View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4669-Insertion-2 (Length: 1021)

Name: NF4669-Insertion-2
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4669-Insertion-2
NF4669-Insertion-2
[»] chr3 (37 HSPs)
chr3 (332-460)||(54301508-54301641)
chr3 (515-627)||(54301342-54301454)
chr3 (174-328)||(54540730-54540887)
chr3 (174-328)||(54539759-54539916)
chr3 (797-881)||(54301088-54301172)
chr3 (174-328)||(8456482-8456639)
chr3 (174-328)||(7267648-7267804)
chr3 (188-328)||(49398131-49398273)
chr3 (196-311)||(4271464-4271579)
chr3 (174-328)||(22776752-22776909)
chr3 (174-328)||(49216251-49216408)
chr3 (174-328)||(19984853-19985010)
chr3 (208-311)||(55191969-55192072)
chr3 (708-747)||(54301222-54301261)
chr3 (231-328)||(29931230-29931330)
chr3 (231-328)||(29980384-29980484)
chr3 (208-328)||(534503-534626)
chr3 (218-311)||(6249633-6249725)
chr3 (208-328)||(7758406-7758529)
chr3 (174-275)||(10457600-10457701)
chr3 (208-328)||(12700179-12700300)
chr3 (174-245)||(22775836-22775907)
chr3 (231-328)||(29932696-29932795)
chr3 (231-328)||(29981850-29981949)
chr3 (174-308)||(31645000-31645134)
chr3 (174-328)||(7268767-7268923)
chr3 (226-328)||(12703492-12703596)
chr3 (208-328)||(34019119-34019240)
chr3 (232-328)||(46721218-46721317)
chr3 (208-328)||(47610554-47610677)
chr3 (241-328)||(24516464-24516554)
chr3 (208-315)||(47609717-47609824)
chr3 (226-328)||(47614189-47614294)
chr3 (257-316)||(53614838-53614897)
chr3 (218-311)||(6170296-6170387)
chr3 (251-328)||(51038807-51038887)
chr3 (218-315)||(51470439-51470536)
[»] chr4 (36 HSPs)
chr4 (174-327)||(31599794-31599950)
chr4 (174-328)||(31600925-31601082)
chr4 (174-328)||(35934348-35934503)
chr4 (188-311)||(52491561-52491684)
chr4 (8-70)||(31600060-31600122)
chr4 (175-328)||(35935474-35935630)
chr4 (174-315)||(21178016-21178157)
chr4 (188-328)||(8757679-8757820)
chr4 (174-276)||(10448200-10448302)
chr4 (174-328)||(26421562-26421718)
chr4 (208-328)||(1835076-1835199)
chr4 (218-328)||(19750559-19750671)
chr4 (218-328)||(19789135-19789247)
chr4 (231-328)||(33310086-33310183)
chr4 (208-328)||(1290172-1290295)
chr4 (188-324)||(8758791-8758930)
chr4 (227-328)||(8155742-8155845)
chr4 (208-315)||(13509333-13509440)
chr4 (218-328)||(25684938-25685051)
chr4 (218-328)||(48780252-48780365)
chr4 (208-328)||(1834123-1834247)
chr4 (174-276)||(10447066-10447168)
chr4 (208-328)||(1289101-1289224)
chr4 (208-313)||(37728539-37728644)
chr4 (208-315)||(5525379-5525486)
chr4 (218-328)||(10470550-10470663)
chr4 (226-328)||(12129627-12129732)
chr4 (257-328)||(17382997-17383070)
chr4 (205-319)||(33296239-33296353)
chr4 (208-328)||(10471362-10471485)
chr4 (208-328)||(25685796-25685919)
chr4 (234-311)||(27257960-27258037)
chr4 (258-328)||(49308051-49308123)
chr4 (233-328)||(1964440-1964538)
chr4 (257-328)||(17388234-17388307)
chr4 (253-328)||(55602380-55602457)
[»] chr5 (30 HSPs)
chr5 (174-315)||(28539760-28539901)
chr5 (174-327)||(36486428-36486584)
chr5 (174-328)||(28538680-28538837)
chr5 (192-315)||(36485320-36485443)
chr5 (192-275)||(1797255-1797338)
chr5 (174-328)||(40255612-40255769)
chr5 (8-70)||(28539612-28539673)
chr5 (188-328)||(33160241-33160383)
chr5 (208-328)||(19752916-19753038)
chr5 (218-328)||(25523073-25523186)
chr5 (218-312)||(2686385-2686479)
chr5 (218-315)||(19754114-19754211)
chr5 (174-276)||(24332972-24333074)
chr5 (208-328)||(16650829-16650952)
chr5 (218-328)||(21835045-21835157)
chr5 (259-315)||(2685764-2685820)
chr5 (208-276)||(42195191-42195259)
chr5 (218-328)||(5777905-5778016)
chr5 (208-315)||(42196174-42196281)
chr5 (174-247)||(5961494-5961567)
chr5 (34-70)||(36486277-36486313)
chr5 (218-293)||(25055454-25055529)
chr5 (238-328)||(25056385-25056478)
chr5 (174-316)||(1015503-1015645)
chr5 (258-319)||(18154509-18154570)
chr5 (257-328)||(25524150-25524225)
chr5 (245-315)||(33158118-33158188)
chr5 (258-315)||(1016887-1016944)
chr5 (208-328)||(5778810-5778933)
chr5 (208-328)||(22940597-22940719)
[»] scaffold0632 (2 HSPs)
scaffold0632 (189-328)||(3263-3404)
scaffold0632 (8-70)||(3089-3152)
[»] chr6 (19 HSPs)
chr6 (188-328)||(16704451-16704594)
chr6 (188-328)||(1829557-1829700)
chr6 (174-315)||(10785853-10785994)
chr6 (188-312)||(26574642-26574765)
chr6 (183-328)||(26575003-26575149)
chr6 (208-328)||(5658760-5658883)
chr6 (217-316)||(10784612-10784711)
chr6 (218-315)||(17496817-17496915)
chr6 (217-337)||(16703565-16703685)
chr6 (208-328)||(3721616-3721739)
chr6 (208-328)||(7316268-7316391)
chr6 (174-238)||(29473174-29473238)
chr6 (208-274)||(6842257-6842323)
chr6 (208-328)||(8659269-8659392)
chr6 (208-328)||(8660178-8660300)
chr6 (174-271)||(14822424-14822521)
chr6 (208-273)||(27437890-27437955)
chr6 (208-328)||(34834553-34834676)
chr6 (174-276)||(14823515-14823617)
[»] chr8 (33 HSPs)
chr8 (175-315)||(18978039-18978179)
chr8 (186-328)||(18979072-18979217)
chr8 (195-328)||(29968298-29968433)
chr8 (186-315)||(18970930-18971059)
chr8 (188-315)||(24122902-24123029)
chr8 (188-329)||(45112874-45113016)
chr8 (218-328)||(32207309-32207420)
chr8 (174-311)||(12351945-12352082)
chr8 (208-328)||(22221338-22221461)
chr8 (208-328)||(22227680-22227803)
chr8 (208-328)||(40471121-40471243)
chr8 (208-311)||(1823576-1823680)
chr8 (208-312)||(1824052-1824156)
chr8 (208-311)||(1858021-1858125)
chr8 (208-312)||(1858497-1858601)
chr8 (218-328)||(2378868-2378977)
chr8 (218-328)||(5513986-5514098)
chr8 (208-328)||(10007737-10007860)
chr8 (175-328)||(30568891-30569046)
chr8 (174-276)||(17844334-17844435)
chr8 (208-328)||(10006348-10006471)
chr8 (192-328)||(11287780-11287919)
chr8 (174-328)||(12353301-12353456)
chr8 (259-319)||(40469356-40469416)
chr8 (188-327)||(45114471-45114612)
chr8 (218-328)||(22220392-22220505)
chr8 (208-315)||(30336475-30336582)
chr8 (208-275)||(34625174-34625241)
chr8 (183-277)||(18488211-18488305)
chr8 (258-328)||(5514294-5514366)
chr8 (208-328)||(8388468-8388589)
chr8 (227-284)||(24359858-24359915)
chr8 (218-311)||(30335663-30335756)
[»] chr2 (26 HSPs)
chr2 (188-328)||(36450875-36451017)
chr2 (174-314)||(22587522-22587661)
chr2 (218-328)||(22848195-22848308)
chr2 (174-328)||(36449782-36449939)
chr2 (174-328)||(7899822-7899979)
chr2 (209-328)||(22587929-22588050)
chr2 (190-328)||(38840449-38840590)
chr2 (231-328)||(8535653-8535751)
chr2 (204-328)||(18904371-18904498)
chr2 (218-328)||(23869519-23869631)
chr2 (258-319)||(24476868-24476929)
chr2 (208-312)||(11258785-11258889)
chr2 (208-311)||(13570531-13570634)
chr2 (208-324)||(18300699-18300815)
chr2 (231-328)||(8534587-8534685)
chr2 (216-275)||(1410060-1410119)
chr2 (208-315)||(18797267-18797374)
chr2 (191-277)||(32739709-32739795)
chr2 (195-281)||(41878148-41878234)
chr2 (174-271)||(7898755-7898852)
chr2 (208-328)||(13030296-13030416)
chr2 (208-328)||(18299377-18299500)
chr2 (188-281)||(38839296-38839389)
chr2 (174-328)||(11257626-11257783)
chr2 (252-315)||(18868944-18869007)
chr2 (208-328)||(11938763-11938885)
[»] chr1 (36 HSPs)
chr1 (188-328)||(39699721-39699863)
chr1 (208-328)||(52274972-52275095)
chr1 (174-281)||(44411906-44412013)
chr1 (218-316)||(36613888-36613986)
chr1 (188-313)||(33088089-33088214)
chr1 (174-315)||(14999304-14999442)
chr1 (174-328)||(45149910-45150067)
chr1 (208-328)||(24422804-24422927)
chr1 (183-314)||(14999904-15000035)
chr1 (208-328)||(51684370-51684493)
chr1 (205-328)||(51685736-51685862)
chr1 (208-315)||(43058805-43058912)
chr1 (174-328)||(45148585-45148741)
chr1 (191-328)||(39698567-39698706)
chr1 (208-328)||(24426049-24426172)
chr1 (208-276)||(40384784-40384852)
chr1 (226-328)||(33088609-33088714)
chr1 (188-315)||(45157163-45157290)
chr1 (210-276)||(31194112-31194178)
chr1 (174-276)||(39153056-39153158)
chr1 (208-328)||(11437173-11437296)
chr1 (174-303)||(39151963-39152092)
chr1 (218-311)||(43378697-43378790)
chr1 (174-281)||(44404496-44404603)
chr1 (208-328)||(50680336-50680458)
chr1 (218-328)||(52276147-52276260)
chr1 (232-328)||(23980464-23980563)
chr1 (208-328)||(35594221-35594342)
chr1 (226-328)||(41364833-41364937)
chr1 (208-328)||(52827351-52827474)
chr1 (208-312)||(43059980-43060084)
chr1 (221-328)||(50681595-50681701)
chr1 (218-292)||(2940308-2940382)
chr1 (241-311)||(30249497-30249567)
chr1 (258-315)||(7674547-7674603)
chr1 (208-328)||(11436046-11436169)
[»] chr7 (24 HSPs)
chr7 (208-328)||(7500459-7500581)
chr7 (208-315)||(31659643-31659750)
chr7 (183-327)||(14999104-14999249)
chr7 (195-307)||(48933695-48933805)
chr7 (174-313)||(42886226-42886365)
chr7 (208-328)||(18371428-18371551)
chr7 (174-328)||(7501791-7501949)
chr7 (208-316)||(22629505-22629613)
chr7 (208-315)||(18372431-18372538)
chr7 (174-328)||(34352726-34352883)
chr7 (253-315)||(48934922-48934984)
chr7 (174-267)||(14998048-14998140)
chr7 (208-328)||(21505420-21505541)
chr7 (208-328)||(22630426-22630549)
chr7 (227-319)||(47369797-47369889)
chr7 (257-319)||(43899462-43899524)
chr7 (208-328)||(17781665-17781788)
chr7 (218-315)||(31949786-31949883)
chr7 (278-328)||(46483552-46483604)
chr7 (208-328)||(127341-127462)
chr7 (218-328)||(3227578-3227691)
chr7 (218-328)||(31660993-31661106)
chr7 (218-315)||(3227127-3227224)
chr7 (258-328)||(43900512-43900584)
[»] scaffold2034 (2 HSPs)
scaffold2034 (174-328)||(237-394)
scaffold2034 (174-311)||(918-1055)
[»] scaffold0302 (2 HSPs)
scaffold0302 (178-328)||(17474-17627)
scaffold0302 (188-313)||(18730-18855)
[»] scaffold0059 (2 HSPs)
scaffold0059 (174-319)||(3691-3836)
scaffold0059 (174-328)||(4670-4826)
[»] scaffold0294 (1 HSPs)
scaffold0294 (218-328)||(5422-5535)
[»] scaffold0186 (1 HSPs)
scaffold0186 (187-328)||(23085-23227)
[»] scaffold0049 (2 HSPs)
scaffold0049 (218-328)||(7399-7512)
scaffold0049 (208-248)||(7893-7933)
[»] scaffold0019 (1 HSPs)
scaffold0019 (208-328)||(60094-60217)
[»] scaffold0003 (1 HSPs)
scaffold0003 (208-273)||(49407-49472)
[»] scaffold0586 (1 HSPs)
scaffold0586 (218-276)||(6402-6460)
[»] scaffold0093 (2 HSPs)
scaffold0093 (208-328)||(2439-2561)
scaffold0093 (208-328)||(7062-7184)
[»] scaffold0320 (1 HSPs)
scaffold0320 (208-273)||(19550-19615)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 3e-57; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 332 - 460
Target Start/End: Complemental strand, 54301641 - 54301508
Alignment:
Q  332 aaaataaataaaaagagaagggctggagagggccgtgggtgggcccacagtgaccagagtggcaggctgtccggttgggttaagaaatgagaactct--- 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  54301641 aaaataaataaaaagagaagggctggagagggccgtgggtgggcccacagtgaccagagtggcaggctgtccggttgggttaagaaatgagaactctcaa 54301542  T
Q  429 --caaacacaacaaccctgtcttggcctggcctg 460  Q
      ||||||||||||||||||||||||||||||||    
T  54301541 atcaaacacaacaaccctgtcttggcctggcctg 54301508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 515 - 627
Target Start/End: Complemental strand, 54301454 - 54301342
Alignment:
Q  515 gttccgttcgttccctttatcgccgttacttgctcctgttcgtatccaatactagtatcttttttggttgattacatacttacatataataacagtaacg 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54301454 gttccgttcgttccctttatcgccgttacttgctcctgttcgtatccaatactagtatcttttttggttgattacatatttacatataataacagtaacg 54301355  T
Q  615 tacacacgcatcc 627  Q
    |||||||||||||    
T  54301354 tacacacgcatcc 54301342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 54540730 - 54540887
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||| | ||| |||||||||||||||||    
T  54540730 cacacgtggcatgccacgtaggcattgaccggtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggccaaaattgtagttttt 54540829  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    ||| |||  || ||||||||  |||||||| |||||||   |||||||||||||||||    
T  54540830 gtacttaaggggtcaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttt 54540887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 54539916 - 54539759
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||| || ||||||||| ||||||||||||||||||||||||||||||   ||||||||| | |||| ||||||||||||||||    
T  54539916 cacacgtggcatgccacgtatgctttgaccagtcaaaattggcaaaaaggatcaaagttgcaaatgagctaaatcttaggggatcaaaattgtagttttt 54539817  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    |||||||| || | ||||||  |||||||| |||||||   | |||||||||||||||    
T  54539816 gtatttagggggttaaaattgcaagtttttgaaagttaagggtggaaaagtgcacttt 54539759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 797 - 881
Target Start/End: Complemental strand, 54301172 - 54301088
Alignment:
Q  797 cactgttttgtgtatactactaagtattcttctattctgtcttgtgtagaccattctattactactatcatcaccaccttctttt 881  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||| ||||    
T  54301172 cactgttttgtgtatactactaagtattcttctattctgtcttgtgtagaccattctattccaattatcatcaccagcttttttt 54301088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 8456639 - 8456482
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagtt-aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttt 272  Q
    |||||||| |||| |||| |||| ||||| || | ||||||| | |||||||||||| |||||| |||||||||||| | ||| ||||||||||||||||    
T  8456639 cacacgtggcatgccacgcaggcgttgactaggtcaaaattgactaaaaggatcaaatttgcaatgaggctaaatcttagggggccaaaattgtagtttt 8456540  T
Q  273 tgtatttagaggatcaaaattataagtttttaaaagttagggg--aaaagtgcacttt 328  Q
    ||||||||| ||| |||||||  |||||||| ||| |||||||  |||||||||||||    
T  8456539 tgtatttaggggaccaaaattgcaagtttttgaaaattagggggaaaaagtgcacttt 8456482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 7267804 - 7267648
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || || ||| ||||||||| || ||||||| | |||||||| |||||||||| |||||||||||| | ||| ||||||||||||||| |    
T  7267804 cacacgtggcgtgccatgtatgcattgaccggtcaaaattgaccaaaaggattaaagttgcaatgaggctaaatcttagggggccaaaattgtagtttct 7267705  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    ||| |||| ||  |||||||  |||||||| |||||||  |||||||||||||||||    
T  7267704 gtacttagggggccaaaattgcaagtttttgaaagttaagggggaaaagtgcacttt 7267648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 188 - 328
Target Start/End: Complemental strand, 49398273 - 49398131
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || || ||||| |||||||||||||||||||||   ||||||||| ||| | ||||||||||| |||||||   ||||  | |    
T  49398273 cacgtaggcattgaccggtcaacattggtaaaaaggatcaaagttgcaaatgagctaaatcttaagaggccaaaattgtaatttttgttcatagaacacc 49398174  T
Q  288 aaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    ||||| |||| ||||||||| |||  |||||||||||||||||    
T  49398173 aaaataataattttttaaaacttaagggggaaaagtgcacttt 49398131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 4271579 - 4271464
Alignment:
Q  196 cattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattat 295  Q
    |||||||| || ||||||| ||||||||||||||||||||||  |||||||||| |||   | ||||||||||||||| ||||||   |||||||||||     
T  4271579 cattgaccggtcaaaattgacaaaaaggatcaaagttgcaaatgggctaaatcttaagatgctaaaattgtagtttttatatttaagagatcaaaattac 4271480  T
Q  296 aagtttttaaaagtta 311  Q
    || ||||| |||||||    
T  4271479 aaatttttgaaagtta 4271464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 22776752 - 22776909
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||| || |||||||| |||| ||| ||||  ||||||| |||||| ||| | ||| |||||||||||||||||    
T  22776752 cacacgtggcatgccacgtaggcattgaccggtcaaaattgggaaaatggaccaaatatgcaaaggggctaattcttagggggccaaaattgtagttttt 22776851  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagg---ggaaaagtgcacttt 328  Q
    |||  ||| ||  |||||||  || ||| | |||||||||   |||||||||||||||    
T  22776852 gtacatagggggccaaaattgcaactttctgaaagttaggggtggaaaagtgcacttt 22776909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 49216408 - 49216251
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||||||| ||||||| |||||| | || ||||||||| |||| |||||||| ||||||   ||||||||| |||||  || |||||||||||||    
T  49216408 cacacgtgacatgccacgtagacattgatcggtcaaaattggccaaaatgatcaaagatgcaaatgagctaaatcttaaggggacataattgtagttttt 49216309  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagg---ggaaaagtgcacttt 328  Q
    |||  ||| || ||||||||  || ||||| ||| |||||   |||||||||||||||    
T  49216308 gtacatagggggtcaaaattgcaactttttgaaacttaggcgtggaaaagtgcacttt 49216251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 19985010 - 19984853
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||| ||| |||| |||||||||||||||  || ||||||| | ||||||| ||||| ||||||| || ||||||| || ||  ||||||||||||||||    
T  19985010 cacatgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagttttt 19984911  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    |||  ||| ||  |||||||  |||||||| ||| |||   |||||||||||||||||    
T  19984910 gtacatagggggccaaaattgcaagtttttgaaacttagggggggaaaagtgcacttt 19984853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 311
Target Start/End: Original strand, 55191969 - 55192072
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| |||||| ||||||| |||||||| || ||| |||  |||| |||||||||||||||||||| |||||||  |||||||  |||||||| |||    
T  55191969 aaaattgacaaaaatgatcaaaattgcaaaggggttaattcttgaggggccaaaattgtagtttttgtacttagagggccaaaattgcaagtttttgaaa 55192068  T
Q  308 gtta 311  Q
    ||||    
T  55192069 gtta 55192072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 708 - 747
Target Start/End: Complemental strand, 54301261 - 54301222
Alignment:
Q  708 caccctgtcaatcatcatcatcaacaacaaccataattga 747  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  54301261 caccctgtcaatcatcatcatcaacaacaaccataattga 54301222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 328
Target Start/End: Complemental strand, 29931330 - 29931230
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagg---ggaaaagtgcactt 327  Q
    |||||||| || ||||||| | ||| ||||||||||||||||||||||||| ||   ||||||  |||||||| |||||||||   ||||||||||||||    
T  29931330 ttgcaaaggggttaaatcttagggggccaaaattgtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcactt 29931231  T
Q  328 t 328  Q
    |    
T  29931230 t 29931230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 328
Target Start/End: Complemental strand, 29980484 - 29980384
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagg---ggaaaagtgcactt 327  Q
    |||||||| || ||||||| | ||| ||||||||||||||||||||||||| ||   ||||||  |||||||| |||||||||   ||||||||||||||    
T  29980484 ttgcaaaggggttaaatcttagggggccaaaattgtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcactt 29980385  T
Q  328 t 328  Q
    |    
T  29980384 t 29980384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 534626 - 534503
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||| ||| ||||| |||||| ||||||||||| | ||| ||||||||||||||||||||  |||  | ||||||||  |||||||| | |    
T  534626 aaaattggccaaatggaccaaagatgcaaataggctaaatcttagggggccaaaattgtagtttttgtacataggaggtcaaaattgcaagtttttgaga 534527  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   ||| |||||||||||||    
T  534526 gttagaggggaaaaagtgcacttt 534503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 6249725 - 6249633
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    |||||||||||| |||||| ||| |||||||| ||||||  |||||||||||||||||| |||  |||| ||||||  |||||||| |||||||    
T  6249725 aaaaggatcaaatttgcaatgagactaaatcttaagggat-aaaattgtagtttttgtacttaagggattaaaattgcaagtttttgaaagtta 6249633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 7758529 - 7758406
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| | ||||| || ||||||| | ||| | |||||||||||||||||| |||| || ||||||||  |||||||| |||    
T  7758529 aaaattgaccaaaaggaccaaagatacaaaggggttaaatcttagggggcaaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaa 7758430  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   ||| |||||||||||||    
T  7758429 gttaagggggaaaaagtgcacttt 7758406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 275
Target Start/End: Complemental strand, 10457701 - 10457600
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||  ||| ||||||||||||||||||| |||||||| |||||||| ||||  | |||| || |||| ||  | ||| |||||||||||||||||    
T  10457701 cacacgtggaatgccacgtaggcattgaccagtcaaaattgggaaaaaggaccaaatatacaaatagactaattcctagggggccaaaattgtagttttt 10457602  T
Q  274 gt 275  Q
    ||    
T  10457601 gt 10457600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 12700300 - 12700179
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||| | |||||||||  | |||  ||||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  12700300 aaaattgaccaaaaggaccaaagatgcaatgtggctaaatcatagggggtcaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 12700201  T
Q  308 gtta-ggggaaaagtgcacttt 328  Q
    |||| |||| ||||||||||||    
T  12700200 gttaggggggaaagtgcacttt 12700179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 22775907 - 22775836
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaa 245  Q
    ||||||| ||||| |||||||||||||||| || |||||||| |||||||| ||||  ||||||| ||||||    
T  22775907 cacacgtaacatgccacgtaggcattgaccggtcaaaattgggaaaaaggaccaaatctgcaaaggggctaa 22775836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 29932696 - 29932795
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcactt 327  Q
    |||||||| | |||||||| |||||  ||||||||||||||||||| |||| ||  |||||||  |||||||| |||||||   ||||||||||||||||    
T  29932696 ttgcaaagggactaaatcttaaggggtcaaaattgtagtttttgtacttag-gggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactt 29932794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 29981850 - 29981949
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcactt 327  Q
    |||||||| | |||||||| |||||  ||||||||||||||||||| |||| ||  |||||||  |||||||| |||||||   ||||||||||||||||    
T  29981850 ttgcaaagggactaaatcttaaggggtcaaaattgtagtttttgtacttag-gggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactt 29981948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 31645134 - 31645000
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||||||| ||| ||| | |||||| || ||||||||  ||||||| ||||| ||||||  |||||||||| | | |   |||||||||||||||    
T  31645134 cacacgtgacatgacacatagacgttgaccggtcaaaattggtcaaaaggaccaaagatgcaaatgggctaaatcttaggaggttaaaattgtagttttt 31645035  T
Q  274 gtatttagaggatcaaaattataagtttttaaaag 308  Q
    | | |||| ||  ||||||| ||||||||| ||||    
T  31645034 gcacttagggggccaaaattgtaagtttttgaaag 31645000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 7268767 - 7268923
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||| ||||||||| || |||||||   |||||||| ||| |||||| | | |||||||| | | | ||||||||||||||| |    
T  7268767 cacacgtggcgtgccacgtaagcattgaccggtcaaaattgatcaaaaggattaaaattgcaatgggactaaatcttaggaggccaaaattgtagtttct 7268866  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
     || ||||  |  |||||||  |||||||| |||||||  |||||||||||||||||    
T  7268867 atacttaggaggccaaaattgcaagtttttgaaagttaggggggaaaagtgcacttt 7268923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 12703492 - 12703596
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--aggggaaaagtgc 323  Q
    ||||| ||||| | |||||||||  | ||| |||||||||||||||||||| |||| ||  |||||||| || ||||| ||||||  |||| ||||||||    
T  12703492 caaagatgcaatggggctaaatcatagggggccaaaattgtagtttttgtacttagggggccaaaattacaaatttttgaaagttagagggaaaaagtgc 12703591  T
Q  324 acttt 328  Q
    |||||    
T  12703592 acttt 12703596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 34019119 - 34019240
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||   ||||||| | | ||||||||||||||||| ||||||  ||| || ||||||||  |||||||| |||    
T  34019119 aaaattgaccaaaaggaccaaagatgcaaatgagctaaattttaggggaccaaaattgtagtgtttgtacctagggggtcaaaattgcaagtttttgaaa 34019218  T
Q  308 gtt-aggggaaaagtgcacttt 328  Q
    ||| ||||||||| || |||||    
T  34019219 gttaaggggaaaaatgtacttt 34019240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 46721218 - 46721317
Alignment:
Q  232 tgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggg---gaaaagtgcacttt 328  Q
    ||||||| |||||||||| | ||||| ||||||||||||||||||  ||| || | |||||   || ||||||||||||||||   ||||||||||||||    
T  46721218 tgcaaaggggctaaatcttaggggactaaaattgtagtttttgtacatagggggttaaaatcgcaactttttaaaagttagggggagaaaagtgcacttt 46721317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 47610554 - 47610677
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| |||    
T  47610554 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaa 47610653  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  47610654 gttagagggggaaaagtgcacttt 47610677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 328
Target Start/End: Complemental strand, 24516554 - 24516464
Alignment:
Q  241 gctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg---aaaagtgcacttt 328  Q
    ||||||||| ||||| ||||||||||||||||| || |||| |   |||||||  |||||||| |||||||||||   |||||||||||||    
T  24516554 gctaaatcttaaggggccaaaattgtagtttttatacttagggtgccaaaattgcaagttttttaaagttaggggggaaaaagtgcacttt 24516464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 47609824 - 47609717
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||    ||||||| ||||| ||| |||| || ||||||||  |||||||| |||    
T  47609824 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggttaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaa 47609725  T
Q  308 gttagggg 315  Q
    ||||||||    
T  47609724 gttagggg 47609717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 47614294 - 47614189
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtg 322  Q
    ||||| |||||||||||||||||| | ||| |||||||||| |||||  || |||| ||  |||||||  |||||||| |||||||   ||| |||||||    
T  47614294 caaagatgcaaagaggctaaatcttagggggccaaaattgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagaggggaaaaagtg 47614195  T
Q  323 cacttt 328  Q
    ||||||    
T  47614194 cacttt 47614189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 53614897 - 53614838
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggga 316  Q
    ||||||||||||||||| ||| |||||||  |||||| ||||||||| ||||||| ||||    
T  53614897 ccaaaattgtagtttttatatatagaggactaaaattgtaagtttttgaaagttaaggga 53614838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 6170387 - 6170296
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    |||| ||||||| |||||| ||| |||||||| |||||   ||||||||| |||||||| |||  |||||||||||  |||||||| |||||||    
T  6170387 aaaatgatcaaatttgcaatgagactaaatcttaagggt--aaaattgtaatttttgtacttaagggatcaaaattgcaagtttttgaaagtta 6170296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 51038807 - 51038887
Alignment:
Q  251 aagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    |||||||||||||||||||||||||   ||| || ||||||||  || |||||||||||||   | |||||||||||||||    
T  51038807 aagggaccaaaattgtagtttttgttcatagggggtcaaaattgcaactttttaaaagttaagggtggaaaagtgcacttt 51038887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 315
Target Start/End: Original strand, 51470439 - 51470536
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||||||| ||||||||||| |  ||||||||| | |||  | ||||||| ||||| ||| |||| ||||| |||||  |||||||| |||||||||||    
T  51470439 aaaaggaccaaagttgcaatggagctaaatcttaggggtgctaaattgtggttttggtacttaggggatctaaattgcaagtttttgaaagttagggg 51470536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 6e-46; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 174 - 327
Target Start/End: Complemental strand, 31599950 - 31599794
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  31599950 cacacgtggcatgccacgtaggcattgaccggtcaaaattggcaaaaaggatcaaagttgcaaaggggctaaatcttaggggaccaaaattgtagttttt 31599851  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagggg---aaaagtgcactt 327  Q
    ||| |||| || ||||||||  ||||||||||||||||||||   ||||||||||||    
T  31599850 gtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagtgcactt 31599794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 31600925 - 31601082
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| ||| |||||||||||| || ||||||| ||||||||||||||||||||||  |||||||||| |||||  ||||||||||||||||    
T  31600925 cacacgtggcatgccacataggcattgaccggtcaaaattgacaaaaaggatcaaagttgcaaatgggctaaatcttaaggggtcaaaattgtagttttt 31601024  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    ||| |||| || ||||||||  ||||||||||||||||   ||| |||||||||||||    
T  31601025 gtacttagggggtcaaaattgcaagtttttaaaagttagaggggaaaaagtgcacttt 31601082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 35934503 - 35934348
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||||||| |||||||||||||||  || ||||||| | ||||| || |||||||||| | |||||||||| ||||| |||||||| || ||| |    
T  35934503 cacacgtgacatgccacgtaggcattgactggtcaaaattgaccaaaagaattaaagttgcaatggggctaaatcttaaggggccaaaattataatttct 35934404  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta-ggggaaaagtgcacttt 328  Q
     || |||| ||| |||||||| |||||||| ||||||| |||||||||||||||||    
T  35934403 ttacttaggggaccaaaattacaagtttttgaaagttagggggaaaagtgcacttt 35934348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 188 - 311
Target Start/End: Original strand, 52491561 - 52491684
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | |||||||| |||||||||| | |||||||| | | ||| ||||||||||||||| ||||||||||||| |    
T  52491561 cacgtaggcattgacctgtcaaaattgaccaaaaggattaaagttgcaatggggctaaattttagggggccaaaattgtagtttctgtatttagaggacc 52491660  T
Q  288 aaaattataagtttttaaaagtta 311  Q
    ||||||  |||||||| |||||||    
T  52491661 aaaattgcaagtttttgaaagtta 52491684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 31600122 - 31600060
Alignment:
Q  8 ggatggtggtactggtgatgatgaatatgggggaagatgatatgtgcctttccttcttcatct 70  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31600122 ggatggtggtactggtgatgatgaatctgggggaagatgatatgtgcctttccttcttcatct 31600060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 175 - 328
Target Start/End: Original strand, 35935474 - 35935630
Alignment:
Q  175 acacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttg 274  Q
    ||||||| | || ||| |||||||||||| || ||||||||| |||||||| |||||||||| |||||||||||| | ||| ||||||||||||||| ||    
T  35935474 acacgtggcgtgccacataggcattgaccggtcaaaattggccaaaaggattaaagttgcaatgaggctaaatcttagggggccaaaattgtagtttatg 35935573  T
Q  275 tatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    || |||| ||   ||||||  || |||||||||||||   |||| ||||||||||||    
T  35935574 tacttagggggctaaaattgcaaatttttaaaagttaagggggggaaagtgcacttt 35935630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 174 - 315
Target Start/End: Complemental strand, 21178157 - 21178016
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || ||| ||||||||||||||| |||||||||||||| |||||||||||||||  |||||||| | | |||  ||||||||||||||||    
T  21178157 cacacgtggcgtgccacataggcattgaccagtcaaaattggcaaaaatgatcaaagttgcaaaagggctaaattttagggggtcaaaattgtagttttt 21178058  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||   ||| |||||||||||  || ||| | |||||||||||    
T  21178057 gttcataggggatcaaaattgcaactttatgaaagttagggg 21178016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 188 - 328
Target Start/End: Complemental strand, 8757820 - 8757679
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | |||||||| ||| |||||| | |||||||||| ||||| ||||||||||||||| |||| |||| ||       
T  8757820 cacgtaggcattgacc-gtcaaaattgaccaaaaggattaaaattgcaatggggctaaatcttaagggtccaaaattgtagtttctgtacttagggggct 8757722  T
Q  288 aaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    |||||| ||||||||| |||||||  ||| |||||||||||||    
T  8757721 aaaattgtaagtttttgaaagttaaggggaaaaagtgcacttt 8757679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 10448200 - 10448302
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||  || ||||||||| ||||||| ||||| ||||||| ||||| |||| |  || |||||||||||||||||    
T  10448200 cacacgtggcatgccacgtaggcattgactggtcaaaattggccaaaaggaccaaagatgcaaaggggctatatcttagagggccaaaattgtagttttt 10448299  T
Q  274 gta 276  Q
    |||    
T  10448300 gta 10448302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 26421562 - 26421718
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagtt-aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttt 272  Q
    |||||||| |||| |||| |||| ||||| | || ||||||| | |||| ||||||| |||||| | |||||||||| |||||  |||||||||||||||    
T  26421562 cacacgtggcatgccacgcaggcgttgactattttaaaattgactaaaatgatcaaatttgcaatg-ggctaaatcttaaggggtcaaaattgtagtttt 26421660  T
Q  273 tgtatttagaggatcaaaattataagtttttaaaagtt--aggggaaaagtgcacttt 328  Q
    |||| ||||  | ||||||||  |||||||| ||||||  ||||||||||||||||||    
T  26421661 tgtacttaggaggtcaaaattgcaagtttttgaaagttagaggggaaaagtgcacttt 26421718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 1835076 - 1835199
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| ||||| ||||||| |||||||||| | |||  |||||||||||||||  || |||| || ||||||||  |||||||| |||    
T  1835076 aaaattggctaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaa 1835175  T
Q  308 gttagg---ggaaaagtgcacttt 328  Q
    ||||||   |||||||||||||||    
T  1835176 gttagggatggaaaagtgcacttt 1835199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 19750559 - 19750671
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggg 315  Q
    |||||||||||| |||||| | |||||||||| | |||   |||||||||||||||||| |||| ||  |||||||  ||||||||||||||||  ||||    
T  19750559 aaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttagggggg 19750658  T
Q  316 aaaagtgcacttt 328  Q
    |||||||||||||    
T  19750659 aaaagtgcacttt 19750671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 19789247 - 19789135
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggg 315  Q
    |||||||||||| |||||| | |||||||||| | |||   |||||||||||||||||| |||| ||  |||||||  ||||||||||||||||  ||||    
T  19789247 aaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttagggggg 19789148  T
Q  316 aaaagtgcacttt 328  Q
    |||||||||||||    
T  19789147 aaaagtgcacttt 19789135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 33310086 - 33310183
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc-aaaattataagtttttaaaagttaggggaaaagtgcacttt 328  Q
    ||||||||||||||||||  |  || |||||||| |||||||||||||||| ||| | ||||||| ||||||||||||||||||  |||||||||||||    
T  33310086 ttgcaaagaggctaaatcatagagggccaaaattatagtttttgtatttag-ggagctaaaattacaagtttttaaaagttaggaaaaaagtgcacttt 33310183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 1290172 - 1290295
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| || ||||||| | ||| | |||||||||||||||||| |||||||  |||||||  ||| |||| |||    
T  1290172 aaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagggggctaaaattgtagtttttgtacttagagggccaaaattgcaagattttgaaa 1290271  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  1290272 gttaaggggggaaaagtgcacttt 1290295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 324
Target Start/End: Original strand, 8758791 - 8758930
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||| |  | ||||||| | |||||||| ||| |||||| |  ||||||||| ||||| ||||||||||||||| |||| |||| ||  |    
T  8758791 cacgtaggcattgatcgatcaaaattgaccaaaaggattaaaattgcaatggagctaaatcttaaggggccaaaattgtagtttctgtacttagggggcc 8758890  T
Q  288 aaaattataagtttttaaaagtta---ggggaaaagtgca 324  Q
    ||||||  |||||||| |||||||   |||||||||||||    
T  8758891 aaaattgcaagtttttgaaagttaaggggggaaaagtgca 8758930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 328
Target Start/End: Complemental strand, 8155845 - 8155742
Alignment:
Q  227 aaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc-aaaattataagtttttaaaagtta-ggggaaaagtgca 324  Q
    |||| ||||||| |||||||||| | ||| |||||||||||||||||| | |||| ||| | ||||||  |||||||| ||||||| |||||||||||||    
T  8155845 aaagatgcaaagcggctaaatcttagggggccaaaattgtagtttttgaacttaggggagctaaaattgcaagtttttgaaagttagggggaaaagtgca 8155746  T
Q  325 cttt 328  Q
    ||||    
T  8155745 cttt 8155742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 13509333 - 13509440
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| ||||| ||||||| |||||||||| | |||| |||||||||||||||  || || | ||  |||||||  || |||||||||    
T  13509333 aaaattggccaaaaggagcaaaggtgcaaaggggctaaatcttaggggatcaaaattgtagttttcatacttggggggccaaaattgcaattttttaaaa 13509432  T
Q  308 gttagggg 315  Q
    ||||||||    
T  13509433 gttagggg 13509440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 25685051 - 25684938
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggg 314  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| ||||||| ||||||||  |||||||| |||||||   |||    
T  25685051 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagagggtcaaaattgcaagtttttgaaagttagggggg 25684952  T
Q  315 gaaaagtgcacttt 328  Q
    ||||||||||||||    
T  25684951 gaaaagtgcacttt 25684938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 48780365 - 48780252
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggg 314  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| || ||||||||  ||||||||||||||||   |||    
T  48780365 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggtcaaaattgcaagtttttaaaagttagggggg 48780266  T
Q  315 gaaaagtgcacttt 328  Q
    ||||||||||||||    
T  48780265 gaaaagtgcacttt 48780252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 1834247 - 1834123
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaaggga-ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaa 306  Q
    ||||||| | ||||||| ||||| ||||||  |||||||||| | |||  ||||||||||||||||| ||  ||| || |||||||| ||||||||| ||    
T  1834247 aaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttaggggggccaaaattgtagtttttatacatagggggtcaaaattgtaagttttttaa 1834148  T
Q  307 agtta---ggggaaaagtgcacttt 328  Q
    |||||   |||||||||||||||||    
T  1834147 agttagagggggaaaagtgcacttt 1834123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 10447168 - 10447066
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||||||||||||  ||||||||| || ||||||| ||||| ||||||| |||||||||| | |||   |||||||| ||||||    
T  10447168 cacacgtggcgtgccacgtaggcattgactggttaaaattagccaaaaggaccaaagatgcaaaggggctaaatcttaggggggtaaaattgtggttttt 10447069  T
Q  274 gta 276  Q
    |||    
T  10447068 gta 10447066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 1289224 - 1289101
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||| | || ||||||| ||| | | ||||||||||||||| || ||||||||||||||||| || | ||| |||    
T  1289224 aaaattgaccaaaaggaccaaagatgcaagggggttaaatcttaagaggctaaaattgtagtttttatacttagaggatcaaaattacaaatatttgaaa 1289125  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||| ||||||    
T  1289124 gttaaggggggaaaagttcacttt 1289101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 313
Target Start/End: Original strand, 37728539 - 37728644
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| |||||||| ||||||||| || ||  |||||||||||||||||||  |||  |  |||||||  || |||||||||    
T  37728539 aaaattgactaaaaggatcaaagatgcaaagaagctaaatcttaaagggtcaaaattgtagtttttgtacataggaggccaaaattgcaactttttaaaa 37728638  T
Q  308 gttagg 313  Q
    ||||||    
T  37728639 gttagg 37728644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 5525486 - 5525379
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| || ||||||||  |||||||| |||    
T  5525486 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaa 5525387  T
Q  308 gttagggg 315  Q
    ||||||||    
T  5525386 gttagggg 5525379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 10470663 - 10470550
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggg 314  Q
    ||||||| ||||||||||| | |||||||||| | |||  | |||||||  |||| ||| ||||||| ||||||||  |||||||| |||||||   |||    
T  10470663 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtgattttggtacttagagggtcaaaattgcaagtttttgaaagttaaggggg 10470564  T
Q  315 gaaaagtgcacttt 328  Q
    ||||||||||||||    
T  10470563 gaaaagtgcacttt 10470550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 12129732 - 12129627
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt---aggggaaaagtg 322  Q
    ||||| ||||||  |||||||||| |||||  ||||||||||||||||||| |||  ||  |||||||  |||||||| ||||||   ||||||||||||    
T  12129732 caaagatgcaaatgggctaaatcttaaggggtcaaaattgtagtttttgtacttacggggccaaaattgcaagtttttgaaagttaagaggggaaaagtg 12129633  T
Q  323 cacttt 328  Q
    ||||||    
T  12129632 cacttt 12129627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 17383070 - 17382997
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggg--gaaaagtgcacttt 328  Q
    |||||||||||||||||||| |||  ||| |||||||  |||||||| ||||||||||  ||||||||||||||    
T  17383070 ccaaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaagttaggggagaaaagtgcacttt 17382997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 319
Target Start/End: Complemental strand, 33296353 - 33296239
Alignment:
Q  205 gttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttta 304  Q
    |||||||||| | |||| |||||||| ||||||   |||||||   | |||||||||||| |||||||| || ||||  || |||||||||||||||||     
T  33296353 gttaaaattgaccaaaatgatcaaagatgcaaatgagctaaattataggggaccaaaattatagtttttatacttaggagaccaaaattataagtttttg 33296254  T
Q  305 aaagttaggggaaaa 319  Q
    ||| |||||| ||||    
T  33296253 aaaattagggaaaaa 33296239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 10471362 - 10471485
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| |||    
T  10471362 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaa 10471461  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  10471462 gttaaggggggaaaagtgcacttt 10471485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 25685796 - 25685919
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| |||    
T  25685796 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttagggggtctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaa 25685895  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  25685896 gttagagggggaaaagtgcacttt 25685919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 27257960 - 27258037
Alignment:
Q  234 caaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    ||||| |||||||||| |||||   ||||||| ||||||||||| |||||| ||||||||  || |||||||||||||    
T  27257960 caaaggggctaaatcttaaggggttaaaattggagtttttgtatatagagggtcaaaattgcaactttttaaaagtta 27258037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 49308051 - 49308123
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    ||||||||||||||||||| |||| ||  |||||||  |||||||| |||||||  |||||||||||||||||    
T  49308051 caaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaaagtgcacttt 49308123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 1964440 - 1964538
Alignment:
Q  233 gcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    |||||| || ||| ||| |||||||||||||||||||||||||   ||| ||  ||||||| ||| |||||||||||||   | |||||||||||||||    
T  1964440 gcaaaggggataattcttaagggaccaaaattgtagtttttgttcatagggggccaaaattgtaactttttaaaagttaagggtggaaaagtgcacttt 1964538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 17388234 - 17388307
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    ||||||||||||||| |||| |||  ||| |||||||  |||||||| |||||||  |||||||||||||||||    
T  17388234 ccaaaattgtagtttatgtacttaagggaccaaaattgcaagtttttgaaagttaggggggaaaagtgcacttt 17388307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 55602457 - 55602380
Alignment:
Q  253 gggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--aggggaaaagtgcacttt 328  Q
    ||||| ||||||||||||||| ||| |||||||  ||||||  |||||||| ||||||  ||||||||| ||||||||    
T  55602457 gggactaaaattgtagtttttatatatagaggactaaaattgcaagtttttgaaagttaaaggggaaaaatgcacttt 55602380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 174 - 315
Target Start/End: Original strand, 28539760 - 28539901
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||    
T  28539760 cacacgtggcatgccacgtaggcattgaccggtcaaaattggcaaaaaggatcaaagttgcaaagggactaaatcttaggggaccaaaattgtagttttt 28539859  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||| ||||||| ||||||||  ||||||||||||||||||||    
T  28539860 gtacttagagggtcaaaattgcaagtttttaaaagttagggg 28539901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 174 - 327
Target Start/End: Original strand, 36486428 - 36486584
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||| || ||||||| ||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||    
T  36486428 cacacgtggcatgccacgtaggcattgaccggtcaaaattgacaaaaaggatcaaagttgcaaagggactaaatcttaggggaccaaaattgtagttttt 36486527  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagggg---aaaagtgcactt 327  Q
    ||| |||| || ||||||||  ||||||||||||||||||||   ||||||||||||    
T  36486528 gtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagtgcactt 36486584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 28538837 - 28538680
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| ||| ||| |||||||| || ||||||| ||||||||||||||||||||||| |||||||||| | ||| | |||||||||||||||    
T  28538837 cacacgtggcatgccacatagacattgaccggtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggctaaaattgtagttttt 28538738  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    ||| |||  || ||||||||  |||||||| |||||||   | |||||||||||||||    
T  28538737 gtacttaaggggtcaaaattgcaagtttttgaaagttacgggtggaaaagtgcacttt 28538680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 36485443 - 36485320
Alignment:
Q  192 taggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtattta-gaggatcaaa 290  Q
    |||||||||||| || ||||||| |||||| |||||||||||||||| || ||||||| | ||| |||||||| ||||||||||| ||| |||| |||||    
T  36485443 taggcattgaccggtcaaaattgacaaaaatgatcaaagttgcaaaggggttaaatcttagggggccaaaattatagtttttgtacttaagagg-tcaaa 36485345  T
Q  291 attataagtttttaaaagttagggg 315  Q
    ||| ||||||||| |||||||||||    
T  36485344 attgtaagttttttaaagttagggg 36485320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 1797255 - 1797338
Alignment:
Q  192 taggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgt 275  Q
    |||||||||||| || |||||||  |||| | ||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  1797255 taggcattgaccggtcaaaattgaaaaaaggaatcaaagttgcaaaggggctaaatcttaagggaccaaaattgtagtttttgt 1797338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 40255612 - 40255769
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| || | |||||||||||||||| || |||||||   |||| ||| ||| |||||| | || ||||||| | ||| ||||||||||||||| |    
T  40255612 cacacgtggcacgccacgtaggcattgaccggtcaaaattgatcaaaaagattaaaattgcaatggggttaaatcttagggggccaaaattgtagtttct 40255711  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtt---aggggaaaagtgcacttt 328  Q
    |||||||| || ||||||||  |||||||||||| ||   ||||||||||||||||||    
T  40255712 gtatttagggggtcaaaattgcaagtttttaaaaattaagaggggaaaagtgcacttt 40255769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 28539612 - 28539673
Alignment:
Q  8 ggatggtggtactggtgatgatgaatatgggggaagatgatatgtgcctttccttcttcatct 70  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||    
T  28539612 ggatggtggtactggtgatgatgaatctgggg-aagatgatatgtgcctctccttcttcatct 28539673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 188 - 328
Target Start/End: Original strand, 33160241 - 33160383
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||||| |||||||| |||||||||| | |||||||||| |||||  |||||||||||||| | || |||| ||       
T  33160241 cacgtaggcattgaccggtcaaaattggctaaaaggattaaagttgcaatg-ggctaaatcttaaggggtcaaaattgtagtttctatacttagggggct 33160339  T
Q  288 aaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    ||||||  |||||||| ||| |||   |||||||||||||||||    
T  33160340 aaaattgcaagtttttgaaaattaaggggggaaaagtgcacttt 33160383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 19753038 - 19752916
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||| | |||||||||  | ||| |||||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  19753038 aaaattgaccaaaaggaccaaagatgcaatggggctaaatcatagggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 19752939  T
Q  308 gtta--ggggaaaagtgcacttt 328  Q
    ||||  |||||||||||||||||    
T  19752938 gttaggggggaaaagtgcacttt 19752916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 25523186 - 25523073
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggg 314  Q
    ||||||||||||| ||||||| |||||||||| | |||  ||||||||||||||||||| |||| ||   ||||||  |||||||| |||||||   |||    
T  25523186 aaaaggatcaaagatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggg 25523087  T
Q  315 gaaaagtgcacttt 328  Q
    ||||||||||||||    
T  25523086 gaaaagtgcacttt 25523073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 2686385 - 2686479
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag 312  Q
    ||||||| ||||| ||||| |||||||||||  | |||||||||||| ||||||||||| |||   ||||||||||  |||||||||||||||||    
T  2686385 aaaaggaccaaagatgcaatgaggctaaatcataggggaccaaaattatagtttttgtacttaagagatcaaaattgcaagtttttaaaagttag 2686479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 315
Target Start/End: Original strand, 19754114 - 19754211
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||||||| ||||| ||||| | |||||||||  | ||| ||||||||||||||||||||||||| ||  |||||||  |||||||| |||||||||||    
T  19754114 aaaaggaccaaagatgcaatggggctaaatcatagggggccaaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaagttagggg 19754211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 24333074 - 24332972
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||  || ||||||| | ||||||| ||||| ||||||| || ||||||| |  ||  ||||||||||||||||    
T  24333074 cacacgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagttttt 24332975  T
Q  274 gta 276  Q
    |||    
T  24332974 gta 24332972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 16650829 - 16650952
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||  ||||||| || | ||| | ||||||||||||||| || |||| || ||||||||  ||||||||||||    
T  16650829 aaaattgaccaaaaggaccaaagatgcaaatgggctaaaccttagggggctaaaattgtagtttttatacttagggggtcaaaattgcaagtttttaaaa 16650928  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   | |||||||||||||||    
T  16650929 gttaagggtggaaaagtgcacttt 16650952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 21835157 - 21835045
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggg 315  Q
    ||||||||||||||||||||| || ||||||| | |||  |||||||||||||||||||  ||| || ||||||| | || ||||| ||| ||  |||||    
T  21835157 aaaaggatcaaagttgcaaaggggttaaatcttagggggtcaaaattgtagtttttgtacatagggggtcaaaatcacaactttttcaaacttagagggg 21835058  T
Q  316 aaaagtgcacttt 328  Q
     ||||||||||||    
T  21835057 gaaagtgcacttt 21835045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 2685820 - 2685764
Alignment:
Q  259 aaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||| ||| |||||||    
T  2685820 aaaattgtagtttttgtacttaggggaccaaaattataagtttttgaaaattagggg 2685764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 42195259 - 42195191
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgta 276  Q
    ||||||| | ||||||| ||||| ||||||| |||||||||| | |||||||||||||||| |||||||    
T  42195259 aaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaaattgtagattttgta 42195191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 5778016 - 5777905
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta-gggga 316  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| || ||||||||  |||||||| ||||||| ||||     
T  5778016 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaagttagggggg 5777917  T
Q  317 aaagtgcacttt 328  Q
    ||||||||||||    
T  5777916 aaagtgcacttt 5777905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 42196174 - 42196281
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||  |||||||||| | ||||| |||| |||||||||||||  ||||||  |||| | | || |||||||||    
T  42196174 aaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttaggggactaaaaatgtagtttttgtacatagagggccaaattcacaactttttaaaa 42196273  T
Q  308 gttagggg 315  Q
    ||||||||    
T  42196274 gttagggg 42196281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 5961567 - 5961494
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaat 247  Q
    |||||||| ||||||| |||| |||||||| ||||||| |||  ||||||||||||| ||||||| || |||||    
T  5961567 cacacgtggcatgtcatgtagacattgaccggttaaaaatggtcaaaaggatcaaagatgcaaaggggttaaat 5961494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 36486277 - 36486313
Alignment:
Q  34 atgggggaagatgatatgtgcctttccttcttcatct 70  Q
    ||||||||||||||||||||||| |||||||||||||    
T  36486277 atgggggaagatgatatgtgcctctccttcttcatct 36486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 25055529 - 25055454
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaatt 293  Q
    ||||||| ||||| ||||||  |||||||||| | ||| ||||||||||||||||| ||  ||| |||||||||||    
T  25055529 aaaaggaccaaagatgcaaatgggctaaatcttagggggccaaaattgtagtttttatacataggggatcaaaatt 25055454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 25056385 - 25056478
Alignment:
Q  238 gaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagg---ggaaaagtgcacttt 328  Q
    |||||||||||| | |||  |||||||||||||||  || |||| || ||||||||  |||||||| |||||||||   |||||||||||||||    
T  25056385 gaggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttaggagtggaaaagtgcacttt 25056478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 316
Target Start/End: Complemental strand, 1015645 - 1015503
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||| ||| |||||||||||||||||||   || ||||||||  ||||||| ||||  ||||||| | |||| ||| | |||   |||||||||| ||||    
T  1015645 cacatgtggcatgtcacgtaggcattgattggtcaaaattggggaaaaggaccaaatatgcaaagggactaattcttagggggttaaaattgtaggtttt 1015546  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagggga 316  Q
    |||   || ||  ||||||| ||| ||||||||||||||||||    
T  1015545 gtacacagggggccaaaattgtaactttttaaaagttagggga 1015503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 18154570 - 18154509
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt-aggggaaaa 319  Q
    ||||||||||||||||||| |||| || |||||||| ||||||||| |||||| |||||||||    
T  18154570 caaaattgtagtttttgtacttag-gggtcaaaattgtaagtttttgaaagttaaggggaaaa 18154509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 25524150 - 25524225
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg----aaaagtgcacttt 328  Q
    |||||||||||||||||||| |||| ||  |||||||| || ||||||||| |||||||    |||||||||||||    
T  25524150 ccaaaattgtagtttttgtacttagggggccaaaattacaaatttttaaaaattaggggggggaaaagtgcacttt 25524225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 33158188 - 33158118
Alignment:
Q  245 aatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||||| |||||  ||||||||||||||||||| |||| |  ||||||||  |||||||| |||||||||||    
T  33158188 aatcttaaggggtcaaaattgtagtttttgtacttagggtgtcaaaattgcaagtttttgaaagttagggg 33158118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 1016887 - 1016944
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    |||||||||||||||||||  |||| || |||||||| || ||||||||| |||||||    
T  1016887 caaaattgtagtttttgtacatagaagaccaaaattacaattttttaaaaattagggg 1016944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 5778810 - 5778933
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||   ||||||  |||||||| |||    
T  5778810 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggcaaaaattgcaagtttttgaaa 5778909  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  5778910 gttagagggggaaaagtgcacttt 5778933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 22940597 - 22940719
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||||||| |||| || |||| |||||||| | | ||| | ||||||||| |||||||| |||| ||  |||||||  |||||||| |||    
T  22940597 aaaattgaccaaaaggataaaagatgaaaaggggctaaattttaggggtc-aaaattgtaatttttgtacttagggggccaaaattgcaagtttttgaaa 22940695  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  22940696 gttaaggggggaaaagtgcacttt 22940719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 189 - 328
Target Start/End: Original strand, 3263 - 3404
Alignment:
Q  189 acgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatca 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||||||  ||  || |||    
T  3263 acgtaggcattgaccagtaaaaattggcaaaaaggatcaaagttgcaaaggggctaaatcttaggggaccaaaattatagtttttgtacctatggggtca 3362  T
Q  289 aaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    ||||| ||||||||| ||||| |  |||||||||||||||||    
T  3363 aaattgtaagtttttgaaagtaaggggggaaaagtgcacttt 3404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 3089 - 3152
Alignment:
Q  8 ggatggtggtactggtgatgatgaatatgggg-gaagatgatatgtgcctttccttcttcatct 70  Q
    |||||||||| ||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  3089 ggatggtggtcctggtaatgatgaatctggggagaagatgatatgtgcctctccttcttcatct 3152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 188 - 328
Target Start/End: Original strand, 16704451 - 16704594
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    ||||||||||||||||| | ||||||| |||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||| |||| || ||    
T  16704451 cacgtaggcattgaccaatcaaaattgacaaaaaggatcatagttgcaaagaggctaaatcttaaaggatcaaaattgtagtttttgtacttagggggtc 16704550  T
Q  288 aaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    ||||||  |||||||| |||||||   | |||||||||||||||    
T  16704551 aaaattgcaagtttttgaaagttaagggaggaaaagtgcacttt 16704594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 188 - 328
Target Start/End: Original strand, 1829557 - 1829700
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | |||| || ||||| ||||||| |||||||||| | ||| ||||||||||||||||| || |||| || ||    
T  1829557 cacgtaggcattgaccggtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacttagggggtc 1829656  T
Q  288 aaaattataagtttttaaaagttagggg---aaaagtgcacttt 328  Q
    ||||||  ||||||||||||||||||||   |||||||||||||    
T  1829657 aaaattgcaagtttttaaaagttagggggaaaaaagtgcacttt 1829700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 174 - 315
Target Start/End: Original strand, 10785853 - 10785994
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || || ||| |||||||| ||| |||||||| |||||||||||||||||||||| |||||||||| |||||   |||||||||||||||    
T  10785853 cacacgtggcgtgccatgtatgcattgactagtcaaaattggtaaaaaggatcaaagttgcaaaggggctaaatcttaaggggttaaaattgtagttttt 10785952  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||| |||| || | ||||||  || |||||||||||||||||    
T  10785953 gtacttagggggttaaaattgcaaatttttaaaagttagggg 10785994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 188 - 312
Target Start/End: Complemental strand, 26574765 - 26574642
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||| | | || ||||||| |||||| |||||||||||||||| |||||||||| |||||| ||||| ||||||||||||| ||||||| ||    
T  26574765 cacgtaggcattaatcggtcaaaattgacaaaaaagatcaaagttgcaaaggggctaaatcttaagggatcaaaa-tgtagtttttgtacttagaggttc 26574667  T
Q  288 aaaattataagtttttaaaagttag 312  Q
    ||||||  |||||||| ||||||||    
T  26574666 aaaattgcaagtttttgaaagttag 26574642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 26575003 - 26575149
Alignment:
Q  183 catgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttaga 282  Q
    |||| ||||||| |||||||| || |||||||||||||||||||||||||||||||  | ||||||| | ||| |||||||||||||||||||| |||      
T  26575003 catgccacgtagacattgaccggtcaaaattggcaaaaaggatcaaagttgcaaaggagttaaatcttagggggccaaaattgtagtttttgtacttaag 26575102  T
Q  283 ggatcaaaattataagtttttaaaagttag-gggaaaagtgcacttt 328  Q
    || | ||||||  |||||||| |||||||| | | ||||||||||||    
T  26575103 gggttaaaattgcaagtttttgaaagttagagaggaaagtgcacttt 26575149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 5658883 - 5658760
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||  ||| | |  |||||||||| |||||||||    
T  5658883 aaaattgaccaaaaggatcaaagttgcaaatgggctaaatcttaagggatcaaaattgtagtttttgtacatagggaactaaaattataactttttaaaa 5658784  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
     |||   |||||||| ||||||||    
T  5658783 cttaaggggggaaaaatgcacttt 5658760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 10784711 - 10784612
Alignment:
Q  217 aaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggga 316  Q
    |||||||||||||||||||||| ||||||||||   ||| ||||||||||||||||| || |||| || | ||||||  |||||||||||||||| ||||    
T  10784711 aaaaaggatcaaagttgcaaaggggctaaatctttgggggccaaaattgtagtttttatacttagggggttaaaattgcaagtttttaaaagttaaggga 10784612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 17496915 - 17496817
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaaggga-ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||||||| ||||| |||||||||| ||||||| | |||  ||||||||| |||||||||| ||||||| | |||||| ||||||||| |||||||||||    
T  17496915 aaaaggaccaaagatgcaaagaggttaaatcttaggggggccaaaattgcagtttttgtacttagagggttaaaattgtaagtttttgaaagttagggg 17496817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 16703685 - 16703565
Alignment:
Q  217 aaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta-gggg 315  Q
    |||||||||||||||||  ||| || ||||| | | ||| | ||||||||||||||||||||||  |||||||||||  |||||||| |||| || ||||    
T  16703685 aaaaaggatcaaagttgggaaggggttaaattttagggggctaaaattgtagtttttgtattta-tggatcaaaattgcaagtttttgaaagataggggg 16703587  T
Q  316 aaaagtgcactttcgcaaaata 337  Q
    ||||||||||||| || |||||    
T  16703586 aaaagtgcactttagccaaata 16703565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 3721739 - 3721616
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| |||||  | ||||| | ||||| ||| |||| || ||||||||  |||||||| |||    
T  3721739 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaaggggtctaaattatggttttggtacttagggggtcaaaattgcaagtttttgaaa 3721640  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  3721639 gttagagggggaaaagtgcacttt 3721616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 7316268 - 7316391
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| || || ||||||| |||||||||| ||||| |||||||||| ||||   ||||||| ||  |||||||  |||||||| |||    
T  7316268 aaaattgaccaaaaggaccatagatgcaaaggggctaaatcttaaggggccaaaattgtggtttcaatatttagggggccaaaattgcaagtttttgaaa 7316367  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  7316368 gttaaggggggaaaagtgcacttt 7316391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 29473238 - 29473174
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaag 238  Q
    |||| ||| |||| |||||||||||||||| || ||||||| |||||||||||||| ||||||||    
T  29473238 cacatgtggcatgccacgtaggcattgaccggtaaaaattgacaaaaaggatcaaaattgcaaag 29473174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 6842257 - 6842323
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttg 274  Q
    ||||||||| ||||||||||||| |||||| || |||||| | |||| || ||||||||||||||||    
T  6842257 aaaattggccaaaaggatcaaagatgcaaacagactaaattttaaggaactaaaattgtagtttttg 6842323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 8659392 - 8659269
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| |||    
T  8659392 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaa 8659293  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  8659292 gttagagggggaaaagtgcacttt 8659269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 8660178 - 8660300
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||||||||||||||| |  ||||||||| | |||  | ||||||| ||||| ||| |||| || ||||||||  |||||||| |||    
T  8660178 aaaattggtcaaaaggatcaaagttgcaatggagctaaatcttaggggggctaaattgtggttttggtacttag-gggtcaaaattgcaagtttttgaaa 8660276  T
Q  308 gtt---aggggaaaagtgcacttt 328  Q
    |||   ||||||||||||||||||    
T  8660277 gttaggaggggaaaagtgcacttt 8660300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 14822521 - 14822424
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttt 271  Q
    |||||||| | || |||||| ||||||||| || ||||| |   |||||||| |||||||||| ||| |||||||| | ||| |||||||||||||||    
T  14822521 cacacgtggcgtgccacgtaagcattgaccggtcaaaatagattaaaaggattaaagttgcaatgagactaaatcttagggggccaaaattgtagttt 14822424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 27437955 - 27437890
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||| ||||||| |||||||||||||  ||||||||| | |||  ||||||||||||||||    
T  27437955 aaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagttttt 27437890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 34834553 - 34834676
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| |||||  || ||||  ||||||||||  |||||||| |||    
T  34834553 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttgatacttaggagatcaaaattgcaagtttttgaaa 34834652  T
Q  308 gttag---gggaaaagtgcacttt 328  Q
    |||||   ||||||||||||||||    
T  34834653 gttagggagggaaaagtgcacttt 34834676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 14823515 - 14823617
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||||||||||||| || ||||||| | ||||| || || ||||||| |   |||||||| | ||| ||||||||||||||| |    
T  14823515 cacacgtggcgtgccacgtaggcattgaccggtcaaaattgaccaaaagaattaaggttgcaacggttctaaatcttagggggccaaaattgtagtttct 14823614  T
Q  274 gta 276  Q
    |||    
T  14823615 gta 14823617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 8e-33; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 18978179 - 18978039
Alignment:
Q  175 acacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttg 274  Q
    ||||||| | || |||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  18978179 acacgtggcgtgccacgtaggcattgacccgtcaaaattggaaaaaaggatcaaagttgcaaaggggctaaatcttaaggggccaaaattgtagtttttg 18978080  T
Q  275 tatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    || |||| ||  |||||||  ||| |||| |||||||||||    
T  18978079 tacttagggggccaaaattgaaagattttgaaagttagggg 18978039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 186 - 328
Target Start/End: Original strand, 18979072 - 18979217
Alignment:
Q  186 gtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagagga 285  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||| ||||||| ||     
T  18979072 gtcatgtaggcattgacctgtcaaaattggcaaaaaggatcaaagttgcaaatgggctaaatcataaggggccaaaattgtagtttttatatttaggggg 18979171  T
Q  286 tcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
     |||||||  ||||| || |||||||   |||||||||||||||||    
T  18979172 ccaaaattgcaagttgttgaaagttagggggggaaaagtgcacttt 18979217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 195 - 328
Target Start/End: Original strand, 29968298 - 29968433
Alignment:
Q  195 gcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaatta 294  Q
    ||||||||| || ||||||||| |||| ||| |||||||||| | |||||||||| | ||||||| |||||||||||||||| |||| ||  |||||||     
T  29968298 gcattgaccggtcaaaattggccaaaatgattaaagttgcaatggggctaaatcttaggggaccagaattgtagtttttgtacttagggggccaaaattg 29968397  T
Q  295 taagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
     ||||||||||||||||  |||||||||||||||||    
T  29968398 caagtttttaaaagttaagggggaaaagtgcacttt 29968433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 186 - 315
Target Start/End: Complemental strand, 18971059 - 18970930
Alignment:
Q  186 gtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagagga 285  Q
    |||| ||||||||||||| || ||||||||||||||||| ||||||||||||| || |||||||  ||||  ||||||||||||||||||| |||| ||     
T  18971059 gtcatgtaggcattgaccggtcaaaattggcaaaaaggaccaaagttgcaaaggggttaaatcttcaggggtcaaaattgtagtttttgtacttaggggg 18970960  T
Q  286 tcaaaattataagtttttaaaagttagggg 315  Q
     |||||||  ||| |||| |||||||||||    
T  18970959 ccaaaattgaaagattttgaaagttagggg 18970930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 24123029 - 24122902
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | ||||||| ||||| |||||||| ||||||||| | ||||| |||||| ||||||||||| |||| || ||    
T  24123029 cacgtaggcattgaccggtcaaaattgaccaaaaggaccaaagatgcaaagaagctaaatcttaggggactaaaattatagtttttgtacttagggggtc 24122930  T
Q  288 aaaattataagtttttaaaagttagggg 315  Q
    ||||||  || ||||| |||||||||||    
T  24122929 aaaattgcaaattttttaaagttagggg 24122902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 188 - 329
Target Start/End: Complemental strand, 45113016 - 45112874
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||| |||||||||| |||||||  ||||| ||||||| |||||||| |||||| ||| | |||||||||||| || |||||||| ||||| ||      
T  45113016 cacgtaggtattgaccagtcaaaattgataaaaaagatcaaaattgcaaaggggctaattcttaggggaccaaaattataatttttgtacttaga-gact 45112918  T
Q  288 aaaattataagtttttaaaagttagg--ggaaaagtgcactttc 329  Q
    ||||||| || ||||| |||||||||  |||||| |||||||||    
T  45112917 aaaattacaaatttttgaaagttagggaggaaaaatgcactttc 45112874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 32207309 - 32207420
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta-gggga 316  Q
    ||||||| ||||| |||||||||||||||||| ||| | |||||||||||||||||||| |||| |  ||||||||  |||||||| || |||| ||||     
T  32207309 aaaaggaccaaagatgcaaagaggctaaatcttaagaggccaaaattgtagtttttgtacttagggcgtcaaaattgcaagtttttgaaggttagggggg 32207408  T
Q  317 aaagtgcacttt 328  Q
    ||||||||||||    
T  32207409 aaagtgcacttt 32207420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 174 - 311
Target Start/End: Complemental strand, 12352082 - 12351945
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||||| | ||| || ||||||||| || ||||||| | |||||| | ||| |||||| |||||||||||| | |||  ||||||||||||||||    
T  12352082 cacacgtgacacgccacatatgcattgaccggtcaaaattgtccaaaagggttaaaattgcaatgaggctaaatcttagggggtcaaaattgtagttttt 12351983  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    ||| |||| || ||||||||  || ||||| |||||||    
T  12351982 gtacttagggggtcaaaattgcaaatttttgaaagtta 12351945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 22221338 - 22221461
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||||||||| || |||| |||||||||| | |||  |||||||||||||||  || |||| || ||||||||  |||||||| |||    
T  22221338 aaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaa 22221437  T
Q  308 gttagg---ggaaaagtgcacttt 328  Q
    ||||||   |||||||||||||||    
T  22221438 gttaggggtggaaaagtgcacttt 22221461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 22227680 - 22227803
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||||||||| || |||| |||||||||| | |||  |||||||||||||||  || |||| || ||||||||  |||||||| |||    
T  22227680 aaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaa 22227779  T
Q  308 gttagg---ggaaaagtgcacttt 328  Q
    ||||||   |||||||||||||||    
T  22227780 gttaggggtggaaaagtgcacttt 22227803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 40471121 - 40471243
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||| || ||||| | |||||||| ||||||| ||||| | ||||||||||||||||||||||  ||| ||||||| ||||||||| |||    
T  40471121 aaaattgaccaaaatgaccaaagatacaaagaggttaaatcttaaggggctaaaattgtagtttttgtattta-tggaccaaaattgtaagttttttaaa 40471219  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  40471220 gttaaagggggaaaagtgcacttt 40471243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 1823680 - 1823576
Alignment:
Q  208 aaaattggcaaaaaggatcaaagt-tgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaa 306  Q
    ||||||||| ||||||| ||||   ||||||  |||||||||| | |||||| ||||||||||||||||| ||||||| ||||||||  |||||||||||    
T  1823680 aaaattggccaaaaggaccaaaaaatgcaaatgggctaaatcttaggggaccgaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaa 1823581  T
Q  307 agtta 311  Q
    |||||    
T  1823580 agtta 1823576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 1824052 - 1824156
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||  |||||||||| | ||| |||||||||||||||||||| |||| ||| |||||||  |||||||| |||    
T  1824052 aaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttgaaa 1824151  T
Q  308 gttag 312  Q
    |||||    
T  1824152 gttag 1824156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 1858125 - 1858021
Alignment:
Q  208 aaaattggcaaaaaggatcaaagt-tgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaa 306  Q
    ||||||||| ||||||| ||||   ||||||  |||||||||| | |||||| ||||||||||||||||| ||||||| ||||||||  |||||||||||    
T  1858125 aaaattggccaaaaggaccaaaaaatgcaaatgggctaaatcttaggggaccgaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaa 1858026  T
Q  307 agtta 311  Q
    |||||    
T  1858025 agtta 1858021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 1858497 - 1858601
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||  |||||||||| | ||| |||||||||||||||||||| |||| ||| |||||||  |||||||| |||    
T  1858497 aaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttgaaa 1858596  T
Q  308 gttag 312  Q
    |||||    
T  1858597 gttag 1858601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 2378977 - 2378868
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggaa 317  Q
    ||||||| ||||| |||||| |||||| |||| |||||  ||||||| | |||||||||| ||| ||||||||||  ||| ||||||||||||| || ||    
T  2378977 aaaaggaccaaagatgcaaataggctagatcttaaggggtcaaaattatggtttttgtatataggggatcaaaatcgtaactttttaaaagtta-ggaaa 2378879  T
Q  318 aagtgcacttt 328  Q
    |||||||||||    
T  2378878 aagtgcacttt 2378868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 5514098 - 5513986
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg-- 315  Q
    ||||||| ||||| ||||||| |||||||| | | |||  ||||||||||||||||||| |||| ||  |||||||  |||||||| |||||||||||      
T  5514098 aaaaggaccaaagatgcaaaggggctaaattttaggggggcaaaattgtagtttttgtacttagggggccaaaattggaagtttttgaaagttagggggt 5513999  T
Q  316 aaaagtgcacttt 328  Q
    |||||||||||||    
T  5513998 aaaagtgcacttt 5513986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 10007737 - 10007860
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| |||||||||| | |||||||||||||| |||| | || |||| ||  |||||||  |||||||| |||    
T  10007737 aaaattgacgaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaaattgtggtttctatacttagggggccaaaattgcaagtttttgaaa 10007836  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  10007837 gttaaggggggaaaagtgcacttt 10007860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 328
Target Start/End: Complemental strand, 30569046 - 30568891
Alignment:
Q  175 acacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttg 274  Q
    ||||||| | || ||||||| |||||||  || | ||||||| ||||||| ||||| ||||||| |||||||||| | |||| ||||||| |||||||||    
T  30569046 acacgtggcgtgccacgtagacattgactggtcacaattggccaaaaggaccaaagatgcaaaggggctaaatcttaggggatcaaaattatagtttttg 30568947  T
Q  275 tatttagaggatcaaaattataagtttttaaaagtt--aggggaaaagtgcacttt 328  Q
    ||  ||   |||||||||| ||| ||||| ||| ||  ||||| ||||||||||||    
T  30568946 tacctaagagatcaaaattgtaactttttgaaacttagagggggaaagtgcacttt 30568891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 17844435 - 17844334
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||||| || || |||||||||||||  | ||||||||| ||||||| ||||| |  ||||||| ||||| |  ||||||||||||||||||||||    
T  17844435 cacacgtgacgtgccatgtaggcattgaccgatcaaaattggccaaaaggaccaaagatataaagaggttaaatgt-tagggaccaaaattgtagttttt 17844337  T
Q  274 gta 276  Q
    |||    
T  17844336 gta 17844334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 10006471 - 10006348
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| |||||||||| | ||| |||||||||| |||||  || |||| ||  |||||||  |||||||| |||    
T  10006471 aaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgttgttttgatacttagggggccaaaattgcaagtttttgaaa 10006372  T
Q  308 gttag---gggaaaagtgcacttt 328  Q
    |||||   ||||||||||||||||    
T  10006371 gttagagggggaaaagtgcacttt 10006348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 328
Target Start/End: Complemental strand, 11287919 - 11287780
Alignment:
Q  192 taggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaa 291  Q
    ||||| |||||| || |||||||  ||||| ||||||| ||||||||  | ||| ||| | ||| ||||||||||||||| |||| |||| ||  |||||    
T  11287919 taggcgttgaccggtcaaaattgataaaaatgatcaaaattgcaaaggagttaattcttagggggccaaaattgtagtttctgtacttagtgggccaaaa 11287820  T
Q  292 ttataagtttttaaaagttagggg---aaaagtgcacttt 328  Q
    ||  |||||||| |||||||||||   |||||||||||||    
T  11287819 ttgcaagttttttaaagttaggggtgaaaaagtgcacttt 11287780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 12353301 - 12353456
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| || | || ||| ||||||||| || ||||||| | ||||| || ||| |||||| | |||||||||| | ||| |||||||| |||||||     
T  12353301 cacacgtggcacgccatgtaagcattgaccggtcaaaattgaccaaaagaattaaaattgcaatggggctaaatcttagggggccaaaattatagtttt- 12353399  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    ||| |||| ||  |||||||  |||||||| |||||||  |||||||||||||||||    
T  12353400 gtacttagggggccaaaattgcaagtttttgaaagttaagggggaaaagtgcacttt 12353456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 40469416 - 40469356
Alignment:
Q  259 aaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggaaaa 319  Q
    ||||||||| |||||||||||||||||| ||||||| || ||||| ||||||| |||||||    
T  40469416 aaaattgtaatttttgtatttagaggatgaaaattacaaatttttgaaagttaagggaaaa 40469356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 327
Target Start/End: Original strand, 45114471 - 45114612
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||  | |||| ||| |||||||||| |||| |||||||  || | ||||||||||||||| ||||  ||| | | |    
T  45114471 cacgtaggcattgaccggtcaaaattaaccaaaatgattaaagttgcaatgaggttaaatct-tagaggccaaaattgtagtttgtgtacatagtgaacc 45114569  T
Q  288 aaaattataagtttttaaaagttagg---ggaaaagtgcactt 327  Q
    ||||||  |||||||| |||||||||   ||||||||||||||    
T  45114570 aaaattgcaagtttttgaaagttaggggcggaaaagtgcactt 45114612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 22220505 - 22220392
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggg 314  Q
    ||||||| ||||| ||||||  |||||||||| | ||| ||||||||||||||||| ||  ||| || ||||||||  |||| ||| |||||||   |||    
T  22220505 aaaaggaccaaagatgcaaatgggctaaatcttagggggccaaaattgtagtttttatacatagggggtcaaaattgcaagtattttaaagttagagggg 22220406  T
Q  315 gaaaagtgcacttt 328  Q
    ||||||||||||||    
T  22220405 gaaaagtgcacttt 22220392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 30336475 - 30336582
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttag-aggatcaaaattataagtttttaaa 306  Q
    ||||||| | ||||||| ||||| ||||||  |||||||||| |  ||   |||||||||||||||||| |||| ||| | |||||||||||||||| ||    
T  30336475 aaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagagggttaaaattgtagtttttgtacttaggaggct-aaaattataagtttttgaa 30336573  T
Q  307 agttagggg 315  Q
    |||||||||    
T  30336574 agttagggg 30336582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 34625174 - 34625241
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgt 275  Q
    ||||||| | ||||||||||||||||| |||||| ||||||  | ||| | |||||||||||||||||    
T  34625174 aaaattgaccaaaaggatcaaagttgcgaagagggtaaatcatagggggctaaaattgtagtttttgt 34625241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 18488211 - 18488305
Alignment:
Q  183 catgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtat 277  Q
    |||| |||||||||||||||  || |||| |||  ||||||| ||||| ||||||| || || |||| |  || |||||||||||||||||||||    
T  18488211 catgccacgtaggcattgactggtcaaaactggtcaaaaggaccaaagatgcaaaggggttatatcttagagggccaaaattgtagtttttgtat 18488305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 5514294 - 5514366
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg--aaaagtgcacttt 328  Q
    ||||||||||||||||||||||||| |   ||||||  |||||||| ||| |||||||  |||||||||||||    
T  5514294 caaaattgtagtttttgtatttagaaggctaaaattgcaagttttttaaaattaggggataaaagtgcacttt 5514366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 8388589 - 8388468
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||   |||||| |||||||||| | ||| |||||||| |||||||||||  ||| ||   ||||||  || |||||||||    
T  8388589 aaaattgggcaaaaggaccaaaaacgcaaaggggctaaatcttagggggccaaaattatagtttttgtacatagggggctaaaattgcaactttttaaaa 8388490  T
Q  308 gtta-ggggaaaagtgcacttt 328  Q
    |||| |||| ||||||||||||    
T  8388489 gttaggggggaaagtgcacttt 8388468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 24359915 - 24359858
Alignment:
Q  227 aaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagagg 284  Q
    |||| |||||| ||||||||||| | |||  |||||||||||||||||||| ||||||    
T  24359915 aaagatgcaaataggctaaatcttagggggtcaaaattgtagtttttgtatatagagg 24359858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 30335756 - 30335663
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    ||||||| ||||| ||||||| |||||||||| | |||   ||||||||| |||||||| |||| |   |||||||  ||||||||||||||||    
T  30335756 aaaaggaccaaagatgcaaaggggctaaatcttagggggttaaaattgtaatttttgtacttagcgagccaaaattgcaagtttttaaaagtta 30335663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 5e-25; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 188 - 328
Target Start/End: Original strand, 36450875 - 36451017
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||||||||  ||||| |||   ||| || |||||||||||| |||| |||| ||| |    
T  36450875 cacgtaggcattgaccagtcaaaattggccaaaaggatcaaaattgcaaaggagctaattcttggggggccgaaattgtagtttctgtacttaggggacc 36450974  T
Q  288 aaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    ||||||  |||||||| |||||||  |||||||||||||||||    
T  36450975 aaaattgcaagtttttgaaagttaagggggaaaagtgcacttt 36451017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 22587661 - 22587522
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| || ||||||||||||  || ||||||||| ||||||| ||||| |||||||||||||||||| | ||| |||||||||||||||||    
T  22587661 cacacgtggcatgccatgtaggcattgactggtcaaaattggccaaaaggaccaaagatgcaaagaggctaaatcttagggggccaaaattgtagttttt 22587562  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggg 314  Q
    |||  ||| ||| |||||||  || ||||| ||||||||||    
T  22587561 gta-ataggggaccaaaattggaactttttgaaagttaggg 22587522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 22848308 - 22848195
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg-- 315  Q
    ||||||| ||||| ||||||| |||||||||| | ||  ||||||||||||||||||||||||| ||| |||||||  |||||||| |||||||||||      
T  22848308 aaaaggaccaaagctgcaaaggggctaaatcttagggagccaaaattgtagtttttgtatttaggggaccaaaattgcaagtttttgaaagttagggggg 22848209  T
Q  316 -aaaagtgcacttt 328  Q
     |||||||||||||    
T  22848208 taaaagtgcacttt 22848195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 36449939 - 36449782
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||| || |||| |||||||||||||||| || ||||||||  |||||||||||| |||||||| | |||| |||   |||  ||||||||||||||||    
T  36449939 cacacatggcatgccacgtaggcattgaccggtcaaaattggtcaaaaggatcaaaattgcaaagggcctaattcttgggggggcaaaattgtagttttt 36449840  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    ||| |||| ||  |||||||  |||||||| |||||||   |||||||||||||||||    
T  36449839 gtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttt 36449782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 7899822 - 7899979
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||| ||||||||| || ||||||| | |||| ||| |||||| ||| | |||||||||| | ||| | ||||||||||||| |    
T  7899822 cacacgtggcgtgccacgtatgcattgaccggtcaaaattgaccaaaaagattaaagttacaatggggctaaatcttagggggctaaaattgtagtttct 7899921  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    ||| |||| ||| |||||||  |||||||| |||||||   |||||||||||||||||    
T  7899922 gtacttaggggaccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttt 7899979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 209 - 328
Target Start/End: Original strand, 22587929 - 22588050
Alignment:
Q  209 aaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaag 308  Q
    |||||||| ||||||| ||||| ||||||| |||||||||| ||||| ||||||||||||||||||||  ||| ||  |||||||  |||||||| ||||    
T  22587929 aaattggccaaaaggaccaaagatgcaaaggggctaaatcttaaggggccaaaattgtagtttttgtacatag-gggccaaaattgcaagtttttgaaag 22588027  T
Q  309 tt---aggggaaaagtgcacttt 328  Q
    ||   ||||||||| ||||||||    
T  22588028 ttatgaggggaaaaatgcacttt 22588050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 328
Target Start/End: Original strand, 38840449 - 38840590
Alignment:
Q  190 cgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaa 289  Q
    |||||||||||||| || |||||||   |||||||| ||| |||||| | |||||||||| | ||| | |||||||||||||||||| |||| ||   ||    
T  38840449 cgtaggcattgaccggtcaaaattgatcaaaaggattaaaattgcaatggggctaaatcttagggggctaaaattgtagtttttgtacttagggggctaa 38840548  T
Q  290 aattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    ||||  |||||||| |||||||   |||||||||||||||||    
T  38840549 aattgcaagtttttgaaagttaaggggggaaaagtgcacttt 38840590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 8535653 - 8535751
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagg-ggaaaagtgcacttt 328  Q
    |||||||| |||||| ||| | |||  |||||||||||||| | || ||| ||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  8535653 ttgcaaaggggctaattcttagggggtcaaaattgtagtttctctacttaaaggatcaaaattacaagtttttaaaagttaggaggaaaagtgtacttt 8535751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 18904498 - 18904371
Alignment:
Q  204 agttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttt 303  Q
    ||||||||||||| ||||||| ||||| || |||| |||||| ||| | || ||||||||||||||||||||| |||  ||  |||||||  | ||||||    
T  18904498 agttaaaattggccaaaaggaccaaagatgtaaaggggctaattcttagggaaccaaaattgtagtttttgtacttaaggggccaaaattgcacgttttt 18904399  T
Q  304 aaaagtta---ggggaaaagtgcacttt 328  Q
     |||||||   |||||||||||||||||    
T  18904398 gaaagttaaggggggaaaagtgcacttt 18904371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 23869519 - 23869631
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagg--gg 315  Q
    ||||||||||||| ||||||| |||||||||| | ||  | ||||||||||||||||||||||| ||  |||||||  |||||||||||  | |||  ||    
T  23869519 aaaaggatcaaagatgcaaaggggctaaatcttagggagctaaaattgtagtttttgtatttagggggccaaaattgcaagtttttaaagttaagggtgg 23869618  T
Q  316 aaaagtgcacttt 328  Q
    |||||||||||||    
T  23869619 aaaagtgcacttt 23869631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 24476868 - 24476929
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggaaaa 319  Q
    ||||||||||||||||||| |||| ||| |||||||| ||||||||||||||| ||||||||    
T  24476868 caaaattgtagtttttgtacttaggggaccaaaattacaagtttttaaaagttgggggaaaa 24476929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 11258785 - 11258889
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||  ||||| | |||||||||| | ||||| |||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  11258785 aaaattgaccaaaaggatcaaatctgcaatggggctaaatcttaggggactaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 11258884  T
Q  308 gttag 312  Q
    |||||    
T  11258885 gttag 11258889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 311
Target Start/End: Original strand, 13570531 - 13570634
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    |||||||||||||||||||||||||| |||| | |||| |||   |||||||||||| ||||||||||| |||  |||  ||||||  |||||||| |||    
T  13570531 aaaattggcaaaaaggatcaaagttgtaaagggactaattcttgggggaccaaaattatagtttttgtacttaagggactaaaattgcaagtttttgaaa 13570630  T
Q  308 gtta 311  Q
    ||||    
T  13570631 gtta 13570634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 324
Target Start/End: Original strand, 18300699 - 18300815
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| |||||||| |  ||||  ||||||||||||||||||| |||| || ||||||||  |||||| | |||    
T  18300699 aaaattgtccaaaaggaccaaagatgcaaaggggctaaat-tataggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttatgaaa 18300797  T
Q  308 gtta-ggggaaaagtgca 324  Q
    |||| |||||||||||||    
T  18300798 gttagggggaaaagtgca 18300815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 328
Target Start/End: Complemental strand, 8534685 - 8534587
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    ||||||||||||||| |||   ||||||||||||||||||| | || ||| |||||||||||| ||||||||| ||| |||  ||||||||| |||||||    
T  8534685 ttgcaaagaggctaattcttg-gggaccaaaattgtagtttctatacttaaaggatcaaaattgtaagtttttgaaaattaagggggaaaagagcacttt 8534587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 1410119 - 1410060
Alignment:
Q  216 caaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgt 275  Q
    |||||||||| ||||||||||| ||||||||||| | ||||||||||||||  |||||||    
T  1410119 caaaaaggattaaagttgcaaataggctaaatcttaggggaccaaaattgtcatttttgt 1410060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 18797374 - 18797267
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| ||||| ||||||| |||||||| | | |||  |||||||||||||||  || |||  || ||||||||  |||||||| |||    
T  18797374 aaaattggctaaaaggaccaaagatgcaaaggggctaaattttagggggtcaaaattgtagttttaatacttaaggggtcaaaattgcaagtttttgaaa 18797275  T
Q  308 gttagggg 315  Q
    ||||||||    
T  18797274 gttagggg 18797267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 277
Target Start/End: Complemental strand, 32739795 - 32739709
Alignment:
Q  191 gtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtat 277  Q
    |||||| |||||| || ||||||||| ||| ||| ||||| || |||  | |||||||| ||||| |||||||||||||||||||||    
T  32739795 gtaggcgttgaccggtcaaaattggccaaatggaccaaagatggaaaatgactaaatcttaaggggccaaaattgtagtttttgtat 32739709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 41878234 - 41878148
Alignment:
Q  195 gcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttag 281  Q
    ||||||||| || ||||||| | |||| ||| ||| |||||| | |||||||||| ||||| ||||||||||||||| |||| ||||    
T  41878234 gcattgaccggtcaaaattgaccaaaaagattaaaattgcaatggggctaaatcttaaggggccaaaattgtagtttctgtacttag 41878148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 7898852 - 7898755
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttt 271  Q
    |||||||| |||| |||||| ||||||||  || |||||||   |||||||| ||| |||||| | |||||||||| | ||| |||||||||||||||    
T  7898852 cacacgtggcatgccacgtaagcattgactggtcaaaattgatcaaaaggattaaaattgcaatggggctaaatcttagggggccaaaattgtagttt 7898755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 13030416 - 13030296
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||| || ||||| ||||||   ||||||||| | ||| | ||||||||| |||||||| |||| ||  |||||||| |||||||| |||    
T  13030416 aaaattgaccaaaatgaccaaagatgcaaaagagctaaatcttagggggcaaaaattgtaatttttgtacttaggggc-caaaattacaagtttttgaaa 13030318  T
Q  308 gtta-ggggaaaagtgcacttt 328  Q
    |||| |||||||||||||||||    
T  13030317 gttagggggaaaagtgcacttt 13030296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 18299500 - 18299377
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| ||||||  |||||||||  | ||| ||||||||||||||||| || ||||  |  |||||||  |||||||| |||    
T  18299500 aaaattgaccaaaaggatcaaagatgcaaaagggctaaatcatagggggccaaaattgtagtttttatacttaggtggccaaaattgaaagtttttgaaa 18299401  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   | |||||||||||||||    
T  18299400 gttacgggtggaaaagtgcacttt 18299377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 38839389 - 38839296
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttag 281  Q
    |||||| ||||||||  || ||||||| | |||| ||| ||| |||||| | |||||||||| | ||| |||||||||||||||||||| ||||    
T  38839389 cacgtaagcattgacgggtcaaaattgaccaaaatgattaaaattgcaatggggctaaatcttagggggccaaaattgtagtttttgtagttag 38839296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 11257783 - 11257626
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgacca-gttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttt 272  Q
    |||||||| |||| |||| |||| ||||| | || |||||||   |||||||||||| |||||| | |||||||||| | | | ||||||||||||||||    
T  11257783 cacacgtggcatgccacgcaggcgttgactatgtcaaaattgatcaaaaggatcaaatttgcaatggggctaaatcttaggaggccaaaattgtagtttt 11257684  T
Q  273 tgtatttagaggatcaaaattataagtttttaaaagttagggg---aaaagtgcacttt 328  Q
    | || |||| || | ||||||  |||||||| |||||||| ||   |||||||||||||    
T  11257683 tatacttag-ggtttaaaattgcaagtttttgaaagttagaggagtaaaagtgcacttt 11257626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 18869007 - 18868944
Alignment:
Q  252 agggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||||| ||||||||||||||||||||||||  |  |||||||  |||||||| |||||||||||    
T  18869007 agggatcaaaattgtagtttttgtatttaggaggccaaaattgcaagtttttgaaagttagggg 18868944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 11938763 - 11938885
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    |||||||||||||| ||||||| |||||||   ||||| ||| | |||  ||||||| || |||||||| ||||  || |||||||  |||||||| |||    
T  11938763 aaaattggcaaaaatgatcaaaattgcaaaagagctaattcttaggggggcaaaattata-tttttgtacttaggagaccaaaattgcaagtttttgaaa 11938861  T
Q  308 gttagg---ggaaaagtgcacttt 328  Q
    ||||||   |||||||||||||||    
T  11938862 gttaggggtggaaaagtgcacttt 11938885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 5e-25; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 188 - 328
Target Start/End: Original strand, 39699721 - 39699863
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | |||||||| |||||||||| | |||||||||| | ||| ||||||||||||||| |||| |||| || ||    
T  39699721 cacgtaggcattgaccggtcaaaattgaccaaaaggattaaagttgcaatggggctaaatcttagggggccaaaattgtagtttctgtacttagggggtc 39699820  T
Q  288 aaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    ||||||  ||||| || |||||||  |||||||||||||||||    
T  39699821 aaaattgcaagttattgaaagttaggggggaaaagtgcacttt 39699863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 52275095 - 52274972
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||||||||||| |||||| |||||||||||| | ||| |||||||||||||||||||| |||| || ||||||||  |||||||| |||    
T  52275095 aaaattgaccaaaaggatcaaatttgcaatgaggctaaatcttaggggcccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaa 52274996  T
Q  308 gttagggg---aaaagtgcacttt 328  Q
    ||||||||   |||||||||||||    
T  52274995 gttaggggggtaaaagtgcacttt 52274972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 44411906 - 44412013
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||||| || ||   |||||||||||||||    
T  44411906 cacacgtggcgtgccacgtaggcattgaccggtcaaaattggcaaaaaggatcaaagttgcaaagggcctaaatcttaaaggggtaaaattgtagttttt 44412005  T
Q  274 gtatttag 281  Q
    ||| ||||    
T  44412006 gtacttag 44412013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 36613888 - 36613986
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggga 316  Q
    |||||||  ||||||||||||||||||||||| | |||  ||||||||||||||||||| |||| ||  |||||||| |||||||||||||||||||||    
T  36613888 aaaaggactaaagttgcaaagaggctaaatcttagggggtcaaaattgtagtttttgtacttagggggccaaaattacaagtttttaaaagttagggga 36613986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 188 - 313
Target Start/End: Complemental strand, 33088214 - 33088089
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    ||||||||| |||||| |||||||||||| |||||||  ||||  |||||  |||||||||| ||||||  ||||||||||||||| |||||||  |||     
T  33088214 cacgtaggctttgaccggttaaaattggccaaaaggactaaagaagcaaatgggctaaatcttaagggaataaaattgtagtttttatatttaggagata 33088115  T
Q  288 aaaattataagtttttaaaagttagg 313  Q
    ||||||| |||||||| |||||||||    
T  33088114 aaaattacaagtttttgaaagttagg 33088089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 174 - 315
Target Start/End: Complemental strand, 14999442 - 14999304
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||| || |||| |||||||||||||||| || ||||||| |||||||||||||||||||| |   |||||||   |  ||| ||||||||||||||||    
T  14999442 cacacatggcatgccacgtaggcattgaccggtcaaaattgacaaaaaggatcaaagttgcagatgagctaaat---agaggatcaaaattgtagttttt 14999346  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||| |||| || ||||||||  |||||||| |||||||||||    
T  14999345 gtacttagggggtcaaaattgcaagtttttgaaagttagggg 14999304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 45149910 - 45150067
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctca-agggaccaaaattgtagtttt 272  Q
    |||||||| |||  ||||||||| |||||| || ||||||||| ||||||||||||| ||||||| |||||||||| |  |||  ||||||||| |||||    
T  45149910 cacacgtggcattccacgtaggctttgaccggtcaaaattggccaaaaggatcaaagatgcaaaggggctaaatcttagggggggcaaaattgttgtttt 45150009  T
Q  273 tgtatttagaggatcaaaattataagtttttaaaagtta--ggggaaaagtgcacttt 328  Q
    |||| |||  ||  |||||||  |||||||| |||||||  |||||||||||||||||    
T  45150010 tgtacttaaggggccaaaattgcaagtttttgaaagttaggggggaaaagtgcacttt 45150067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 24422927 - 24422804
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||||||||||| |||||| | |||||||||| | ||| |||||||||||||||||||| |||| || ||||||||  |||||||| |||    
T  24422927 aaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaa 24422828  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   ||| |||||||||||||    
T  24422827 gttaagggggtaaaagtgcacttt 24422804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 14999904 - 15000035
Alignment:
Q  183 catgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttaga 282  Q
    |||| |||||||||||||||  || ||||||| ||||||||||||||||||||||  | |||||| | | | |  ||  ||||||| ||||||| ||||     
T  14999904 catgccacgtaggcattgacaggtcaaaattgacaaaaaggatcaaagttgcaaatggactaaattttaggtggtcatgattgtagattttgtacttagg 15000003  T
Q  283 ggatcaaaattataagtttttaaaagttaggg 314  Q
    |||||||||||  |||||||||||||||||||    
T  15000004 ggatcaaaattgcaagtttttaaaagttaggg 15000035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 51684493 - 51684370
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| ||||| ||||||| |||||||||| | ||| ||||||||||||||||| ||  ||| ||  |||||||  || |||||||||    
T  51684493 aaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacatagggggccaaaattgcaactttttaaaa 51684394  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  51684393 gttaaggggggaaaagtgcacttt 51684370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 51685736 - 51685862
Alignment:
Q  205 gttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttta 304  Q
    |||||||||||| ||||||| ||||| ||||||| |||||||||| | |||  |||||||||||||||||||  ||||||  ||||||   || |||||     
T  51685736 gttaaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtacatagagggccaaaatcgcaactttttg 51685835  T
Q  305 aaagtta---ggggaaaagtgcacttt 328  Q
    |||||||   |||||||||||||||||    
T  51685836 aaagttagagggggaaaagtgcacttt 51685862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 43058912 - 43058805
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| || |||| |||||||||| |  || | |||||||||||||||||| |||| || ||||||||  |||||||| |||    
T  43058912 aaaattgaccaaaaggatcaaagatgtaaaggggctaaatcttagagggctaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttcaaa 43058813  T
Q  308 gttagggg 315  Q
    ||||||||    
T  43058812 gttagggg 43058805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 45148741 - 45148585
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||| ||| |||| ||||||||| |||||| || ||||||||| ||||||| ||||| ||||||| || ||||||| | |||  ||||||||||||||||    
T  45148741 cacatgtggcatgccacgtaggctttgaccggtcaaaattggccaaaaggaccaaagatgcaaaggggttaaatcttaggggggcaaaattgtagttttt 45148642  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
     || |||| ||  |||||||  |||||||| |||||||   ||| |||||||||||||    
T  45148641 -tacttagggggccaaaattgcaagtttttgaaagttaagcgggaaaaagtgcacttt 45148585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 328
Target Start/End: Complemental strand, 39698706 - 39698567
Alignment:
Q  191 gtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaa 290  Q
    ||||| ||||||| || ||||||| | |||||||| |||||||||| ||||||||||||  || | |||||||| |||||| |||| |||| ||  ||||    
T  39698706 gtaggtattgaccggtcaaaattgaccaaaaggattaaagttgcaacgaggctaaatct-tagtggccaaaattatagtttctgtacttagggggccaaa 39698608  T
Q  291 attataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    |||  ||||||||||||||||   |||| ||||||||||||    
T  39698607 attgaaagtttttaaaagttaaggggggtaaagtgcacttt 39698567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 24426049 - 24426172
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||| |||||| |||||| | |||||||||| | ||||| |||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  24426049 aaaattgaccaaaagtatcaaatttgcaatggggctaaatcttaggggactaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 24426148  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||| ||||||||||||    
T  24426149 gttagaggggggaaagtgcacttt 24426172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 40384852 - 40384784
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgta 276  Q
    ||||||||| ||||||| ||||| |||||||||||||||| | | |||| |||||||||||||||||||    
T  40384852 aaaattggccaaaaggaccaaagatgcaaagaggctaaattttaggggatcaaaattgtagtttttgta 40384784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 33088609 - 33088714
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag---gggaaaagtg 322  Q
    ||||||||||||| |||||||||| | ||   ||||||||||||||||||| ||| ||| ||||||||  |||||||| || |||||   ||||||||||    
T  33088609 caaagttgcaaaggggctaaatcttagggaggcaaaattgtagtttttgtacttaaagggtcaaaattgcaagtttttgaatgttagagagggaaaagtg 33088708  T
Q  323 cacttt 328  Q
    ||||||    
T  33088709 cacttt 33088714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 45157163 - 45157290
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||  || ||||||| | ||||||| ||||| ||||||| || ||||||| || ||  |||||||||||||||||||  ||| ||  |    
T  45157163 cacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggggcc 45157262  T
Q  288 aaaattataagtttttaaaagttagggg 315  Q
    ||||||  |||||||| ||| |||||||    
T  45157263 aaaattgcaagtttttgaaacttagggg 45157290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 31194178 - 31194112
Alignment:
Q  210 aattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgta 276  Q
    ||||||||||||||| ||||| |||||| ||||||||||| || || |||||||| |||||||||||    
T  31194178 aattggcaaaaaggaccaaagatgcaaaaaggctaaatcttaaagggccaaaattttagtttttgta 31194112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 39153056 - 39153158
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||  || ||||||| | ||||||| ||||| ||||||| || ||||||| |  ||  ||||||||||||||||    
T  39153056 cacacgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagttttt 39153155  T
Q  274 gta 276  Q
    |||    
T  39153156 gta 39153158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 11437173 - 11437296
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| || |||  || ||||||| | ||| |||||||||||||||||||| |||  ||| |||||||  |||||||| |||    
T  11437173 aaaattgaccaaaaggatcaaagatgtaaaagggttaaatcttagggggccaaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaa 11437272  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   ||| |||||||||||||    
T  11437273 gttaagggggaaaaagtgcacttt 11437296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 39152092 - 39151963
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||| ||| |||| |||||||||||||||  || ||||||| | ||||||| ||||| ||||||| || ||||||| || |   ||||||||||||||||    
T  39152092 cacatgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagagtcaaaattgtagttttt 39151993  T
Q  274 gtatttagaggatcaaaattataagttttt 303  Q
    |||  ||| ||  |||||||| ||||||||    
T  39151992 gtacatagggggccaaaattacaagttttt 39151963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 311
Target Start/End: Original strand, 43378697 - 43378790
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    |||||||| |||| |||||||  ||||||||| | | |  |||||||||| |||||||| |||| ||||||||||| ||||||||| |||||||    
T  43378697 aaaaggattaaagatgcaaaggtgctaaatcttaggtggtcaaaattgtaatttttgtacttaggggatcaaaattgtaagtttttgaaagtta 43378790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 44404603 - 44404496
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||||||||||||| || ||||||| | |||| || ||||| ||||||  |||||||| | | ||| |||||||| ||||||||    
T  44404603 cacacgtggcgtgccacgtaggcattgaccggtcaaaattgaccaaaatgaccaaagatgcaaattggctaaattttagggggccaaaattatagttttt 44404504  T
Q  274 gtatttag 281  Q
    ||| ||||    
T  44404503 gtacttag 44404496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 50680458 - 50680336
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| ||||||| || ||||||| | ||||| |||||| |||||||| || |||| ||  |||||||  ||||||||  ||    
T  50680458 aaaattgaccaaaaggatcaaagatgcaaaggggttaaatcttaggggactaaaattatagtttttatacttagggggccaaaattgcaagtttttggaa 50680359  T
Q  308 gtta--ggggaaaagtgcacttt 328  Q
    ||||  |||||||| ||||||||    
T  50680358 gttaagggggaaaaatgcacttt 50680336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 52276147 - 52276260
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt---aggg 314  Q
    |||||||||||| |||||| | |||||||||| | ||||| ||| || ||||||||||| |||| ||  |||||||| || ||||| ||||||   ||||    
T  52276147 aaaaggatcaaatttgcaatggggctaaatcttaggggactaaatttatagtttttgtacttagggggccaaaattacaaatttttgaaagttagaaggg 52276246  T
Q  315 gaaaagtgcacttt 328  Q
    | ||||||||||||    
T  52276247 ggaaagtgcacttt 52276260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 23980464 - 23980563
Alignment:
Q  232 tgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    ||||||| |||||||||| | | |||||||||| ||||||||||| |||| |   |||||||  |||||||| |||||||   |||||||||||||||||    
T  23980464 tgcaaaggggctaaatcttaggagaccaaaattatagtttttgtacttagggagccaaaattgcaagttttttaaagttagagggggaaaagtgcacttt 23980563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 35594342 - 35594221
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| ||||| ||||||| |||||||| | | ||| | ||||||||||||||  || |||| || ||||||||  |||||||| |||    
T  35594342 aaaattggctaaaaggaccaaagatgcaaaggggctaaattttaggggtc-aaaattgtagttttaatacttagggg-tcaaaattgcaagtttttgaaa 35594245  T
Q  308 gttagg---ggaaaagtgcacttt 328  Q
    ||||||   |||||||||||||||    
T  35594244 gttaggggtggaaaagtgcacttt 35594221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 41364937 - 41364833
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggg--gaaaagtgc 323  Q
    ||||||||||| | |||||||||| | |||  | ||||||| ||||| |||||||| ||  |||||||  |||||||| ||||||||||  |||||||||    
T  41364937 caaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtatttagggggccaaaattgcaagtttttgaaagttaggggagaaaagtgc 41364838  T
Q  324 acttt 328  Q
    |||||    
T  41364837 acttt 41364833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 52827474 - 52827351
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||    ||||||| ||||| ||| |||| || ||||||||  |||||||| |||    
T  52827474 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggttaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaa 52827375  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  52827374 gttagggggggaaaagtgcacttt 52827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 43059980 - 43060084
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||   ||||||||| |||||  ||||||||||||||||||| |||  || ||||||||  || ||||| |||    
T  43059980 aaaattgaccaaaaggaccaaagatgcaaatgagctaaatcttaaggggtcaaaattgtagtttttgtacttaaggggtcaaaatttcaaatttttgaaa 43060079  T
Q  308 gttag 312  Q
    |||||    
T  43060080 gttag 43060084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 328
Target Start/End: Original strand, 50681595 - 50681701
Alignment:
Q  221 aggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt---aggggaa 317  Q
    |||| ||||| |||||||||||||||||    |||||||| |||||||||||| || ||||||   |||||||  |||||||| ||| ||   |||||||    
T  50681595 aggaccaaagatgcaaagaggctaaatc----gggaccaatattgtagtttttatagttagagagccaaaattgcaagtttttgaaaattaagaggggaa 50681690  T
Q  318 aagtgcacttt 328  Q
    |||||||||||    
T  50681691 aagtgcacttt 50681701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 2940382 - 2940308
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaat 292  Q
    |||||||||||| ||||||||||| ||||||| | |||| |||||||||  |||||||   |||||| |||||||    
T  2940382 aaaaggatcaaaattgcaaagaggttaaatcttaggggatcaaaattgttatttttgttcatagagggtcaaaat 2940308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 30249497 - 30249567
Alignment:
Q  241 gctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    ||||||||| |||||  |||||||||||||||||||  || | ||||||||||| || ||||| |||||||    
T  30249497 gctaaatcttaaggggtcaaaattgtagtttttgtacataaaagatcaaaattacaactttttgaaagtta 30249567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 7674603 - 7674547
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||||||||||||||||||| |||| ||  |||||||  ||||||||||||||||||||    
T  7674603 caaaattgtagtttttgtacttag-ggcccaaaattgcaagtttttaaaagttagggg 7674547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 11436169 - 11436046
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||| | ||||| ||||||  || ||||||| | ||| ||||||||||||||||| || ||| | |  |||||||  |||||||| |||    
T  11436169 aaaattgaccaaaagaaccaaagatgcaaatgggttaaatcttagggggccaaaattgtagtttttatacttaaaaggccaaaattgcaagtttttgaaa 11436070  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  11436069 gttaaagggggaaaagtgcacttt 11436046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 7500581 - 7500459
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| ||||||| |||||||||| | ||| |||||||||| |||| | || ||||||||||||||||  |||||||| |||    
T  7500581 aaaattgaccaaaaggatcaaagatgcaaaggggctaaatcttagggggccaaaattgtggtttctatacttagaggatcaaaattgcaagtttttgaaa 7500482  T
Q  308 gtta--ggggaaaagtgcacttt 328  Q
    ||||  |||||||||||||||||    
T  7500481 gttaagggggaaaagtgcacttt 7500459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 31659750 - 31659643
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||||||||||| |||||| | |||||||||| | ||| |||||||||||||||||||| |||| || |||||||| ||||||||| |||    
T  31659750 aaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaattgtagtttttgtacttagggggtcaaaattgtaagtttttgaaa 31659651  T
Q  308 gttagggg 315  Q
    ||||||||    
T  31659650 gttagggg 31659643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 183 - 327
Target Start/End: Original strand, 14999104 - 14999249
Alignment:
Q  183 catgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttaga 282  Q
    |||| |||||| ||||||||| || ||||||| |  |||||| ||||| ||||||| |||||||||| | ||  |||||||||||||||||||||||||     
T  14999104 catgccacgtaagcattgaccggtcaaaattgacctaaaggaacaaagatgcaaaggggctaaatcttagggcgccaaaattgtagtttttgtatttagg 14999203  T
Q  283 ggatcaaaattataagtttttaaaagtta--ggggaaaagtgcactt 327  Q
    || ||||||||  ||||||| |||| |||  ||||||||||||||||    
T  14999204 gggtcaaaattgcaagttttgaaaa-ttaggggggaaaagtgcactt 14999249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 48933805 - 48933695
Alignment:
Q  195 gcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaatta 294  Q
    ||||||| | || |||||||| |||||||||||||||||||  |||| ||||||| |||||| |||||||||||||||||| | ||  |||||||||||     
T  48933805 gcattgagcggtcaaaattggaaaaaaggatcaaagttgca--gaggataaatcttaagggatcaaaattgtagtttttgtttataagggatcaaaattg 48933708  T
Q  295 taagtttttaaaa 307  Q
     ||||||||||||    
T  48933707 caagtttttaaaa 48933695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 174 - 313
Target Start/End: Original strand, 42886226 - 42886365
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| ||| ||| |||||| | || ||||||| | |||| |||||||| ||||||  |||||||||| | ||| | |||||||||||||||    
T  42886226 cacacgtggcatgccacatagacattgatcggtcaaaattgaccaaaatgatcaaagatgcaaatgggctaaatcttagggggctaaaattgtagttttt 42886325  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagg 313  Q
    |||||||| || ||||||||  || ||||| |||||||||    
T  42886326 gtatttagggggtcaaaattgcaaatttttgaaagttagg 42886365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 18371551 - 18371428
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| ||||||   ||||||||| | ||| |||||||||||||||||||| |||  ||  |||||||  |||||||| |||    
T  18371551 aaaattgaccaaaaggatcaaagatgcaaatgtgctaaatcttagggggccaaaattgtagtttttgtacttaaggggccaaaattgcaagtttttgaaa 18371452  T
Q  308 gtt---aggggaaaagtgcacttt 328  Q
    |||   ||||||||||||||||||    
T  18371451 gttaggaggggaaaagtgcacttt 18371428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 7501791 - 7501949
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgacca-gttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttt 272  Q
    |||||||| | || ||||||||||||||  | || ||||||| | ||||||| ||||| ||||||| ||||| |||| ||||| |||||||||| |||||    
T  7501791 cacacgtggcctgccacgtaggcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctacatcttaaggggccaaaattgttgtttt 7501890  T
Q  273 tgtatttagaggatcaaaattataagtttttaaaagttag---gggaaaagtgcacttt 328  Q
      || |||| ||  |||||||  |||||||| ||||||||   ||||||||||||||||    
T  7501891 gatacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcacttt 7501949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 22629613 - 22629505
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| |||||||||| | ||| |||||||||||||||||||| ||||  |  |||||||| |||||||| |||    
T  22629613 aaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttgtacttaggaggccaaaattacaagtttttgaaa 22629514  T
Q  308 gttagggga 316  Q
     ||| ||||    
T  22629513 attaaggga 22629505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 18372431 - 18372538
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| | ||||| |||||||||| | ||| |||||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  18372431 aaaattgaccaaaaggaccaaagatacaaaggggctaaatcttagggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 18372530  T
Q  308 gttagggg 315  Q
     |||||||    
T  18372531 attagggg 18372538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 34352726 - 34352883
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | ||||||||||||||||||| || ||||||||| |||| ||| ||||||||||  ||| ||||||| |  || |||||||| |||||| |    
T  34352726 cacacgtggcgtgtcacgtaggcattgaccggtcaaaattggccaaaatgattaaagttgcaataaggttaaatcttagagggccaaaattatagtttat 34352825  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagggg---aaaagtgcacttt 328  Q
    ||| |||  ||| ||||||   |||||||| ||| |||| ||   |||||||||||||    
T  34352826 gtacttaagggaccaaaatagaaagtttttgaaaattagaggtgaaaaagtgcacttt 34352883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 48934922 - 48934984
Alignment:
Q  253 gggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    |||| ||||||| ||||||||||| ||||||| ||||||||| |||||||| |||||||||||    
T  48934922 gggatcaaaattttagtttttgtacttagagggtcaaaattacaagtttttgaaagttagggg 48934984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 14998140 - 14998048
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgta 267  Q
    |||||||| |||| || |||||||||||||  ||||||||| | ||||||| ||||| ||||||| |||||||||| | ||| |||||||||||    
T  14998140 cacacgtggcatg-catgtaggcattgaccgattaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgta 14998048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 21505541 - 21505420
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| |||||||||| | |||  |||||||||||||||||||| | | ||  ||||||   || ||||| |||    
T  21505541 aaaattgtccaaaaggaccaaagatgcaaaggggctaaatcttatggggtcaaaattgtagtttttgtatatcgggggccaaaatcgcaactttttgaaa 21505442  T
Q  308 gtta-ggggaaaagtgcacttt 328  Q
    |||| |||||||||||||||||    
T  21505441 gttagggggaaaagtgcacttt 21505420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 22630426 - 22630549
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| | |||||||||| ||||| | ||| | |||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  22630426 aaaattgaccaaaaggaccaaagatacaaagaggctgaatcttagggggctaaaattgtagtttttgtaattagggggccaaaattgcaagtttttgaaa 22630525  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||    ||||||||||||||||    
T  22630526 gttatggagggaaaagtgcacttt 22630549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 47369889 - 47369797
Alignment:
Q  227 aaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtattta-gaggatcaaaattataagtttttaaaagttaggggaaaa 319  Q
    |||| ||||||| |||||||||| ||||| |||||||| ||||||||||| ||| |||| | ||||||  |||||||| |||||||||||||||    
T  47369889 aaagatgcaaaggggctaaatcttaaggggccaaaattatagtttttgtacttatgaggct-aaaattgcaagtttttgaaagttaggggaaaa 47369797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 43899524 - 43899462
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggaaaa 319  Q
    ||||||||||| ||||| |||||||| ||||||||||  |||||||| ||||||| |||||||    
T  43899524 ccaaaattgtaatttttatatttagaagatcaaaattgcaagtttttgaaagttaagggaaaa 43899462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 17781788 - 17781665
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||    ||||||| ||||| ||| |||| || ||||||||  |||||||| |||    
T  17781788 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggttaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaa 17781689  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   |||||||||||||||||    
T  17781688 gttagggggggaaaagtgcacttt 17781665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 315
Target Start/End: Original strand, 31949786 - 31949883
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| |||||||| ||  |||||||  |||||||| |||||||||||    
T  31949786 aaaaggaccaaagttgcaatggggctaaatcttaggggtgctaaattgtggttttggtatttagggggccaaaattgcaagtttttgaaagttagggg 31949883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 46483552 - 46483604
Alignment:
Q  278 ttagaggatcaaaattataagtttttaaaagtt--aggggaaaagtgcacttt 328  Q
    |||| |||||||||||| |||||||||||||||  ||||||||||||||||||    
T  46483552 ttaggggatcaaaattacaagtttttaaaagttaaaggggaaaagtgcacttt 46483604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 127462 - 127341
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| |||||||||||   |||||||||| | ||| | ||| |||| ||||| ||| |||| ||| |||||||  |||||||| |||    
T  127462 aaaattggtcaaaaggaccaaagttgcaattgggctaaatcttagggggctaaa-ttgtggttttggtacttaggggaccaaaattgcaagtttttgaaa 127364  T
Q  308 gtta--ggggaaaagtgcacttt 328  Q
    ||||  |||||||||||||||||    
T  127363 gttaggggggaaaagtgcacttt 127341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 3227578 - 3227691
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggg 314  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| |||||||   |||    
T  3227578 aaaaggaccaaagttgcaatggggctaaatcttaggggtgctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagggggg 3227677  T
Q  315 gaaaagtgcacttt 328  Q
    ||||||||||||||    
T  3227678 gaaaagtgcacttt 3227691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 31660993 - 31661106
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag---gg 314  Q
    |||||||||||| |||||| |||| ||||| | | ||||| |||||| |||||||||||  || ||| ||||||||  || ||||| ||||||||   ||    
T  31660993 aaaaggatcaaatttgcaatgaggttaaattttaggggactaaaattatagtttttgtacgtaaagggtcaaaattgcaaatttttgaaagttagagagg 31661092  T
Q  315 gaaaagtgcacttt 328  Q
    | ||||||||||||    
T  31661093 ggaaagtgcacttt 31661106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 3227224 - 3227127
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg 315  Q
    ||||||| ||||||||||| | |||||||||| |||||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| ||| |||||||    
T  3227224 aaaaggaccaaagttgcaatggggctaaatcttaagggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaaattagggg 3227127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 43900512 - 43900584
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag--gggaaaagtgcacttt 328  Q
    ||||| |||||||||| ||||||| | | |||||||| || ||||||||||||||  | ||||||||||||||    
T  43900512 caaaactgtagtttttatatttagggaaccaaaattacaaatttttaaaagttagaagagaaaagtgcacttt 43900584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 394 - 237
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| ||| ||||| |||||| || |||||||| |||||||||||||  ||||||| |||||| ||| | |||||||||||| ||||||||    
T  394 cacacgtggcatgccacataggcgttgaccggtcaaaattgggaaaaaggatcaaatatgcaaaggggctaattcttaggggaccaaaattatagttttt 295  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    |||  ||| ||| |||||||  || ||||| |||||||   |||| ||||||||||||    
T  294 gtacataggggaccaaaattgcaactttttgaaagttaagggggggaaagtgcacttt 237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 311
Target Start/End: Original strand, 918 - 1055
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||| || |||||| || |||||||| |||||||| ||||  ||||||| |||||| |||   ||| |||||||| ||||||||    
T  918 cacacgtggcatgccacgtaagcgttgaccggtcaaaattgggaaaaaggaccaaatatgcaaaggggctaattcttggggggccaaaattatagttttt 1017  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    |||  ||  ||| |||||||  || |||||||||||||    
T  1018 gtacataagggaccaaaattgcaactttttaaaagtta 1055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 178 - 328
Target Start/End: Complemental strand, 17627 - 17474
Alignment:
Q  178 cgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtat 277  Q
    |||| |||| |||||||||||||||| || |||||||| ||||| |||| || |||||||| || ||| |||   ||| ||||||||||||||||||||     
T  17627 cgtggcatgccacgtaggcattgaccggtcaaaattggtaaaaaagatcgaaattgcaaaggggataattcttggggggccaaaattgtagtttttgtac 17528  T
Q  278 ttagaggatcaaaattataagtttttaaaagtta---ggggaaaagtgcacttt 328  Q
    |||| ||  |||||||  ||||||||||||||||   ||| |||||||||||||    
T  17527 ttagggggccaaaattgcaagtttttaaaagttaagggggaaaaagtgcacttt 17474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 188 - 313
Target Start/End: Original strand, 18730 - 18855
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | |||| ||| |||||||||| | |||||||| | ||||| |||||||| |||||||||||  ||| ||| |    
T  18730 cacgtaggcattgaccggtcaaaattgaccaaaatgattaaagttgcaatggggctaaattttaaggggccaaaattatagtttttgtacctaggggacc 18829  T
Q  288 aaaattataagtttttaaaagttagg 313  Q
    ||||||  || |||||||||||||||    
T  18830 aaaattgcaaatttttaaaagttagg 18855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 174 - 319
Target Start/End: Complemental strand, 3836 - 3691
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || ||||||||||||||||||| ||||||| | |||| ||| |||||||||| | |||||||||| | ||||| |||||| |||||| |    
T  3836 cacacgtggcgtgccacgtaggcattgaccagtcaaaattgaccaaaaagattaaagttgcaatgcggctaaatcttaggggactaaaattatagtttct 3737  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggggaaaa 319  Q
     || | || ||  |||||||  |||||||| |||||||||||||||    
T  3736 ttactcagggggccaaaattgcaagtttttgaaagttaggggaaaa 3691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 4670 - 4826
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||| |||||||||||||||||||||| | || ||||||||  |||||||| |||||||||| | |||||||  | |  ||  |||||||||||||| |    
T  4670 cacacatgacatgtcacgtaggcattgatcggtcaaaattggtcaaaaggattaaagttgcaatggggctaaaatttagagggtcaaaattgtagtttct 4769  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagg--ggaaaagtgcacttt 328  Q
    |||||||| ||  |||||||  | ||||||||||||||||  || ||||||||||||    
T  4770 gtatttagggggccaaaattgcatgtttttaaaagttagggagggaaagtgcacttt 4826  T

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Target: scaffold0294 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 5422 - 5535
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggg 314  Q
    |||||||||||| ||| || | |||||||||| |||||  ||||||||||||||||||| |||  || ||||||||  |||||||| ||| |||   |||    
T  5422 aaaaggatcaaatttgtaatggggctaaatcttaagggggcaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaaattagggggg 5521  T
Q  315 gaaaagtgcacttt 328  Q
    ||||||||||||||    
T  5522 gaaaagtgcacttt 5535  T

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Target: scaffold0186 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 328
Target Start/End: Complemental strand, 23227 - 23085
Alignment:
Q  187 tcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggat 286  Q
    |||| ||||| ||||||||| |||||||   |||| ||| ||| |||||| | ||||||| || | |||| ||| ||||| ||||| ||| |||||||      
T  23227 tcacataggctttgaccagtcaaaattgagcaaaatgataaaatttgcaatggggctaaagcttaggggagcaagattgttgttttggtacttagaggga 23128  T
Q  287 caaaattataagtttttaaaagtta-ggggaaaagtgcacttt 328  Q
    |||||||  |||||||| ||||||| |||||||||||||||||    
T  23127 caaaattgcaagtttttgaaagttagggggaaaagtgcacttt 23085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 7399 - 7512
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---ggg 314  Q
    ||||||||||||||||||||| |||||||||| | |||  |||||||||||||| ||||  ||| || |||||||  ||| ||||| ||| |||   |||    
T  7399 aaaaggatcaaagttgcaaaggggctaaatcttagggggtcaaaattgtagtttctgtacatagggggtcaaaatcgtaactttttcaaacttagagggg 7498  T
Q  315 gaaaagtgcacttt 328  Q
    || |||||||||||    
T  7499 gacaagtgcacttt 7512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 7893 - 7933
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatc 248  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  7893 aaaattggccaaaaggatcaaagttgcaaaggggctaaatc 7933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 60217 - 60094
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||| || ||||| ||||||| |||||||||  | |||  |||||||||||||||| ||  ||| || ||||||||  ||||||||||||    
T  60217 aaaattgaccaaaaagaccaaagatgcaaaggggctaaatcatagggggtcaaaattgtagtttttatacatagggggtcaaaattgcaagtttttaaaa 60118  T
Q  308 gtta---ggggaaaagtgcacttt 328  Q
    ||||   | |||||||||||||||    
T  60117 gttagaggaggaaaagtgcacttt 60094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 49407 - 49472
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||| ||||||| |||||||||||||  ||||||||| | |||  ||||||||||||||||    
T  49407 aaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagttttt 49472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 6460 - 6402
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgta 276  Q
    ||||||| ||||| |||||| ||||||||||| | |||  |||||||||||||||||||    
T  6460 aaaaggaccaaagatgcaaaaaggctaaatcttagggggtcaaaattgtagtttttgta 6402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 2439 - 2561
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttta-aa 306  Q
    ||||||| | |||||||| ||| |||||| |  ||||||||  | ||| ||||||| || ||||||||| |||| || ||||||||  ||||||||  ||    
T  2439 aaaattgaccaaaaggatgaaatttgcaatgtagctaaatcgtagggggccaaaatggttgtttttgtacttagggggtcaaaattgcaagttttttgaa 2538  T
Q  307 agttagggg-aaaagtgcacttt 328  Q
    ||||||||| |||||||||||||    
T  2539 agttagggggaaaagtgcacttt 2561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 7062 - 7184
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttta-aa 306  Q
    ||||||| | |||||||| ||| |||||| |  ||||||||  | ||| ||||||| || ||||||||| |||| || ||||||||  ||||||||  ||    
T  7062 aaaattgaccaaaaggatgaaatttgcaatgtagctaaatcgtagggggccaaaatggttgtttttgtacttagggggtcaaaattgcaagttttttgaa 7161  T
Q  307 agttagggg-aaaagtgcacttt 328  Q
    ||||||||| |||||||||||||    
T  7162 agttagggggaaaagtgcacttt 7184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 19615 - 19550
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||| | |||| |||||||| ||||||| || ||||||| | |||| ||||||||||||||||    
T  19615 aaaattgaccaaaatgatcaaagatgcaaaggggttaaatcttaggggatcaaaattgtagttttt 19550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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