View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4669-Insertion-8 (Length: 322)

Name: NF4669-Insertion-8
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4669-Insertion-8
NF4669-Insertion-8
[»] chr2 (1 HSPs)
chr2 (8-322)||(32557395-32557709)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 32557395 - 32557709
Alignment:
Q  8 catactcctcatctgggttgtaagcatgctacaaacatgatnnnnnnnnnnnnnnnntgtattgacaactctcttaacagaggctggttcctctttacaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||| |||||||    
T  32557395 catactcctcatctgggttgtaagcatgctacaaacatgataaaaaacaaagaaaaatgtattgacaactctcttaacagaggctggttcctttttacaa 32557494  T
Q  108 gataatactgcaagccagaaataattaaaatggtaacgcaatacccttggcaagatgatcaataacaaaacagaaaaggataaacccaatcttgaaagag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557495 gataatactgcaagccagaaataattaaaatggtaacgcaatacccctggcaagatgatcaataacaaaacagaaaaggataaacccaatcttgaaagag 32557594  T
Q  208 aactaatactatacccgaataaatactcattctccccccactgcattcaggattcccacatctctttcctactctctcactccttgcttgccacctattc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557595 aactaatactatacccgaataaatactcattctccccccactgcattcaggattcccacatctctttcctactctctcactccttgcttgccacctattc 32557694  T
Q  308 ccttctcctctcata 322  Q
    |||||||||||||||    
T  32557695 ccttctcctctcata 32557709  T

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