View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4669_high_2 (Length: 551)
Name: NF4669_high_2
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4669_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 155 - 541
Target Start/End: Original strand, 36057132 - 36057518
Alignment:
| Q |
155 |
tacataagatgaagagtcatcaaggtcatttttagatgcatgattttggacttgttagttatcaattgtcaccaagggcagaatgccttgccggcaatgc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057132 |
tacataagatgaagagtcatcaaggtcatttttagatgcatgattttggacttgttagttatcaattgtcaccaagggcagaatgccttgccggcaatgc |
36057231 |
T |
|
| Q |
255 |
tgagaatccatatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggctcgattcctgagagcgaaagtttcaaaaagttcttttaaac |
354 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057232 |
tgagaatccatacgtgcctcgtaattatcaagagatccatacctgaagtgattaggggttcgattcctgagagcgaaagtttcaaaaagttcttttaaac |
36057331 |
T |
|
| Q |
355 |
cacatagcaattctttttcaagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataaggga |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057332 |
cacatagcaattctttttcaagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataaggga |
36057431 |
T |
|
| Q |
455 |
gtacttatagaaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttgcctttg |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36057432 |
gtacttatagaaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttggctttg |
36057518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 36056980 - 36057026
Alignment:
| Q |
19 |
tccaaaacagtgtaggggccttctggctaaattatacattttcacca |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36056980 |
tccaaaacagtgtaggggccttctggctaaattatacattttcacca |
36057026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 432 - 531
Target Start/End: Original strand, 28723708 - 28723808
Alignment:
| Q |
432 |
aaaggtaaatgaaacataagggagtacttatag-aaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgc |
530 |
Q |
| |
|
||||||||| | ||||||||||||||| ||| | ||||||||||||||||||||||||||||| || |||||||||| ||| |||||| || ||||||| |
|
|
| T |
28723708 |
aaaggtaaagggaacataagggagtacatattggaaatgtctaatctcgcatcaaaactcaaggcactgaagttagaacttcctgaagatttaattgtgc |
28723807 |
T |
|
| Q |
531 |
a |
531 |
Q |
| |
|
| |
|
|
| T |
28723808 |
a |
28723808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 535
Target Start/End: Complemental strand, 23070502 - 23070341
Alignment:
| Q |
374 |
aagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagggagtacttat-agaaatgtct |
472 |
Q |
| |
|
||||||||||||||||| | |||| |||||||| || || |||||||||| | | ||||||||| | ||||||||||| ||| | | |||||||||| |
|
|
| T |
23070502 |
aagaatgataaggttgaaactagtattgttttatccaaacttatttcaatgagct-acaaaggtaaagggaacataagggaatacatcttagaaatgtct |
23070404 |
T |
|
| Q |
473 |
aatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttg |
535 |
Q |
| |
|
||||| || | ||||||||| || ||| ||||| ||| |||||| || |||||||||||| |
|
|
| T |
23070403 |
aatcttgccttcaaactcaaggcacggaatttagaacttcttgaagatttaattgtgcacttg |
23070341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 25461738 - 25461788
Alignment:
| Q |
265 |
tatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggctc |
315 |
Q |
| |
|
|||||||||| | |||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
25461738 |
tatgtgcctcatgattatcaaaatatccatacctgaaatgattaggggctc |
25461788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University