View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4668_low_3 (Length: 242)
Name: NF4668_low_3
Description: NF4668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4668_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 5300048 - 5300289
Alignment:
| Q |
4 |
agtgaaatgaacaaaatgattagaaatgcaatacggatcagtcgccaaaattttgacccgatcacgaactnnnnnnncattaacaaatgctccaaggaca |
103 |
Q |
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| T |
5300048 |
agtgaaatgaacaaaatgattagaaatgcaatacggatcagtcgccaaaattctgacc-gatcacgaactaagaaaacattaacaaatgctccaaggaca |
5300146 |
T |
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| Q |
104 |
ttgtttaagcatttaaaagaaacannnnnnnnnn------atagaaaatgatgtaattactactttgacagatatttgacttatattttcatgacaattt |
197 |
Q |
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| T |
5300147 |
ttgtttaagcatttaaaagaaacattttttttttttttttatagaaaatgatgtaattactactttgacagatatttgacttatattttcaagacaattt |
5300246 |
T |
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| Q |
198 |
ttgttgaatatattcattaaacaatgtctttagagcatccaca |
240 |
Q |
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| T |
5300247 |
ttgttgaatatattccttaaacaatgtctttagagcatccaca |
5300289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 36563987 - 36563948
Alignment:
| Q |
83 |
ttaacaaatgctccaaggacattgtttaagcatttaaaag |
122 |
Q |
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| T |
36563987 |
ttaacaagtgctccaagggcattgtttaagcatttaaaag |
36563948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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