View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4669_high_3 (Length: 442)

Name: NF4669_high_3
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4669_high_3
NF4669_high_3
[»] chr8 (6 HSPs)
chr8 (175-429)||(43893690-43893946)
chr8 (270-429)||(44304225-44304384)
chr8 (194-377)||(44294505-44294690)
chr8 (22-181)||(44303042-44303216)
chr8 (168-274)||(44303347-44303453)
chr8 (22-181)||(43893382-43893552)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 175 - 429
Target Start/End: Original strand, 43893690 - 43893946
Alignment:
Q  175 tcatcatcctgcaaccaggaaatctcacctacatagaaattaaggcaaaaactagaatactcctcaccatccaccc--tttaattcaaatattcagtaca 272  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  43893690 tcatcatcctgcaacaaggaaatctcacatacatagaaattaaggtaaaaactagaatactcctcaccatccaccccctttaattcaaatattcagtaca 43893789  T
Q  273 tcaaatcaaaattatgaacaactcatactctcatgaagacttcgtaaagtgcacatatgcagtttcttcacactctagtcatggcaatacctgatttttc 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43893790 tcaaatcaaaattatgaacaactcatactctcatgaagacttcgtaaagtgcacatatgcagtttctttacactctagtcatggcaatacctgatttttc 43893889  T
Q  373 attctccattatattaacaccaaaacaacagagggagaagcatcacgaagacattac 429  Q
    ||||| || |||||||||||| ||||||||||||||| |||||||||||| ||||||    
T  43893890 attcttcactatattaacacctaaacaacagagggagcagcatcacgaaggcattac 43893946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 270 - 429
Target Start/End: Original strand, 44304225 - 44304384
Alignment:
Q  270 acatcaaatcaaaattatgaacaactcatactctcatgaagacttcgtaaagtgcacatatgcagtttcttcacactctagtcatggcaatacctgattt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44304225 acatcaaatcaaaattatgaacaactcatactctcatgaagacttcgtaaagtgcacatatgcagtttcttcacactctagtcatggcaatacctgattt 44304324  T
Q  370 ttcattctccattatattaacaccaaaacaacagagggagaagcatcacgaagacattac 429  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44304325 ttcattctccattatattaacaccaaaacaacagagggagcagcatcacgaagacattac 44304384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 194 - 377
Target Start/End: Original strand, 44294505 - 44294690
Alignment:
Q  194 aaatctcacctacatagaaattaaggcaaaaactagaatactcctcaccatccaccct--ttaattcaaatattcagtacatcaaatcaaaattatgaac 291  Q
    ||||||||| |||||||||||||| | |||||||||||||||| |||||||| || ||  |||||||||||||||||||||||||||| |||||||||||    
T  44294505 aaatctcacatacatagaaattaatgtaaaaactagaatactcttcaccatctactctccttaattcaaatattcagtacatcaaatctaaattatgaac 44294604  T
Q  292 aactcatactctcatgaagacttcgtaaagtgcacatatgcagtttcttcacactctagtcatggcaatacctgatttttcattct 377  Q
    | |||| ||||||||||||||| | |||||||||||||  ||||||||||||||||| ||  ||||||||||||||||||||||||    
T  44294605 atctcacactctcatgaagactccataaagtgcacatactcagtttcttcacactctggttgtggcaatacctgatttttcattct 44294690  T

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Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 44303042 - 44303216
Alignment:
Q  22 tataataagtaactagaagagatacatacatctgcaacaaaccagtagcaattaattaggatatatgttccttagctccttcatttgatc---------- 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||  ||||||              
T  44303042 tataataagtaactagaagagatacacacatctgcaacaaaccagtagcaactaattaggatatgtgttccttaggtccttctattgatccttattgcac 44303141  T
Q  112 -----caatggtaggagaataagcaattaacaagttccaacctgttagtaccaaaacaccaaaatacctcatcat 181  Q
         ||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||    
T  44303142 tttttcaaaggtaggagaataagcaattaaaaagttccaacccattagtaccaaaacaccaaaatagctcatcat 44303216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 44303347 - 44303453
Alignment:
Q  168 aaatacctcatcatcctgcaaccaggaaatctcacctacatagaaattaaggcaaaaactagaatactcctcaccatcca--ccctttaattcaaatatt 265  Q
    ||||| |||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||    
T  44303347 aaatagctcatcatcctgcaacaaggaaatctca--tacatagaaattaaggcaaaaactagaatactcctcacaatccaccccctttaattcaaatatt 44303444  T
Q  266 cagtacatc 274  Q
    || ||||||    
T  44303445 cactacatc 44303453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 43893382 - 43893552
Alignment:
Q  22 tataataagtaactagaagagatacatacatctgcaacaaaccagtagcaattaattaggatatatgttccttagctccttcatttgatc---------- 111  Q
    |||||||||||||||||||||||||    |||||||||||||||||||| | |||||||||||| |||||||||| |||||| |||||||              
T  43893382 tataataagtaactagaagagatac----atctgcaacaaaccagtagccactaattaggatatgtgttccttaggtccttcttttgatccttattgcac 43893477  T
Q  112 -----caatggtaggagaataagcaattaacaagttccaacctgttagtaccaaaacaccaaaatacctcatcat 181  Q
         ||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||    
T  43893478 tttttcaaaggtaggagaataagcaattaaaaagttccaacccattagtaccaaaacaccaaaatagctcatcat 43893552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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