View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4669-Insertion-6 (Length: 365)
Name: NF4669-Insertion-6
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4669-Insertion-6 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 365
Target Start/End: Original strand, 1046583 - 1046939
Alignment:
| Q |
8 |
ggaatatggtacaaaatatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttgatc |
107 |
Q |
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| T |
1046583 |
ggaatatggtacaaaa-acatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcaaagacaacaattccaactcaaccatgttgatc |
1046681 |
T |
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| Q |
108 |
ataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttatcaactacaagttctt |
207 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1046682 |
ataagcaacgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttgtcaactacaagttctc |
1046781 |
T |
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| Q |
208 |
atgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaatgattttctatggcaaggttttgattttcc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
1046782 |
atgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttcc |
1046881 |
T |
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| Q |
308 |
ttgtgatactttgttgccagacatgaagcttggatgggacctaaaaatcggtcttaat |
365 |
Q |
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| T |
1046882 |
ttgtgatactttgttgccagacatgaagcttggatgggacctaaaaattggtcttaat |
1046939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 365
Target Start/End: Original strand, 1103613 - 1103969
Alignment:
| Q |
8 |
ggaatatggtacaaaatatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttgatc |
107 |
Q |
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| T |
1103613 |
ggaatatggtacaaaa-atatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcaaagacaacacctccaactcaaccatgttgatc |
1103711 |
T |
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| Q |
108 |
ataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttatcaactacaagttctt |
207 |
Q |
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| T |
1103712 |
atgagcaatgatggaaaccttgaaatacttaccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttctc |
1103811 |
T |
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| Q |
208 |
atgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaatgattttctatggcaaggttttgattttcc |
307 |
Q |
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| T |
1103812 |
atgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttcc |
1103911 |
T |
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| Q |
308 |
ttgtgatactttgttgccagacatgaagcttggatgggacctaaaaatcggtcttaat |
365 |
Q |
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| T |
1103912 |
ttgtgatactttgttgccagacatgaagcttggatgggacctaaaaaccggtcttaat |
1103969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 365
Target Start/End: Original strand, 1071396 - 1071752
Alignment:
| Q |
8 |
ggaatatggtacaaaatatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttgatc |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||| |
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| T |
1071396 |
ggaatatggtacaaaa-atatcccaaaaagaagaatagtttgggttgcaaaccgtgatgatccaatcaaggacaacaactccaactcaaccatgttgatc |
1071494 |
T |
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| Q |
108 |
ataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttatcaactacaagttctt |
207 |
Q |
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|| ||||| || |||||||| | ||||||| |||||||||| |||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |
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| T |
1071495 |
atgagcaaagagggaaaccttgaactacttaccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttctc |
1071594 |
T |
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| Q |
208 |
atgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaatgattttctatggcaaggttttgattttcc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
1071595 |
atgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttcc |
1071694 |
T |
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| Q |
308 |
ttgtgatactttgttgccagacatgaagcttggatgggacctaaaaatcggtcttaat |
365 |
Q |
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| T |
1071695 |
ttgtgatactttgttggcaggcatgaagcatggatgggacttaaaaaccggtcttaat |
1071752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 39 - 365
Target Start/End: Original strand, 1087087 - 1087413
Alignment:
| Q |
39 |
agaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttgatcataagcaatgaaggaaacctagtactacttt |
138 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||| | | ||||| |
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| T |
1087087 |
agaatagtttgggttgcaaaccgtgatgatccaatcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaaaccttgaaatactta |
1087186 |
T |
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| Q |
139 |
ccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttatcaactacaagttcttatgttgctcaactattagacaatggaaactt |
238 |
Q |
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| T |
1087187 |
ccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactt |
1087286 |
T |
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| Q |
239 |
tgtaatcaaagccaacaacaatactgatcaacaaagtaatgattttctatggcaaggttttgattttccttgtgatactttgttgccagacatgaagctt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1087287 |
tgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccagacatgaagctt |
1087386 |
T |
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| Q |
339 |
ggatgggacctaaaaatcggtcttaat |
365 |
Q |
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| T |
1087387 |
ggatgggacctaaaaaccggtcttaat |
1087413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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