407)
chr2 (266-305)||(42370929-42370968)
[»] chr7 (6 HSPs)
chr7 (287-330)||(34852562-34852605)
chr7 (269-305)||(12732277-12732313)
chr7 (287-330)||(30916496-30916539)
chr7 (259-297)||(46757462-46757500)
chr7 (287-329)||(46814247-46814289)
chr7 (287-331)||(5004192-5004236)
[»] chr5 (4 HSPs)
chr5 (269-336)||(7495239-7495306)
chr5 (286-330)||(43589161-43589205)
chr5 (287-330)||(18153434-18153477)
chr5 (287-330)||(42993200-42993243)
[»] chr3 (2 HSPs)
chr3 (287-330)||(35432221-35432264)
chr3 (259-305)||(52399000-52399046)
[»] scaffold0189 (1 HSPs)
scaffold0189 (259-305)||(12831-12877)


Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 383
Target Start/End: Original strand, 32550841 - 32551204
Alignment:
Q  20 gacatatgtgaagatttgaattggtagagaacgacgtcgttcagttcgatggagaacgcgactctcaactcagattaaagaaggtaaagcttgtcttttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32550841 gacatatgtgaagatttgaattggtagagaacgacgtcgttcagttcaatggagaacgcgactctcaactcagattaaagaaggtaaagcttgtcttttt 32550940  T
Q  120 tgggatcacttctctctgaactctcgtgctgcctccttcacaacaaaaacgtggtacaaacagaaatactactctttgcaaaaagagaaattctcatgca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32550941 tgggatcacttctctctgaactctcgtgctgcctccttcacaacaaaaacgtggtacaaacagaaatactactctttgcaaaaagagaaattctcataca 32551040  T
Q  220 ttaatgtggtatataaatatttgggttaacagaaatacatctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacc 319  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32551041 ttaatgtggtatatatatatttgggttaacagaaatacatctctagtttatctaatggtcaatatttactttcctatgatgggaaagaattccttctacc 32551140  T
Q  320 caccctaaatgttaccattgttccaaacctttccactcattttctccatatttagatacttctt 383  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32551141 caccctaaatgtcatcattgttccaaacctttccactcattttctccatatttagatacttctt 32551204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 375 - 552
Target Start/End: Original strand, 32551697 - 32551874
Alignment:
Q  375 atacttcttatctctttgcaattccttttgaatcatcaactaaattatttttgtaattagagatcatcattatttcttcctcattttatggtttcgatag 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32551697 atacttcttatctctttgcaattccttttgaatcatcaactaaattatttttgtaattagagatcatcattatttcttcctcattttatggtttcgatgg 32551796  T
Q  475 tcactcaactttatagataatgtttttctctacctatataatttatattctattcataagtttgctcttcatctcact 552  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  32551797 tcactcaactttatagataaagtttttctctacctctataatttatattctattcataagtttgctcttcatttcact 32551874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 33802345 - 33802416
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33802345 tctctattttatttaatggtcaatatttactttcccatggtgggaaagaattccttctacccaccctaaatg 33802416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 38686379 - 38686308
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  38686379 tctctactttatctaatggtcaatatttactttcccatggtggaaaagaattccttctacccaccctaaatg 38686308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 33801575 - 33801504
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  33801575 tctctactttatttaatggtcaatatttacttttccatggtgggaaagaattccttctacccaccctaaatg 33801504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 38687027 - 38687098
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||| ||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  38687027 tctctactttatctaatgatcaatatttactttcccattgtgggaaagaattccttctacccaccctaaatg 38687098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 36936400 - 36936436
Alignment:
Q  269 atctaatggtcaatatttactttcccatgatgggaaa 305  Q
    |||||||||| || |||||||||||||||||||||||    
T  36936400 atctaatggttaaaatttactttcccatgatgggaaa 36936436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 36936679 - 36936715
Alignment:
Q  269 atctaatggtcaatatttactttcccatgatgggaaa 305  Q
    |||||||||| || |||||||||||||||||||||||    
T  36936679 atctaatggttaaaatttactttcccatgatgggaaa 36936715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 338 - 546
Target Start/End: Original strand, 45581521 - 45581728
Alignment:
Q  338 tgttccaaacctttccactcattttctccatatttagatacttcttatctctttgcaattccttttgaatcatcaactaaattatttttgtaattagaga 437  Q
    |||||||||| ||||| ||| ||||||||| |||| ||| |   |||||||||||||| |||||  |||||||||||||| |||  | ||||||||||||    
T  45581521 tgttccaaacttttcctctccttttctccaaattttgatgcccattatctctttgcaaatccttcagaatcatcaactaagttacgtctgtaattagaga 45581620  T
Q  438 tcatcattatttcttcctcattttatggtttcgatagtcactcaactttatagataatgtttttctctacctatataatttatattctattcataa-gtt 536  Q
    | | |||||||||||| |||||||||| |||| ||| |||||||||||||||||||| | |||||||||||  ||||||||||| ||||||||||| | |    
T  45581621 tgaacattatttcttcttcattttatgatttcaataatcactcaactttatagataaaggttttctctacc--tataatttataatctattcataatggt 45581718  T
Q  537 tgctcttcat 546  Q
    ||||||||||    
T  45581719 tgctcttcat 45581728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 38618296 - 38618235
Alignment:
Q  269 atctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||||||||||  || ||||||||||| ||||||||||||||| ||||||||||||||||    
T  38618296 atctaatggtcaaacttaactttcccatggtgggaaagaattcctcctacccaccctaaatg 38618235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 50354996 - 50355039
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||    
T  50354996 actttcccatggtgggaaagaattcctcctacccaccctaaatg 50355039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 24976719 - 24976762
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  24976719 actttcccatggtggaaaagaattcctcctacccaccctaaatg 24976762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 29334947 - 29334990
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||    
T  29334947 actttcccatggtgggaaataattcctcctacccaccctaaatg 29334990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 37422461 - 37422422
Alignment:
Q  269 atctaatggtcaatatttactttcccatgatgggaaagaa 308  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  37422461 atctaatgataaatatttactttcccatgatgggaaagaa 37422422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 14925314 - 14925360
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaa 305  Q
    ||||||||||||||||||||||| |||  |||||||||| |||||||    
T  14925314 tctctagtttatctaatggtcaaaattagctttcccatggtgggaaa 14925360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 53664288 - 53664218
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaat 329  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53664288 tctctattttatctaatggtcaatatttactttcccatggtgggaaagaattccttctacccaccctaaat 53664218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 50710389 - 50710460
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  50710389 tctctactttatctaatggtcaatatttactttcccatggtgggaaagaattccttctacccaccttaaatg 50710460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 53665058 - 53665129
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||| ||||| ||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||    
T  53665058 tctctactttatttaatggtcaatatttacttttttatggtgggaaagaattccttctacccaccctaaatg 53665129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 20681774 - 20681727
Alignment:
Q  283 atttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  20681774 atttactttcccatagtgggaaagaattcctcctacccaccctaaatg 20681727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 6680324 - 6680352
Alignment:
Q  269 atctaatggtcaatatttactttcccatg 297  Q
    |||||||||||||||||||||||||||||    
T  6680324 atctaatggtcaatatttactttcccatg 6680352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 8536858 - 8536929
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||| |||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  8536858 tctctactttatctaatggtcaacatttacttttccatggtaggaaagaattccttctacccaccctaaatg 8536929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 8536213 - 8536155
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttcta 317  Q
    |||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  8536213 tctctactttatctaatcgtcaatatttactttcccatggtggaaaagaattccttcta 8536155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 6851960 - 6851917
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  6851960 actttcccatgatgggaaagaattcctcctacccaccctaaatg 6851917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 26893529 - 26893487
Alignment:
Q  288 ctttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  26893529 ctttcccatggtgggaaagaattccttctacccaccctaaatg 26893487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 26898968 - 26898926
Alignment:
Q  288 ctttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  26898968 ctttcccatggtgggaaagaattccttctacccaccctaaatg 26898926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 6852805 - 6852852
Alignment:
Q  283 atttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  6852805 atttactttcctatggtgggaaagaattcctcctacccaccctaaatg 6852852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 26487827 - 26487888
Alignment:
Q  269 atctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||||||||||  || |||||| |||| | ||||||||||||| ||||||||||||||||    
T  26487827 atctaatggtcaagcttaactttctcatggtaggaaagaattcctcctacccaccctaaatg 26487888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 19521407 - 19521368
Alignment:
Q  269 atctaatggtcaatatttactttcccatgatgggaaagaa 308  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  19521407 atctaatggttaagatttactttcccatgatgggaaagaa 19521368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 42370929 - 42370968
Alignment:
Q  266 tttatctaatggtcaatatttactttcccatgatgggaaa 305  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  42370929 tttatctaatggccaatatttactttcccatggtgggaaa 42370968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 34852605 - 34852562
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||    
T  34852605 actttcccatggtggaaaagaattccttctacccaccctaaatg 34852562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 12732313 - 12732277
Alignment:
Q  269 atctaatggtcaatatttactttcccatgatgggaaa 305  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12732313 atctaatggtcaatatttactttcccatggtgggaaa 12732277  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 30916496 - 30916539
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||    
T  30916496 acttttccatgatgggaaagaattcttcctacccaccctaaatg 30916539  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 46757500 - 46757462
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatg 297  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  46757500 tctctactttatctaatggtcaatatttactttctcatg 46757462  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 46814247 - 46814289
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaat 329  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||    
T  46814247 actttcccatggtgggaaagaattcctcctacccatcctaaat 46814289  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 5004236 - 5004192
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaatgt 331  Q
    ||||||||||| ||| ||||||||||| ||||||| |||||||||    
T  5004236 actttcccatggtggaaaagaattcctcctacccatcctaaatgt 5004192  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 7495239 - 7495306
Alignment:
Q  269 atctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatgttacca 336  Q
    |||||||||||||  || |||||| |||| ||||||||||||||  ||||||||||||||||| ||||    
T  7495239 atctaatggtcaagcttaactttctcatggtgggaaagaattccccctacccaccctaaatgtcacca 7495306  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 43589161 - 43589205
Alignment:
Q  286 tactttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||    
T  43589161 tactttcccatagtgggaaagaattcctcctacccaccctaaatg 43589205  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 18153434 - 18153477
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  18153434 actttcccatggtggaaaagaattcctcctacccaccctaaatg 18153477  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 42993200 - 42993243
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||    
T  42993200 acttttccatggtgggatagaattccttctacccaccctaaatg 42993243  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 35432221 - 35432264
Alignment:
Q  287 actttcccatgatgggaaagaattccttctacccaccctaaatg 330  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  35432221 acttttccatggtgggaaagaattccttctacccaccctaaatg 35432264  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 52399000 - 52399046
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaa 305  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||    
T  52399000 tctctatttaatctaatggtcaaaatttactttcccatgatgggaaa 52399046  T

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Target: scaffold0189 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 12831 - 12877
Alignment:
Q  259 tctctagtttatctaatggtcaatatttactttcccatgatgggaaa 305  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  12831 tctctagtttatctaatggtcaaaattaactttcccatggtgggaaa 12877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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