View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4668_low_2 (Length: 357)

Name: NF4668_low_2
Description: NF4668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4668_low_2
NF4668_low_2
[»] chr5 (30 HSPs)
chr5 (17-192)||(43025351-43025526)
chr5 (23-192)||(35064091-35064270)
chr5 (91-192)||(42815210-42815311)
chr5 (193-357)||(39434676-39434846)
chr5 (192-357)||(36293638-36293809)
chr5 (193-357)||(26283335-26283505)
chr5 (196-357)||(10033910-10034077)
chr5 (196-357)||(13817960-13818127)
chr5 (197-357)||(1776393-1776559)
chr5 (299-357)||(16333893-16333951)
chr5 (299-357)||(39657523-39657581)
chr5 (303-357)||(16155093-16155147)
chr5 (299-357)||(3155648-3155706)
chr5 (299-357)||(12278877-12278935)
chr5 (299-357)||(17332568-17332626)
chr5 (299-357)||(31680459-31680517)
chr5 (299-357)||(33430413-33430471)
chr5 (299-355)||(37254733-37254789)
chr5 (214-253)||(31680368-31680407)
chr5 (299-357)||(19986031-19986089)
chr5 (299-357)||(43068969-43069027)
chr5 (193-254)||(3155757-3155818)
chr5 (214-254)||(17332677-17332717)
chr5 (299-357)||(31501733-31501791)
chr5 (192-254)||(39657632-39657694)
chr5 (196-249)||(14316641-14316694)
chr5 (214-254)||(12278986-12279026)
chr5 (214-242)||(26543903-26543931)
chr5 (214-254)||(31501842-31501882)
chr5 (214-254)||(37254642-37254682)
[»] chr2 (23 HSPs)
chr2 (193-357)||(41251651-41251821)
chr2 (193-357)||(17445058-17445226)
chr2 (192-357)||(6403821-6403992)
chr2 (193-357)||(18981597-18981766)
chr2 (193-357)||(42439966-42440136)
chr2 (193-357)||(35962695-35962865)
chr2 (299-357)||(31581639-31581697)
chr2 (193-252)||(2958228-2958287)
chr2 (192-254)||(32127267-32127329)
chr2 (299-357)||(2285954-2286012)
chr2 (299-357)||(16405692-16405750)
chr2 (303-357)||(32127158-32127212)
chr2 (214-254)||(45418584-45418624)
chr2 (192-254)||(16405579-16405641)
chr2 (299-357)||(45418675-45418733)
chr2 (299-355)||(771091-771147)
chr2 (214-254)||(8147352-8147392)
chr2 (214-254)||(44084729-44084769)
chr2 (299-357)||(12756854-12756912)
chr2 (214-252)||(26237958-26237996)
chr2 (299-357)||(44084620-44084678)
chr2 (299-344)||(2958131-2958176)
chr2 (214-242)||(34523241-34523269)
[»] chr7 (18 HSPs)
chr7 (193-357)||(14777124-14777294)
chr7 (197-357)||(8394109-8394275)
chr7 (193-357)||(5555467-5555637)
chr7 (192-357)||(3114113-3114284)
chr7 (197-357)||(36630800-36630966)
chr7 (299-357)||(37002161-37002219)
chr7 (299-357)||(26624838-26624896)
chr7 (299-357)||(36658273-36658331)
chr7 (299-357)||(38638253-38638311)
chr7 (214-254)||(8867857-8867897)
chr7 (299-355)||(34389075-34389131)
chr7 (214-254)||(34389182-34389222)
chr7 (299-357)||(7002817-7002875)
chr7 (299-357)||(7048688-7048746)
chr7 (299-357)||(8867748-8867806)
chr7 (299-357)||(35090260-35090318)
chr7 (299-357)||(40920020-40920078)
chr7 (299-357)||(43184485-43184543)
[»] chr3 (21 HSPs)
chr3 (193-357)||(22968461-22968631)
chr3 (193-357)||(6269443-6269613)
chr3 (193-357)||(19390126-19390296)
chr3 (193-349)||(39771770-39771932)
chr3 (197-357)||(34084139-34084305)
chr3 (214-254)||(33040954-33040994)
chr3 (214-254)||(45182982-45183022)
chr3 (301-357)||(45335968-45336024)
chr3 (303-357)||(6930911-6930965)
chr3 (299-357)||(45183073-45183131)
chr3 (193-254)||(6503695-6503756)
chr3 (299-356)||(11018230-11018287)
chr3 (304-356)||(6503587-6503639)
chr3 (214-254)||(6931020-6931060)
chr3 (192-254)||(11018338-11018400)
chr3 (299-357)||(19565518-19565576)
chr3 (299-353)||(27935270-27935324)
chr3 (197-254)||(22922141-22922198)
chr3 (312-357)||(33041058-33041103)
chr3 (214-242)||(5354710-5354738)
chr3 (214-250)||(6890999-6891035)
[»] chr4 (38 HSPs)
chr4 (193-357)||(20129290-20129460)
chr4 (192-254)||(13012167-13012229)
chr4 (193-254)||(47500753-47500814)
chr4 (193-349)||(26439304-26439466)
chr4 (193-349)||(34407309-34407471)
chr4 (193-357)||(25930688-25930858)
chr4 (197-357)||(36382363-36382528)
chr4 (193-349)||(43355884-43356046)
chr4 (299-357)||(6235612-6235670)
chr4 (299-357)||(13012280-13012338)
chr4 (299-357)||(47500865-47500923)
chr4 (299-357)||(3292913-3292971)
chr4 (299-357)||(13392898-13392956)
chr4 (299-357)||(13396037-13396095)
chr4 (299-357)||(28877267-28877325)
chr4 (299-357)||(40529107-40529165)
chr4 (299-356)||(42333794-42333851)
chr4 (299-356)||(43143602-43143659)
chr4 (300-357)||(50205094-50205151)
chr4 (214-254)||(6690361-6690401)
chr4 (214-254)||(30216868-30216908)
chr4 (215-254)||(43143710-43143749)
chr4 (299-357)||(1817809-1817867)
chr4 (216-254)||(3293022-3293060)
chr4 (192-254)||(7769307-7769369)
chr4 (193-357)||(29319722-29319892)
chr4 (299-357)||(30216759-30216817)
chr4 (299-357)||(48989420-48989478)
chr4 (299-356)||(10352902-10352959)
chr4 (214-250)||(49908782-49908818)
chr4 (299-357)||(6690252-6690310)
chr4 (196-242)||(27363344-27363390)
chr4 (299-357)||(35546045-35546103)
chr4 (299-357)||(44156743-44156801)
chr4 (299-355)||(17511252-17511309)
chr4 (214-250)||(5517494-5517530)
chr4 (214-254)||(10353010-10353050)
chr4 (214-254)||(50205203-50205243)
[»] scaffold0069 (1 HSPs)
scaffold0069 (192-357)||(17821-17992)
[»] chr8 (17 HSPs)
chr8 (197-357)||(15838270-15838435)
chr8 (193-254)||(39914495-39914556)
chr8 (299-357)||(39914606-39914664)
chr8 (299-356)||(4404100-4404157)
chr8 (186-357)||(29728403-29728580)
chr8 (299-357)||(3648811-3648869)
chr8 (299-357)||(16788042-16788100)
chr8 (299-357)||(9877312-9877370)
chr8 (192-254)||(34136951-34137013)
chr8 (217-254)||(16788151-16788188)
chr8 (299-356)||(34136843-34136900)
chr8 (214-254)||(4404009-4404049)
chr8 (214-254)||(23402109-23402149)
chr8 (214-254)||(36408552-36408592)
chr8 (214-253)||(2729323-2729362)
chr8 (299-357)||(23402200-23402258)
chr8 (196-253)||(3648921-3648978)
[»] scaffold0002 (2 HSPs)
scaffold0002 (193-254)||(480583-480644)
scaffold0002 (299-357)||(480474-480532)
[»] chr6 (12 HSPs)
chr6 (193-254)||(398597-398658)
chr6 (299-357)||(13837913-13837971)
chr6 (299-357)||(398709-398767)
chr6 (193-357)||(34948775-34948945)
chr6 (299-357)||(18339198-18339256)
chr6 (299-357)||(28996822-28996880)
chr6 (193-254)||(13837801-13837862)
chr6 (299-357)||(29743375-29743433)
chr6 (214-254)||(18339107-18339147)
chr6 (214-254)||(28996731-28996771)
chr6 (214-249)||(13647018-13647053)
chr6 (299-357)||(33229353-33229411)
[»] chr1 (14 HSPs)
chr1 (193-254)||(26144235-26144296)
chr1 (193-357)||(7433425-7433595)
chr1 (299-357)||(26144347-26144405)
chr1 (299-355)||(17445405-17445461)
chr1 (299-354)||(32982076-32982131)
chr1 (193-251)||(23313218-23313276)
chr1 (200-254)||(32982182-32982236)
chr1 (196-254)||(42311067-42311125)
chr1 (299-355)||(35907644-35907700)
chr1 (190-254)||(41972401-41972464)
chr1 (299-351)||(42310964-42311016)
chr1 (299-357)||(3829076-3829133)
chr1 (299-355)||(321396-321452)
chr1 (214-254)||(35907553-35907593)
[»] scaffold2142 (2 HSPs)
scaffold2142 (192-254)||(501-563)
scaffold2142 (299-357)||(614-672)
[»] scaffold0502 (2 HSPs)
scaffold0502 (299-357)||(5322-5380)
scaffold0502 (214-254)||(5231-5271)
[»] scaffold0041 (1 HSPs)
scaffold0041 (299-357)||(53017-53075)
[»] scaffold0769 (1 HSPs)
scaffold0769 (214-242)||(1278-1306)
[»] scaffold0154 (1 HSPs)
scaffold0154 (214-254)||(31481-31521)
[»] scaffold0012 (1 HSPs)
scaffold0012 (214-242)||(194029-194057)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 43025351 - 43025526
Alignment:
Q  17 attaagaaccctaatcaagaaaatcaataaatcctagtacagtaacgatgaaaacagttaaaaacgatcaagattaagaaccgaccttcattggtctgag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43025351 attaagaaccctaatcaagaaaatcaataaatcctagtacagtaacgatgaaaacagttaaaaacgatcaagattaagaaccgaccttcattggtctgag 43025450  T
Q  117 cgttggtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc 192  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43025451 cgttggtgaccagaaggtcaaaatcagtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc 43025526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 35064091 - 35064270
Alignment:
Q  23 aaccctaatcaagaaaatcaataaatcctagtaca-----gtaacgatgaaaacagttaa-----aaacgatcaagattaagaaccgaccttcattggtc 112  Q
    ||||||||||||||||||||||||||||||||| |     |||| |||||||||||||||     |||||||| ||||||||||||||||||||||||||    
T  35064091 aaccctaatcaagaaaatcaataaatcctagtatacaaccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtc 35064190  T
Q  113 tgagcgttggtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc 192  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  35064191 tgagcgttagtaaccagaaggtcaaaatcagtaccccttccaaaacgcttggatacaaatatactttgtttcaatgtacc 35064270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 42815210 - 42815311
Alignment:
Q  91 taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgta 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42815210 taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcagtaccccttcctaaatgcttggatacaaatatactttgtttcaatgta 42815309  T
Q  191 cc 192  Q
    ||    
T  42815310 cc 42815311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 39434676 - 39434846
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||        ||||||||||||||| || |||||||||||     
T  39434676 catgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaag-cccattaacacattt 39434774  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||    
T  39434775 ac-aaaatgaaaaatttgggcaatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacact 39434846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 357
Target Start/End: Complemental strand, 36293809 - 36293638
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 283  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||| |||||| |||||||||||        |||||||||||||| || |||||||||||    
T  36293809 ccatgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagccc-attaacacatt 36293711  T
Q  284 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
     ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  36293710 tacaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacact 36293638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 193 - 357
Target Start/End: Complemental strand, 26283505 - 26283335
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||        ||||||||| |||||| | |||||||||||     
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttc-attaacacattt 26283407  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |             |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||    
T  26283406 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacact 26283335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 357
Target Start/End: Original strand, 10033910 - 10034077
Alignment:
Q  196 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacn 287  Q
    ||||||||||||||| | |||||||||| || ||||||||||||||| |||||||||||        |||||||||||||| || ||||||||||| ||     
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatttaca 10034008  T
Q  288 nnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
               |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  10034009 aaaagaaaaa-tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacact 10034077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 357
Target Start/End: Original strand, 13817960 - 13818127
Alignment:
Q  196 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattcacn 287  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||| ||||||||||        ||||||||||||||| || ||||||||||| ||     
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaag-cccattaacacatttac- 13818057  T
Q  288 nnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
               |||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||    
T  13818058 aaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacact 13818127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 1776559 - 1776393
Alignment:
Q  197 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 288  Q
    |||||||||||||| |  |||||||||||||||||||||||||||| |||||||||||        | |||||| |||||||| ||||||||||| ||      
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtcc-attaacacatttacaa 1776461  T
Q  289 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
              |||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||    
T  1776460 aaagaaaaa-tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacact 1776393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 16333951 - 16333893
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  16333951 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacact 16333893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 39657581 - 39657523
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  39657581 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacact 39657523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 16155093 - 16155147
Alignment:
Q  303 ggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  16155093 ggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacact 16155147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 3155706 - 3155648
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||| |||||| |||||||||||| | |||||| ||||||||||||||||||||||||    
T  3155706 tttggacaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacact 3155648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 12278935 - 12278877
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  12278935 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacact 12278877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 17332626 - 17332568
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  17332626 tttgggcaatctgaaaattttcacacgcaaataggtctcggaattttatttagcacact 17332568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 31680459 - 31680517
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  31680459 tttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacact 31680517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 33430413 - 33430471
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  33430413 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacact 33430471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 37254733 - 37254789
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcaca 355  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||    
T  37254733 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcaca 37254789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 31680368 - 31680407
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataattttt 253  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  31680368 gcgaccccgggcggtcgcccgggctcgatcgataattttt 31680407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 19986031 - 19986089
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||| |||||||||||| ||||| | |||||||||||| ||||||||||| ||||||    
T  19986031 tttgggtaatctaaaaattatcacacgcaaataggtcttgaaattttatttaacacact 19986089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 43068969 - 43069027
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| | ||| ||||||| |||| ||||||||||||||||||||    
T  43068969 tttgggcaatctgaaaattcttacatgtaaataagtctcggaattttatttagcacact 43069027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 3155818 - 3155757
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||||| ||| | |||| ||||||||||||| ||||||||||  ||||||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttg 3155757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 17332717 - 17332677
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  17332717 gcgaccccgggcgttcgcccgggctcgatcgataatttttg 17332677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 31501791 - 31501733
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| || || | |||||||||| | ||||||||||||||||||    
T  31501791 tttgggcaatctgaaaattctcgcacgcaaataggtctcgaaattttatttagcacact 31501733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 39657694 - 39657632
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||  | | |||||||| | ||||||  ||||||||||||||||||||||    
T  39657694 ccatgggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttg 39657632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 14316641 - 14316694
Alignment:
Q  196 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataat 249  Q
    ||||||||||||||| | |||| | ||||||||||||| |||||||| ||||||    
T  14316641 gggcggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 12279026 - 12278986
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||| ||||||||||||||||| |||||| |||||||||||    
T  12279026 gcgatcccgggcggtcgcccggactcgatcgataatttttg 12278986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 26543931 - 26543903
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgat 242  Q
    |||||||||||||||||||||||||||||    
T  26543931 gcgaccccgggcggtcgcccgggctcgat 26543903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 31501882 - 31501842
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||| | ||||||||||||| |||||||||||    
T  31501882 gcgaccccgggcgattgcccgggctcgatcgataatttttg 31501842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 37254642 - 37254682
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||| ||||||||||| |||||||| |||||||||||    
T  37254642 gcgaccccaggcggtcgcccaggctcgatcgataatttttg 37254682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 357
Target Start/End: Complemental strand, 41251821 - 41251651
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||        ||||||||||||||| || |||||||||||     
T  41251821 catgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaag-cccattaacacattt 41251723  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  41251722 ac-aaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacact 41251651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 357
Target Start/End: Complemental strand, 17445226 - 17445058
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg------actcaacccaaaagtcctattaacacattcac 286  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||      |||||||||||||| || ||||||||||| ||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgcactagactcaacccaaaagccc-attaacacatttac 17445128  T
Q  287 nnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
                |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  17445127 aaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacact 17445058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 357
Target Start/End: Complemental strand, 6403992 - 6403821
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacatt 283  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||| |||||| | |||||||||||    
T  6403992 ccatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttc-attaacacatt 6403894  T
Q  284 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
     |             |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||    
T  6403893 ta-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacact 6403821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 18981597 - 18981766
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||        ||||||||||||||||| ||||| |||||     
T  18981597 catgggcggttctaccgtatggcgaccc-gggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtcc-attaaaacattt 18981694  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||    
T  18981695 acaaaaagaaaaa-tttgggcaatttaaaaattgtcacacgcaaataggtcttggaattttatttagcacact 18981766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 42439966 - 42440136
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||        |||| |||||||||| || |||||||||||     
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaag-cccattaacacattt 42440064  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||||    
T  42440065 ac-aaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacact 42440136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 35962695 - 35962865
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||||||        |||||||||||||| | ||||||||||||     
T  35962695 catgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaag-cttattaacacattt 35962793  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||    
T  35962794 acaaaaagaaaat-tttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacact 35962865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 31581697 - 31581639
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  31581697 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacact 31581639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 2958287 - 2958228
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttt 252  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataatttt 2958228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 32127329 - 32127267
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||||  ||||||||||    
T  32127329 ccatgggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttg 32127267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 2285954 - 2286012
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||| ||||||| |||||||||||| | |||||||| ||||||||||||||||||||||    
T  2285954 tttgagcaatctgaaaattgtcacacgcaaataggttttggaattttatttagcacact 2286012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 16405692 - 16405750
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||| |||||| |||||||||||| | ||||| |||||||||||||||||||||||||    
T  16405692 tttggacaatctgaaaattgtcacacgcaaataagtcttggaattttatttagcacact 16405750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 32127212 - 32127158
Alignment:
Q  303 ggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||| |||||||||||| | |||||| ||||||||||||||||||||||||    
T  32127212 ggcaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacact 32127158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 45418584 - 45418624
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  45418584 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 45418624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 16405579 - 16405641
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||| | | | ||||| |||||||||||||||||| || |||||||||||    
T  16405579 ccatgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttg 16405641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 45418675 - 45418733
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | ||||||||||  |||||||||||||||||||    
T  45418675 tttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacact 45418733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 771091 - 771147
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcaca 355  Q
    |||||||||||| |||||| ||||| | |||||||||| |||| |||||||||||||    
T  771091 tttgggcaatctgaaaattctcacacgcaaataggtctcggaactttatttagcaca 771147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 8147352 - 8147392
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  8147352 gcgaccccgggcggtcgcccgggctcgatcgataatctttg 8147392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 44084769 - 44084729
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  44084769 gcgaccccgggcagtcgcccgggctcgatcgataatttttg 44084729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 12756912 - 12756854
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||| ||||||| |||||| ||||| | ||||| |||| ||||||||||||||||||||    
T  12756912 tttgagcaatctgaaaattctcacacgcaaataagtctcggaattttatttagcacact 12756854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 26237958 - 26237996
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttt 252  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  26237958 gcgaccccgggcggtcgcccgggctcgatcgatattttt 26237996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 44084678 - 44084620
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||| | | ||||||||||  |||||||||||||||||||    
T  44084678 tttgggcaatctgaaaattctcatacgcaaataggtctcagaattttatttagcacact 44084620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 2958176 - 2958131
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattt 344  Q
    |||||| ||||| |||||||||||| | ||||||||||||||||||    
T  2958176 tttgggtaatctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 34523241 - 34523269
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgat 242  Q
    |||||||||||||||||||||||||||||    
T  34523241 gcgaccccgggcggtcgcccgggctcgat 34523269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 357
Target Start/End: Complemental strand, 14777294 - 14777124
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||        ||||||||||||||| |  |||||||||||     
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaag-ctcattaacacattt 14777196  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  14777195 ac-aaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacact 14777124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 8394109 - 8394275
Alignment:
Q  197 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 288  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||||| ||||||||||| ||      
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 8394207  T
Q  289 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
              |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  8394208 aaggaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacact 8394275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 5555467 - 5555637
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||| || |||||| ||||     
T  5555467 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaag-cccattaacgcattt 5555565  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||    
T  5555566 ac-aaaaagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacact 5555637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 192 - 357
Target Start/End: Complemental strand, 3114284 - 3114113
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 283  Q
    ||||||||||||||||||| | | |||||||| |||||||||||||||||| |||||||||||        |||||||||||||| || |||||||||||    
T  3114284 ccatgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatt 3114186  T
Q  284 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
     ||            |||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||    
T  3114185 tacaaaaagaaaaa-tttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacact 3114113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 36630800 - 36630966
Alignment:
Q  197 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 288  Q
    |||||||||||||| | |||||||||| |||||||||||||||||| |||||||||||        |||||||| |||||||| ||||||||||| ||      
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 36630898  T
Q  289 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
              |||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||    
T  36630899 aaagaaaaa-tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacact 36630966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 37002219 - 37002161
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||    
T  37002219 tttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacact 37002161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 26624838 - 26624896
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  26624838 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacact 26624896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 36658273 - 36658331
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  36658273 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacact 36658331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 38638311 - 38638253
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  38638311 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacact 38638253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 8867897 - 8867857
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  8867897 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 8867857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 34389131 - 34389075
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcaca 355  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||    
T  34389131 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcaca 34389075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 34389222 - 34389182
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  34389222 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 34389182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 7002817 - 7002875
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||| ||||||||||||| ||||| | |||||||||  ||||||||||||||||||||    
T  7002817 tttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacact 7002875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 7048688 - 7048746
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||| ||||||||||||| ||||| | |||||||||  ||||||||||||||||||||    
T  7048688 tttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacact 7048746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 8867806 - 8867748
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||  |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  8867806 tttgggcaatcggaaaattttcacacgcaaataggtctcggaattttatttagcacact 8867748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 35090260 - 35090318
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||| ||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  35090260 tttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacact 35090318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 40920078 - 40920020
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||| |||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  40920078 tttggacaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacact 40920020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 43184543 - 43184485
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | ||||||||||  |||||||||||||||||||    
T  43184543 tttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacact 43184485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 357
Target Start/End: Complemental strand, 22968631 - 22968461
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||        |||| |||||||||| || |||||||||||     
T  22968631 catgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaag-cccattaacacattt 22968533  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  22968532 ac-aaaaagaaaaatttgggcaatctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacact 22968461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 357
Target Start/End: Complemental strand, 6269613 - 6269443
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 284  Q
    ||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||        |||||||||||||| || |||||||||||     
T  6269613 catgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 6269515  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  6269514 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacact 6269443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 19390126 - 19390296
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 284  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||        |||||||| ||||||| ||||||||||||     
T  19390126 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtc-tattaacacattt 19390224  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  19390225 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacact 19390296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 193 - 349
Target Start/End: Original strand, 39771770 - 39771932
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||        ||||||||||||||| || |||||||||||     
T  39771770 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaag-cccattaacacattt 39771868  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttattt 349  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  39771869 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttattt 39771932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 34084305 - 34084139
Alignment:
Q  197 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 288  Q
    |||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||        | |||||| |||||||| ||||||||||| ||      
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtcc-attaacacatttac-a 34084208  T
Q  289 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
              |||||||||| | |||||| ||||| | |||||||||||||||||||||||||||||||    
T  34084207 aaaagaaaaatttgggcaatatgaaaattatcacacgcaaataggtcttggaattttatttagcacact 34084139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 33040954 - 33040994
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  33040954 gcgaccccgggcggtcgctcgggctcgattgataatttttg 33040994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 45182982 - 45183022
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  45182982 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 45183022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 45335968 - 45336024
Alignment:
Q  301 tgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||| |||||| | ||| | |||||||||||||||||||||||||||||||    
T  45335968 tgggcaatctgaaaattcttacacgcaaataggtcttggaattttatttagcacact 45336024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 6930965 - 6930911
Alignment:
Q  303 ggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  6930965 ggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacact 6930911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 45183073 - 45183131
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| |||||   |||||||||| ||||||||||||||||||||    
T  45183073 tttgggcaatctgaaaattctcacacacaaataggtctcggaattttatttagcacact 45183131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 6503756 - 6503695
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||  |||||   ||||||||||||||||||||||||||||| ||| |||||||    
T  6503756 catgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttg 6503695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 11018287 - 11018230
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacac 356  Q
    |||||||||||| |||||| ||||| | ||||||||||  ||||||||||||||||||    
T  11018287 tttgggcaatctgaaaattctcacacgcaaataggtctcagaattttatttagcacac 11018230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 6503639 - 6503587
Alignment:
Q  304 gcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacac 356  Q
    ||||||| |||||| ||||||| |||||||||| ||| |||||||||||||||    
T  6503639 gcaatctgaaaattctcacaggcaaataggtctcggatttttatttagcacac 6503587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 6931060 - 6931020
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  6931060 gcgaccccggacggtcgcccgggctcgatcgataatttttg 6931020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 11018400 - 11018338
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||  |||||   ||||| |||||||||||||| |||||||| |||||||||||    
T  11018400 ccatgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttg 11018338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 19565576 - 19565518
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||| |||||| |||||| | ||| | |||||||||| ||||||||||||||||||||    
T  19565576 tttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacact 19565518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 27935270 - 27935324
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagca 353  Q
    |||||||||||| |||||| ||| | | |||||||||| ||||||||||||||||    
T  27935270 tttgggcaatctgaaaattctcatacgaaaataggtctcggaattttatttagca 27935324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 22922141 - 22922198
Alignment:
Q  197 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||| ||||| | |||| ||||||||||||| |||||||||| ||| |||||||    
T  22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttg 22922198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 33041058 - 33041103
Alignment:
Q  312 aaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  33041058 aaaattttcacacgcaaataggtctcggaattttatttagcacact 33041103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 5354710 - 5354738
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgat 242  Q
    |||||||||||||||||||||||||||||    
T  5354710 gcgaccccgggcggtcgcccgggctcgat 5354738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 6890999 - 6891035
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatt 250  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  6890999 gcgacaccgggcggtcgcccgggctcgatcgataatt 6891035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 20129290 - 20129460
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||| || |||||||||||     
T  20129290 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaag-cccattaacacattt 20129388  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||| |||||||||||| ||||||||||||| ||||||||||| |||||||    
T  20129389 ac-aaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttagaattttatttggcacact 20129460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 13012167 - 13012229
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13012167 ccatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttg 13012229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 47500753 - 47500814
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttg 47500814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 193 - 349
Target Start/End: Complemental strand, 26439466 - 26439304
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||        ||||||||||||||| || |||||||||||     
T  26439466 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaag-cccattaacacattt 26439368  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttattt 349  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  26439367 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttattt 26439304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 193 - 349
Target Start/End: Complemental strand, 34407471 - 34407309
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||        ||||||||||||||| || |||||||||||     
T  34407471 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaag-cccattaacacattt 34407373  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttattt 349  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  34407372 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttattt 34407309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 25930688 - 25930858
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||||||  ||||||||||        |||||||||||||| || |||||||||||     
T  25930688 catgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagccc-attaacacattt 25930786  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||    
T  25930787 acaaaaagaaaaa-tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacact 25930858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 36382528 - 36382363
Alignment:
Q  197 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 288  Q
    |||||||||||||| | |||||||||||||||||||||||||||||  ||||||||||        |||||||| |||||||| ||||||||||| ||      
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 36382430  T
Q  289 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
              ||||| |||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  36382429 aagaaaaa--tttggacaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacact 36382363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 349
Target Start/End: Original strand, 43355884 - 43356046
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||| | ||||||||||        ||||||||||||||| || |||||||||||     
T  43355884 catgggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaag-cccattaacacattt 43355982  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttattt 349  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  43355983 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttattt 43356046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 6235612 - 6235670
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||    
T  6235612 tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacact 6235670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 13012280 - 13012338
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||    
T  13012280 tttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacact 13012338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 47500865 - 47500923
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||    
T  47500865 tttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacact 47500923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 3292971 - 3292913
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  3292971 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacact 3292913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 13392956 - 13392898
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||||||||||||||||| ||||| | |||||||||| | ||||||||||||||||||    
T  13392956 tttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacact 13392898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 13396095 - 13396037
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||||||||||||||||| ||||| | |||||||||| | ||||||||||||||||||    
T  13396095 tttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacact 13396037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 28877325 - 28877267
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||| |||||||||||| ||||| | |||||||||| ||||||||||||||||||||    
T  28877325 tttgggaaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacact 28877267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 40529107 - 40529165
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||| |||| | |||||||||||| | |||||||||||||||||||||||||||||||    
T  40529107 tttggacaatttgaaaattgtcacatgcaaataggtcttggaattttatttagcacact 40529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 42333851 - 42333794
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacac 356  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||    
T  42333851 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacac 42333794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 43143659 - 43143602
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacac 356  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||    
T  43143659 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacac 43143602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 50205151 - 50205094
Alignment:
Q  300 ttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||| |||||| |||||| ||||| | |||||||||||||||||||||||||||||||    
T  50205151 ttggacaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacact 50205094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 6690401 - 6690361
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  6690401 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 6690361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 30216908 - 30216868
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  30216908 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 30216868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 43143749 - 43143710
Alignment:
Q  215 cgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  43143749 cgaccccgggcggtcgcccgggctcgatcgataatttttg 43143710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 1817809 - 1817867
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||||||||||||||||| | ||| | |||||||||| ||||||||||||| ||||||    
T  1817809 tttgggcaatctaaaaattcttacacgcaaataggtctcggaattttatttaacacact 1817867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 3293060 - 3293022
Alignment:
Q  216 gaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  3293060 gaccccgggcggtcgcccgggctcgatcgataatttttg 3293022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 7769307 - 7769369
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||  |||||   |||||||| |||||||||||||||||||| |||||||||||    
T  7769307 ccatgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 357
Target Start/End: Complemental strand, 29319892 - 29319722
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||| | | |||||| |||||||| || |||||||| ||||||||||        |||||||||||||| ||| |||||||||||     
T  29319892 catgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaa-tcccattaacacattt 29319794  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||| ||||||| ||||||||||||   ||||| |||||||||||||||||||||||||    
T  29319793 ac-aaaaagaaaaatttgagcaatctgaaaattgtcacacacaaataagtcttggaattttatttagcacact 29319722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 30216817 - 30216759
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||| ||| ||||||||||||||||||||    
T  30216817 tttgggcaatctgaaaattctcacatgcaaatagatctcggaattttatttagcacact 30216759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 48989420 - 48989478
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||| | | |||||||||| ||||||||||||||||||||    
T  48989420 tttgggcaatctgaaaattctcatacgcaaataggtctcggaattttatttagcacact 48989478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 10352959 - 10352902
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacac 356  Q
    |||||||||||| |||||| | ||| | |||||||||| |||||||||||||||||||    
T  10352959 tttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacac 10352902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 49908818 - 49908782
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatt 250  Q
    ||||||||||||||||||||||||||||| |||||||    
T  49908818 gcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 6690310 - 6690252
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||||||| || |||||| ||||| | |||||||||| | ||||||||||||||||||    
T  6690310 tttgggcaaactgaaaattctcacacgcaaataggtctcgaaattttatttagcacact 6690252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 27363344 - 27363390
Alignment:
Q  196 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgat 242  Q
    |||||||| |||||| | |||||| ||||||||||||||||||||||    
T  27363344 gggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgat 27363390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 35546045 - 35546103
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||| |||||  |||||||||||||||||||    
T  35546045 tttgggcaatctgaaaattctcacacgcaaatgggtctctgaattttatttagcacact 35546103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 44156743 - 44156801
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||| |||||| |||||| || || | |||||||||| ||||||||||||||||||||    
T  44156743 tttggacaatctgaaaattctctcacgcaaataggtctcggaattttatttagcacact 44156801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 17511309 - 17511252
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttgg-aattttatttagcaca 355  Q
    |||||||||| | |||||||| ||| | ||||||||||||| ||||||||||||||||    
T  17511309 tttgggcaatttgaaaattgttacacgcaaataggtcttggaaattttatttagcaca 17511252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 5517530 - 5517494
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatt 250  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  5517530 gcgaccccgggcggtcgcctgggctcgatcgataatt 5517494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 10353050 - 10353010
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||| ||||||||||||||||| || |||||||||||    
T  10353050 gcgacccctggcggtcgcccgggctcaatcgataatttttg 10353010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 50205243 - 50205203
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  50205243 gcgatcccgggcggtcgcccgagctcgatcgataatttttg 50205203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 357
Target Start/End: Original strand, 17821 - 17992
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 283  Q
    ||||||||||||||||||||| ||||||||| ||| ||| ||||||||||| |||||||||||        |||||||||||||| || |||||||||||    
T  17821 ccatgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatt 17919  T
Q  284 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
     ||            |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||    
T  17920 tacaaaaagaaaaa-tttgggcaatctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacact 17992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 15838270 - 15838435
Alignment:
Q  197 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 288  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||        |||||||| |||||||| ||||||||||| ||      
T  15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttac-- 15838366  T
Q  289 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
              |||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||    
T  15838367 aaaagaaaaatttgggcaatctgaaaattttcacacgcaaataggtcttggaattttatttagcacact 15838435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 39914495 - 39914556
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39914495 catggacggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttg 39914556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 39914606 - 39914664
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||    
T  39914606 tttgggcaatttgaaaattgtcacaagtaaataggtcttggaattttatttggcacact 39914664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 4404100 - 4404157
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacac 356  Q
    ||||||||||||||||||| ||||| | |||||||||| |||||||||||||||||||    
T  4404100 tttgggcaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacac 4404157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 357
Target Start/End: Complemental strand, 29728580 - 29728403
Alignment:
Q  186 atgtacccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaa 277  Q
    ||||||||| ||||||||||||||| | |||||||||| |||||||||| ||||||| ||||| ||||        ||||||||||||||| |  |||||    
T  29728580 atgtacccaggggcggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaag-ctcattaa 29728482  T
Q  278 cacattcacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||| ||            |||||||||||| |||||||| ||| | ||||||||||| |||||||||||||||||||    
T  29728481 cacatttac-aaaaagaaaaatttgggcaatctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacact 29728403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 3648869 - 3648811
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||||||||| | || ||||| ||||||||||||||||||||||    
T  3648869 tttgggcaatctgaaaattgtcacacgcaagtaggttttggaattttatttagcacact 3648811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 16788100 - 16788042
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||| | ||||| | |||||||||||||||||||||||||||||||    
T  16788100 tttgggcaatcttaaaactctcacacgcaaataggtcttggaattttatttagcacact 16788042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 9877312 - 9877370
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| | ||||||||||||||||||    
T  9877312 tttgggcaatctgaaaattctcacatgcaaataggtctcgaaattttatttagcacact 9877370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 34137013 - 34136951
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||| ||||  ||||| | ||||||||| ||||||||||||||||||| |||||||||||    
T  34137013 ccatgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttg 34136951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 16788188 - 16788151
Alignment:
Q  217 accccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||||||||||||||||| |||||||||||    
T  16788188 accccgggcggtcgcccgggctcgatcgataatttttg 16788151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 34136900 - 34136843
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacac 356  Q
    |||||||||||| |||||| ||||| | |||||||||| | |||||||||||||||||    
T  34136900 tttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacac 34136843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 4404009 - 4404049
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  4404009 gcgaccccaggcggtcgcccgggctcgatcgataatttttg 4404049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 23402109 - 23402149
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  23402109 gcgaccccgggcggtcgcccgggctcgatcgataatctttg 23402149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 36408552 - 36408592
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  36408552 gcgacctcgggcggtcgcccgggctcgatcgataatttttg 36408592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 2729362 - 2729323
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataattttt 253  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  2729362 gcgaccccgggcggacgcccgggctcgatcgataattttt 2729323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 23402200 - 23402258
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| | ||||||||||| ||||||    
T  23402200 tttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttaacacact 23402258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 3648978 - 3648921
Alignment:
Q  196 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt 253  Q
    ||||||||||||||| | |||| || || | |||||||||||||||| ||||||||||    
T  3648978 gggcggttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttt 3648921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 480644 - 480583
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  480644 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttg 480583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 480532 - 480474
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||    
T  480532 tttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacact 480474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 398597 - 398658
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttg 398658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 13837913 - 13837971
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  13837913 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacact 13837971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 398709 - 398767
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||    
T  398709 tttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacact 398767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 357
Target Start/End: Complemental strand, 34948945 - 34948775
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||| | |||||||| ||||||||||| |||||||| ||||||||||        ||||||||||||||| || |||||||||||     
T  34948945 catgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaag-cccattaacacattt 34948847  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||| ||||||||||||   |||||| ||||| ||||||||||||||||||    
T  34948846 ac-aaaaagaaaaatttgggcaatctgaaaattgtcacacacaaatagatcttgaaattttatttagcacact 34948775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 18339198 - 18339256
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  18339198 tttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacact 18339256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 28996822 - 28996880
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  28996822 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacact 28996880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 13837801 - 13837862
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||||||||| | ||||||||||||| |||| |||| ||||| |||||||||||    
T  13837801 catgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttg 13837862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 29743375 - 29743433
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| | ||| | |||||||||| ||||||||||||||||||||    
T  29743375 tttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacact 29743433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 18339107 - 18339147
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  18339107 gcgaccccgggcggtcgcccgggctcgatcaataatttttg 18339147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 28996731 - 28996771
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  28996731 gcgaccccgggcggtcgcccgagctcgatcgataatttttg 28996771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 13647018 - 13647053
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataat 249  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13647018 gcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 33229411 - 33229353
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| | ||| ||||||| |||| || |||||||||||||||||    
T  33229411 tttgggcaatctgaaaattcttacacgtaaataagtctcgggattttatttagcacact 33229353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 26144235 - 26144296
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26144235 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttg 26144296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 7433425 - 7433595
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 284  Q
    |||||||||||||||||| | || |||||||||||||||||| |||||||  ||||||||||        |||||||||||||| || |||||||||||     
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagccc-attaacacattt 7433523  T
Q  285 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||            |||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||    
T  7433524 acaaaaagaaaat-tttgggcaatctaaaaattgtcacacacaaataggtcttgaaattttatttagcacact 7433595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 26144347 - 26144405
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||    
T  26144347 tttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacact 26144405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 17445405 - 17445461
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcaca 355  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||    
T  17445405 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcaca 17445461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 32982131 - 32982076
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcac 354  Q
    ||||| |||||| ||||||||||||   ||||||||||||||||||||||||||||    
T  32982131 tttggacaatctgaaaattgtcacacacaaataggtcttggaattttatttagcac 32982076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 23313218 - 23313276
Alignment:
Q  193 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattt 251  Q
    |||||||||||||||||| | |||| | |||||||| ||||||||||||||||| ||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgattt 23313276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 32982236 - 32982182
Alignment:
Q  200 ggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||| | |||||||||||||||||| ||||| |||| |||||||||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttg 32982182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 42311125 - 42311067
Alignment:
Q  196 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||||| | |||||||| | || ||||||||||||||| |||||||||||    
T  42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttg 42311067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 35907644 - 35907700
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcaca 355  Q
    |||||| ||||| |||||| ||||| | |||||||||| ||||||||||||||||||    
T  35907644 tttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcaca 35907700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 41972464 - 41972401
Alignment:
Q  190 acccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||| ||||||||| |||||  |||||||||||||||||| || |||||||| |||||||||||    
T  41972464 acccaggggcggttccaccgtccagcgaccccgggcggtcg-cctggctcgatcgataatttttg 41972401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 42311016 - 42310964
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttag 351  Q
    |||||||||||| |||||||||||| | ||||| |||||| ||||||||||||    
T  42311016 tttgggcaatctgaaaattgtcacacgcaaataagtcttgaaattttatttag 42310964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 3829076 - 3829133
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||| | | |||||||||| ||||||||||||||||||||    
T  3829076 tttgggcaatctgaaaattttcatacgcaaataggtct-ggaattttatttagcacact 3829133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 321452 - 321396
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcaca 355  Q
    |||||||||||| |||||| ||| | | |||||||||| ||||||||||||| ||||    
T  321452 tttgggcaatctgaaaattctcatatgcaaataggtctcggaattttatttaacaca 321396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 35907553 - 35907593
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  35907553 gcgacctcgggcggtcgcccgggcttgatcgataatttttg 35907593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 501 - 563
Alignment:
Q  192 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||    
T  501 ccatgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttg 563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 614 - 672
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||    
T  614 tttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacact 672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 5322 - 5380
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  5322 tttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacact 5380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 5231 - 5271
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  5231 gcgaccccgggcggtcgcccgggctcgatcaataatttttg 5271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 53017 - 53075
Alignment:
Q  299 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacact 357  Q
    ||||| |||||| |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  53017 tttggacaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacact 53075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 1278 - 1306
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgat 242  Q
    |||||||||||||||||||||||||||||    
T  1278 gcgaccccgggcggtcgcccgggctcgat 1306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 31481 - 31521
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgattgataatttttg 254  Q
    |||||||| | |||||||||||||||||| |||||||||||    
T  31481 gcgaccccagacggtcgcccgggctcgatcgataatttttg 31521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 194029 - 194057
Alignment:
Q  214 gcgaccccgggcggtcgcccgggctcgat 242  Q
    |||||||||||||||||||||||||||||    
T  194029 gcgaccccgggcggtcgcccgggctcgat 194057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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