View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4669-Insertion-12 (Length: 198)
Name: NF4669-Insertion-12
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4669-Insertion-12 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0312 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 6e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 440468 - 440673
Alignment:
| Q |
8 |
gcagagatgtagtgattgtaggaaattttgaccgcgaaaattagactgctatagaaaactatttgacaaaactttataccaaatggcatacagtaga--- |
104 |
Q |
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| T |
440468 |
gcagagatgcagtgattgtaggaaattttgaccgcgaaaattagactgctatagaaaactatttgacaaaactttatactaaatggcatacagtagaata |
440567 |
T |
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| Q |
105 |
------------ctgcacaaaatccggattcattcataagcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaa |
192 |
Q |
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| T |
440568 |
atagtaatttgactgcacaaaatccggattcattcataagcaataccttacgaaaaggaattaaagctgtcagcccaacaaagtaagaaacaaagagaaa |
440667 |
T |
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| Q |
193 |
accagt |
198 |
Q |
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|||||| |
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| T |
440668 |
accagt |
440673 |
T |
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Target: chr1; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 410027 - 410118
Alignment:
| Q |
107 |
gcacaaaatccggattcattcataagcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaaaccagt |
198 |
Q |
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| T |
410027 |
gcacaaaatccagattcattcataaccaatacctttctaaagggtattaatgctgtcagcccaacaaagtaagtaacaaagagaaagccagt |
410118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 402955 - 403044
Alignment:
| Q |
103 |
gactgcacaaaatccggattcattcataagcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaa |
192 |
Q |
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| T |
402955 |
gactgcacaaaatcaagaatcattcataagcaatacctttctaaagggaattaatgctgttagcccaacaaagtaagtaacaaagagaaa |
403044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 428021 - 428081
Alignment:
| Q |
132 |
gcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaa |
192 |
Q |
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| T |
428021 |
gcaatacctttctaaagggaattaatgctgttagcccaacaaagtaagtaacaaatagaaa |
428081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 60; Significance: 8e-26; HSPs: 2)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 20543 - 20452
Alignment:
| Q |
107 |
gcacaaaatccggattcattcataagcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaaaccagt |
198 |
Q |
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| T |
20543 |
gcacaaaatccagattcattcataaccaatacctttctaaagggtattaatgctgtcagcccaacaaagtaagtaacaaagagaaagccagt |
20452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 2529 - 2469
Alignment:
| Q |
132 |
gcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaa |
192 |
Q |
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| T |
2529 |
gcaatacctttctaaagggaattaatgctgttagcccaacaaagtaagtaacaaatagaaa |
2469 |
T |
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