View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4669-Insertion-3 (Length: 490)

Name: NF4669-Insertion-3
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4669-Insertion-3
NF4669-Insertion-3
[»] chr1 (5 HSPs)
chr1 (112-489)||(8141838-8142208)
chr1 (7-122)||(8142221-8142337)
chr1 (113-209)||(4931654-4931749)
chr1 (179-263)||(18375038-18375123)
chr1 (7-55)||(7501129-7501177)
[»] chr5 (3 HSPs)
chr5 (331-489)||(22210106-22210265)
chr5 (364-468)||(5351790-5351895)
chr5 (65-122)||(22209802-22209859)
[»] chr2 (3 HSPs)
chr2 (362-489)||(9130602-9130730)
chr2 (63-313)||(9130812-9131066)
chr2 (364-447)||(31037298-31037381)
[»] chr4 (5 HSPs)
chr4 (364-453)||(34730207-34730297)
chr4 (179-256)||(1492102-1492180)
chr4 (73-121)||(1530418-1530466)
chr4 (72-122)||(1492294-1492344)
chr4 (193-256)||(1514798-1514862)
[»] chr7 (1 HSPs)
chr7 (364-449)||(17907155-17907241)
[»] chr3 (6 HSPs)
chr3 (364-441)||(34786053-34786131)
chr3 (364-468)||(20166768-20166873)
chr3 (364-468)||(47652330-47652434)
chr3 (63-122)||(54256587-54256646)
chr3 (278-324)||(47953982-47954028)
chr3 (139-171)||(41514446-41514478)
[»] chr6 (1 HSPs)
chr6 (359-488)||(490848-490982)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 112 - 489
Target Start/End: Complemental strand, 8142208 - 8141838
Alignment:
Q  112 caaatagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgctaacacacaaatagaagttacataaacagaaatttaaaatg 211  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8142208 caaagagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgcgaacacacaaatagaagttacataaacagaaatttaaaatg 8142109  T
Q  212 acttcatataaaacaaaaaatctcaatagttaaacaactagtaaagcatgatatatgcataaattattgcagaaagccattaacagaaattaaaagtgac 311  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8142108 acttcatataaaacaaaaaatctccatagttaaacaactagtaaagcatg----atgcataaattattgcagaaagccattaacagaaattaaaagtgac 8142013  T
Q  312 ttaaaactcaaaaaatctaaataattggtagttttaagttctaatcggtgataaaagatctaattattctcctcttctccaacataatattatcctcatt 411  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  8142012 ttaaaactcaaaaaatctaaataattggtagttttaagttttaatcggtgataaaagatctaattatt---ctcttctccaacataatattatcctcatt 8141916  T
Q  412 ttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatcaatgtcctcaaactctgcttctgattc 489  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8141915 ttcagataatgaggcatatccttcaacttcttcaattgaatcatcggaatcaatgtcctcaaactctgcttctgattc 8141838  T

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Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 8142337 - 8142221
Alignment:
Q  7 actatgtatggcttgaagattgtacttcatctattcttgatatgtaattcctatcgattaatatcggatcgtggaaaatattggattgcca-aaaatcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  8142337 actatgtatggcttgaagattgtacttcatctattcttgatatgtaattcctatctattaatatcggatcgtggaaaatattggattgccaaaaaatcca 8142238  T
Q  106 atatgacaaatagcgga 122  Q
    |||||||||||||||||    
T  8142237 atatgacaaatagcgga 8142221  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 4931654 - 4931749
Alignment:
Q  113 aaatagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgctaacacacaaatagaagttacataaacagaaatttaaaa 209  Q
    |||||| |||| ||||| | ||||| |||||||||||||| |||||||||||||||| |  |||||||||| ||  ||||||| |||||||||||||    
T  4931654 aaatagtggaagctgcacacctgttgaaataaataattatatataaaataaagcatg-ttgcacacaaataaaaactacataaccagaaatttaaaa 4931749  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 18375123 - 18375038
Alignment:
Q  179 aaatagaagttacataaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaagcatgat 263  Q
    ||||| ||| |||||||||||||||| |||||||||| | |||||||  ||||||||||||||| |||||| |  |||||||||||    
T  18375123 aaataaaagctacataaacagaaattaaaaatgacttgacataaaactcaaaatctcaatagttcaaacaaatgataaagcatgat 18375038  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 7501129 - 7501177
Alignment:
Q  7 actatgtatggcttgaagattgtacttcatctattcttgatatgtaatt 55  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||    
T  7501129 actatgtatggcttgaagaatgtacttcatgtattcttgacatgtaatt 7501177  T

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Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 331 - 489
Target Start/End: Original strand, 22210106 - 22210265
Alignment:
Q  331 aataattggtagttttaagttctaatcggtgataaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcata 429  Q
    |||||||||||||| ||||||||||   |||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |    
T  22210106 aataattggtagttctaagttctaactagtgataaaagatatagttattctcctcttccccaacataatcattatcctcattttcagatagtgaggcaca 22210205  T
Q  430 tccttcaacttcttcaattgaatcatcggaatcaatgtcctcaaactctgcttctgattc 489  Q
    ||||||||||||||| |||||||||||  ||||||| |||||||||||| |||| |||||    
T  22210206 tccttcaacttcttctattgaatcatctaaatcaatatcctcaaactctacttccgattc 22210265  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 364 - 468
Target Start/End: Complemental strand, 5351895 - 5351790
Alignment:
Q  364 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatc 462  Q
    |||||||| |||||||||||||||| |||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||| |||||| || |||||    
T  5351895 aaaagatccaattattctcctcttccccaacataatcattatccccatttccacatagtgaggcatatccttcaacttcttcaactgaatcctcagaatc 5351796  T
Q  463 aatgtc 468  Q
    ||||||    
T  5351795 aatgtc 5351790  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 22209802 - 22209859
Alignment:
Q  65 taatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 122  Q
    ||||||| ||||  |||||||||||||| ||||||||||| |||||||||||||||||    
T  22209802 taatatctgatcacggaaaatattggatcgccaaaaatccgatatgacaaatagcgga 22209859  T

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Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 362 - 489
Target Start/End: Complemental strand, 9130730 - 9130602
Alignment:
Q  362 ataaaagatctaattattctcctcttctccaacataata-ttatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaa 460  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||  || |||    
T  9130730 ataaaagatctaattattctcctcttccccaacataataattgtcctcattttcagatagtgaggcatttccgtcaacttcttcaattgaattgtctgaa 9130631  T
Q  461 tcaatgtcctcaaactctgcttctgattc 489  Q
    ||||| |||| ||||||||||||||||||    
T  9130630 tcaatttccttaaactctgcttctgattc 9130602  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 63 - 313
Target Start/End: Complemental strand, 9131066 - 9130812
Alignment:
Q  63 attaatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcggaaactgcaaaactgttcaaataaataattatgtataaaata 162  Q
    |||||||||| |||| |||||||||  ||| ||||||||| | |||||| | |||||| || |  |||||| |||||||||||||||||| |||||||||    
T  9131066 attaatatcgtatcgcggaaaatatcagatcgccaaaaattcgatatgatacatagcgtaagccacaaaacggttcaaataaataattatatataaaata 9130967  T
Q  163 aagcatgctaacacacaaatagaagttacataaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaagcatg 261  Q
    ||||||||| ||| ||||||| ||| ||   ||||||||||| ||||||| || ||||| |||  ||||||||||||||| |||||||||||| | | ||    
T  9130966 aagcatgct-acaaacaaataaaagctaaccaaacagaaattaaaaatgaattgatatacaacttaaaatctcaatagttcaaacaactagtagaacctg 9130868  T
Q  262 ----atatatgcataaattattgcagaaagccattaacagaaattaaaagtgactt 313  Q
        |||  |||| | |||||||||||||||||| | |||||||||||||||||||    
T  9130867 gtgcatagttgcacacattattgcagaaagccataagcagaaattaaaagtgactt 9130812  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 447
Target Start/End: Original strand, 31037298 - 31037381
Alignment:
Q  364 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaat 447  Q
    |||||||||| |||||||| ||||| ||| |||||| ||||||| |||  | |||| ||||||||||||||||||||| ||||||    
T  31037298 aaaagatctatttattctcttcttccccagcataatcattatccacatact-agatcgtgaggcatatccttcaactttttcaat 31037381  T

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Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 364 - 453
Target Start/End: Original strand, 34730207 - 34730297
Alignment:
Q  364 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatc 453  Q
    ||||||||||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  34730207 aaaagatctaattattctcctcttccctaacatcatcattatcctcattttcagatagtgaggcatatccttcaactttttaaatggaatc 34730297  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 1492180 - 1492102
Alignment:
Q  179 aaatagaagttacataaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaa 256  Q
    ||||| ||| ||| |||||||||||| |||||||||| |||||||||  ||||| ||||||||| ||||||||||||||    
T  1492180 aaataaaagctacctaaacagaaattaaaaatgacttgatataaaactcaaaatttcaatagttcaaacaactagtaaa 1492102  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 1530466 - 1530418
Alignment:
Q  73 gatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgg 121  Q
    ||||||||||| ||| |||| |||||||||||||||| |||||||||||    
T  1530466 gatcgtggaaagtatcggatcgccaaaaatccaatataacaaatagcgg 1530418  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 1492344 - 1492294
Alignment:
Q  72 ggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 122  Q
    |||||| ||||||||| |||| ||||||||||| |||| ||||||||||||    
T  1492344 ggatcgcggaaaatataggatcgccaaaaatccgatataacaaatagcgga 1492294  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 1514862 - 1514798
Alignment:
Q  193 taaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaa 256  Q
    ||||||||||||||||||||||| |  | ||||  ||||| ||||||||| ||||||||||||||    
T  1514862 taaacagaaatttaaaatgacttgacgttaaactcaaaatttcaatagttcaaacaactagtaaa 1514798  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 17907155 - 17907241
Alignment:
Q  364 aaaagatctaattattctcctcttctccaacataata-ttatcctcattttcagatagtgaggcatatccttcaacttcttcaattg 449  Q
    |||||||||||||| |||||||||| | ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  17907155 aaaagatctaattactctcctcttcccaaacataataattatcttcattttcagatagtgaggcatatcgttcaacttcttaaattg 17907241  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 364 - 441
Target Start/End: Original strand, 34786053 - 34786131
Alignment:
Q  364 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttc 441  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||| ||||||||||||    
T  34786053 aaaagatctaattattctcctcttccccaacataatcattatcctcattttcagttagttaggcatctccttcaacttc 34786131  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 364 - 468
Target Start/End: Complemental strand, 20166873 - 20166768
Alignment:
Q  364 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatc 462  Q
    |||||||||||||||| |||| ||  | |||||||| ||||||||||||||  |||||||||||||||||||||||||||| ||| ||||| || |||||    
T  20166873 aaaagatctaattattttcctatttcctaacataatcattatcctcattttgcgatagtgaggcatatccttcaacttcttaaatagaatcctcagaatc 20166774  T
Q  463 aatgtc 468  Q
    ||||||    
T  20166773 aatgtc 20166768  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 468
Target Start/End: Original strand, 47652330 - 47652434
Alignment:
Q  364 aaaagatctaattattctcctcttctccaacataata-ttatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatc 462  Q
    ||||||||||| |||||||||||||  |||||||||  ||||| ||||||| ||||||||||||||||||||||||||||| || |||||| | | ||||    
T  47652330 aaaagatctaactattctcctcttccacaacataatcgttatcttcatttttagatagtgaggcatatccttcaacttctt-aaatgaatccttgtaatc 47652428  T
Q  463 aatgtc 468  Q
    ||||||    
T  47652429 aatgtc 47652434  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 54256587 - 54256646
Alignment:
Q  63 attaatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 122  Q
    ||||||| ||||||||||||||||| |||| ||||||||||   ||||| ||||||||||    
T  54256587 attaatagcggatcgtggaaaatatcggatcgccaaaaatctgctatgagaaatagcgga 54256646  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 47953982 - 47954028
Alignment:
Q  278 ttgcagaaagccattaacagaaattaaaagtgacttaaaactcaaaa 324  Q
    |||||||||||||  |||| ||||||||| |||||||||||||||||    
T  47953982 ttgcagaaagccagaaacataaattaaaaatgacttaaaactcaaaa 47954028  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 41514446 - 41514478
Alignment:
Q  139 aaataaataattatgtataaaataaagcatgct 171  Q
    |||||||||||||| ||||||||||||||||||    
T  41514446 aaataaataattatatataaaataaagcatgct 41514478  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 488
Target Start/End: Original strand, 490848 - 490982
Alignment:
Q  359 gtgataaaagatctaattattctcctcttctcc-aacataat-attatcctcatt---ttcagatagtgaggcatatccttcaacttcttcaattgaatc 453  Q
    |||||||||||||||||||| ||||||||| || |||||||| ||||||||| ||   ||||| |  ||| |||||||  ||||||| ||||||||||||    
T  490848 gtgataaaagatctaattatgctcctcttcccccaacataatcattatcctcgttgttttcaggttttgaagcatatctgtcaactttttcaattgaatc 490947  T
Q  454 atcggaatcaatgtcctcaaactctgcttctgatt 488  Q
    | | |||||||| ||||| |||||||||| |||||    
T  490948 acctgaatcaatatcctctaactctgcttttgatt 490982  T

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