View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4669_high_5 (Length: 390)
Name: NF4669_high_5
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4669_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 45 - 376
Target Start/End: Complemental strand, 41637995 - 41637664
Alignment:
| Q |
45 |
acatatgacaatcaatagcaacagcaacatgaaatgctcgtggagtgggacccacatgtccatctgaatcacttccagtacactccggttgataccatag |
144 |
Q |
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| T |
41637995 |
acatatgacaatcaatagcaacagcaacatgaaatgctcgtggagtgggacccacatgtccatctgaatcacttccagtacactccggttgataccatag |
41637896 |
T |
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| Q |
145 |
cttagcctctgaaaatttcaacattacaaaacgaatcaaattccaaattttgacaacaacccacaaaagaagagagaaaagggtcactaaccaatatcat |
244 |
Q |
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| T |
41637895 |
cttagcctctgaaaatttcaacattacaaaacgaatcaaattccaaattttgacaacaacccacaaaagaagagagaaaagggtcactaaccaatatcat |
41637796 |
T |
|
| Q |
245 |
agacaagaatatcagtgagaaattttttgtcgacaagaccaccgaagatgacaaccttggattttccaatattaacagcggaatgaccactacgaggttg |
344 |
Q |
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| T |
41637795 |
agacaagaatatcagtgagaaattttttgtcgacaagaccaccgaagacgacaaccttggattttccaatattaacagcggaatgaccactacgaggttg |
41637696 |
T |
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| Q |
345 |
aggaggtgttcctgcgtaatcagatgatgatg |
376 |
Q |
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| T |
41637695 |
aggaggtgttcctgcgtaatcagatgatgatg |
41637664 |
T |
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