View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4669-Insertion-9 (Length: 317)
Name: NF4669-Insertion-9
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4669-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 317
Target Start/End: Original strand, 7685740 - 7686050
Alignment:
| Q |
7 |
aaatgagcctcaccacctaacacatgatccatcaacagaatgttaagcctccaaattttcttgaagaaggcatcaagccaatcacaatgttttcatttag |
106 |
Q |
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| T |
7685740 |
aaatgagcctcaccacctaacacatgatccatcaacagaatgttaagcctccaagttttcttgaagaaggcatcaagccaatcacaatgttttcatttag |
7685839 |
T |
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| Q |
107 |
tctatcaaaatctaaaactattcaaaataatttaaaatttatgtcaagcagaaatactatctttttaatacactctcctattagttaaatttcatatgaa |
206 |
Q |
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| T |
7685840 |
tctatcagaatctaaaactattcaaaataatttaaaatttatgtcaagcggaaatactatctttttaatacactctcctattagttaaatttcatatgaa |
7685939 |
T |
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| Q |
207 |
tctccaagagtgtattgctagaatttgtaatcgtaccagggaaggtaagaagatcaggatctccaacgtaaaagtcaaacttgtctttatctttgtcaaa |
306 |
Q |
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| T |
7685940 |
tctccaagagtgtattgctagaatttgtaatcgtaccagggaaggtaagaagatcaggatctccaacgtaaaagtcaaacttgtctttatctttgtcaaa |
7686039 |
T |
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| Q |
307 |
gataagtctct |
317 |
Q |
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||||||||||| |
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| T |
7686040 |
gataagtctct |
7686050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 13885973 - 13886061
Alignment:
| Q |
229 |
atttgtaatcgtaccagggaaggtaagaagatcaggatctccaacgtaaaagtcaaacttgtctttatctttgtcaaagataagtctct |
317 |
Q |
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| T |
13885973 |
atttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctct |
13886061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 14026098 - 14026186
Alignment:
| Q |
229 |
atttgtaatcgtaccagggaaggtaagaagatcaggatctccaacgtaaaagtcaaacttgtctttatctttgtcaaagataagtctct |
317 |
Q |
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| T |
14026098 |
atttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctct |
14026186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 13885683 - 13885774
Alignment:
| Q |
7 |
aaatgagcctcaccacctaa-cacatgatccatcaacagaatgttaagcctccaaattttcttgaagaaggcatcaagccaatcacaatgtt |
97 |
Q |
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| T |
13885683 |
aaatgagcctcaccacctaaacacatgttccatcaacagattgtcaagtctccaaattttcttacagaagataccaagtcaatcacaatgtt |
13885774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 14025808 - 14025899
Alignment:
| Q |
7 |
aaatgagcctcaccacctaa-cacatgatccatcaacagaatgttaagcctccaaattttcttgaagaaggcatcaagccaatcacaatgtt |
97 |
Q |
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|||||||||||||||||||| |||||| |||||||||||| ||| ||| |||||||||||||| ||||| | |||| ||||||||||||| |
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| T |
14025808 |
aaatgagcctcaccacctaaacacatgttccatcaacagattgtcaagtctccaaattttcttacagaagataccaagtcaatcacaatgtt |
14025899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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