View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4669_high_8 (Length: 239)

Name: NF4669_high_8
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4669_high_8
NF4669_high_8
[»] chr1 (4 HSPs)
chr1 (9-239)||(34975475-34975705)
chr1 (9-239)||(34989310-34989540)
chr1 (9-235)||(34980259-34980485)
chr1 (9-223)||(2305628-2305842)
[»] chr3 (15 HSPs)
chr3 (9-235)||(22657209-22657435)
chr3 (9-239)||(22621057-22621287)
chr3 (16-232)||(22648309-22648524)
chr3 (166-235)||(22615559-22615628)
chr3 (111-213)||(22187107-22187209)
chr3 (112-213)||(22028119-22028220)
chr3 (112-211)||(22179538-22179637)
chr3 (177-235)||(22208117-22208175)
chr3 (137-213)||(22034636-22034712)
chr3 (168-211)||(22115206-22115249)
chr3 (168-233)||(21937252-21937317)
chr3 (112-209)||(22458735-22458832)
chr3 (112-209)||(22481716-22481813)
chr3 (168-211)||(30989607-30989650)
chr3 (9-87)||(21930666-21930744)
[»] chr4 (1 HSPs)
chr4 (111-197)||(29610815-29610902)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 34975705 - 34975475
Alignment:
Q  9 acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34975705 acatcatcaaacacaaaaacatacctctttttctgcaagtactttctcaactcagaaatcaatgcacctcgatccatttcagtgattcctttaggaggtt 34975606  T
Q  109 tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg 208  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34975605 tttctcctttttgtccgtaaagcttctccaacatgtgtctcgacaatacttcagtgttgtgtgattgtgacactgtgatccatacacgacattcaaagtg 34975506  T
Q  209 tcccacaacctctttgctatcaaaaaccttt 239  Q
    |||||||||||||||||||||||||||||||    
T  34975505 tcccacaacctctttgctatcaaaaaccttt 34975475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 34989540 - 34989310
Alignment:
Q  9 acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34989540 acatcatcaaacacaaaaacatacctctttttctgcaagtactttctcaactcagaaatcaatgcacctcgatccatttcagtgattcctttaggaggtt 34989441  T
Q  109 tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg 208  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34989440 tttctcctttttgtccgtaaagcttctccaacatgtgtctcgacaatacttcagtgttgtttgattgtgacactgtgatccatacacgacattcaaagtg 34989341  T
Q  209 tcccacaacctctttgctatcaaaaaccttt 239  Q
    |||||||||||||||||||||||||||||||    
T  34989340 tcccacaacctctttgctatcaaaaaccttt 34989310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 34980485 - 34980259
Alignment:
Q  9 acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt 108  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||  ||| | |||| |    
T  34980485 acatcatcaaacacaaaaacatacctctttttctgcaagtaatttctcaactcataaatcaatgcatctcgatccatttcagtgatatcttcaagaggat 34980386  T
Q  109 tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg 208  Q
     |||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  34980385 gttctcctttttgttcgtaaagcttcttcaacatgcgtctcagcaatacttcaatattgtatgattgtgacactgtgatccatacacgacattcaaagtg 34980286  T
Q  209 tcccacaacctctttgctatcaaaaac 235  Q
    |||||||||||||||||||||||||||    
T  34980285 tcccacaacctctttgctatcaaaaac 34980259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 2305628 - 2305842
Alignment:
Q  9 acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt 108  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||  |||  ||||| |  |      
T  2305628 acattatcaaacacaaaaacatacctcttattctgcaagtactttctcaactcaaaaatcaattcacctcgatccatttcatagatatctttaggtagaa 2305727  T
Q  109 tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg 208  Q
     |||| |||||||||||| |||||||| |||||||  ||||| ||| |||||  | |||||||||||||||| |||||||||||||||||||||||||||    
T  2305728 attctactttttgttcgtgaagcttcttcaacatgcatctcaacaagacttctatattgtatgattgtgacattgtgatccatacacgacattcaaagtg 2305827  T
Q  209 tcccacaacctcttt 223  Q
    |||||||||||||||    
T  2305828 tcccacaacctcttt 2305842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 22657209 - 22657435
Alignment:
Q  9 acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt 108  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||  ||| | |||| |    
T  22657209 acatcatcaaacacaaaaacatacctctttttctgcaagtattttctcagctcagaaatcaatgcgcctcgatccatttcagtgatatcttgaggaggat 22657308  T
Q  109 tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg 208  Q
    | ||||||||||||| |||||||| || ||||||| |||||| ||| |||||  | ||||| |||||||||||||||||||| |||||||||||||||||    
T  22657309 tgtctcctttttgtttgtaaagctccttcaacatgcgtctcaacaacacttctatattgtaagattgtgacactgtgatccaaacacgacattcaaagtg 22657408  T
Q  209 tcccacaacctctttgctatcaaaaac 235  Q
    ||| |||||||||||||| ||||||||    
T  22657409 tccaacaacctctttgctgtcaaaaac 22657435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 22621057 - 22621287
Alignment:
Q  9 acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt 108  Q
    ||||||||||| ||||||| |||||||||||  |||||||  ||| |||||| |||||||||||  ||| |||||||||||| |||  ||| |  ||| |    
T  22621057 acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt 22621156  T
Q  109 tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg 208  Q
      ||||||||||||| ||||| || || |||||||| |||||||||  | ||  | | |||||||||||||||||||| |||||||||| |||| |||||    
T  22621157 cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatatcgtatgattgtgacactgtgacccatacacgatattcgaagtg 22621256  T
Q  209 tcccacaacctctttgctatcaaaaaccttt 239  Q
    |||||  ||||||||||| || |||||||||    
T  22621257 tcccatgacctctttgctgtcgaaaaccttt 22621287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 22648309 - 22648524
Alignment:
Q  16 caaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtttttctcc 115  Q
    ||||||| |||| |||||||||||  |||||||| ||| ||| |||||||||||| |  |||| ||||||||  | ||| |||||| |||| | ||||||    
T  22648309 caaacacgaaaacatacctcttttgttgcaagtagtttctcagctcagaaatcaacgaccctc-atccattttcgagatacctttaggaggctcttctcc 22648407  T
Q  116 tttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtcccaca 215  Q
    |||||||| ||||||||  | |||||||  |||||||||  |||| || | |||||||||  ||||| |||||||||||||| |||||||||||||| |     
T  22648408 tttttgtttgtaaagctcattcaacatgcctctcagcaacccttctgtatagtatgattgcaacactttgatccatacacgaaattcaaagtgtcccgct 22648507  T
Q  216 acctctttgctatcaaa 232  Q
    ||||||||||| |||||    
T  22648508 acctctttgctgtcaaa 22648524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 22615559 - 22615628
Alignment:
Q  166 tgtatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaac 235  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||   |||||| ||||||||||||||    
T  22615559 tgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 22615628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 22187209 - 22187107
Alignment:
Q  111 tctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtc 210  Q
    ||||||||||||| | ||| |||   |||||||| ||||| |||| ||||||  || |||||||| |||||||| |||||||||||||| ||||||||||    
T  22187209 tctcctttttgtttgcaaacctttagcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgtc 22187110  T
Q  211 cca 213  Q
    |||    
T  22187109 cca 22187107  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 22028220 - 22028119
Alignment:
Q  112 ctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtcc 211  Q
    |||||||||||| | ||| |||   |||||||| ||||| |||| ||||||  || |||||||| |||||||| |||||||||||||| |||||||||||    
T  22028220 ctcctttttgtttgcaaacctttagcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgtcc 22028121  T
Q  212 ca 213  Q
    ||    
T  22028120 ca 22028119  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 22179637 - 22179538
Alignment:
Q  112 ctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtcc 211  Q
    |||||||||||| | ||| |||   |||||||| ||||| |||| ||||||  || |||||||| |||||||| |||||||||||||| |||||||||||    
T  22179637 ctcctttttgtttgcaaatctttagcaacatgtctctcaacaatccttcagcattatatgattgagacactgtaatccatacacgacaatcaaagtgtcc 22179538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 22208175 - 22208117
Alignment:
Q  177 gacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaac 235  Q
    ||||||||||||||||||||||| ||||||| ||| | |||||||||||| ||||||||    
T  22208175 gacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaac 22208117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 22034712 - 22034636
Alignment:
Q  137 caacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtccca 213  Q
    |||||||| ||||| |||| ||||||  || |||||||| |||||||| |||||||||||| | |||||||||||||    
T  22034712 caacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgataatcaaagtgtccca 22034636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 22115249 - 22115206
Alignment:
Q  168 tatgattgtgacactgtgatccatacacgacattcaaagtgtcc 211  Q
    |||||||| ||||||||||||||||||||||| |||||||||||    
T  22115249 tatgattgagacactgtgatccatacacgacaatcaaagtgtcc 22115206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 21937317 - 21937252
Alignment:
Q  168 tatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaa 233  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||| || || || ||||| ||||||    
T  21937317 tatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaa 21937252  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 22458735 - 22458832
Alignment:
Q  112 ctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgt 209  Q
    |||||| ||||||||||| ||| | || |||||  ||||||||  ||||  | ||||||||||| |||||| ||||||||||| |||| |||||||||    
T  22458735 ctccttgttgttcgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 22458832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 22481716 - 22481813
Alignment:
Q  112 ctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgt 209  Q
    |||||| ||||||||||| ||| | || |||||  ||||||||  ||||  | ||||||||||| |||||| ||||||||||| |||| |||||||||    
T  22481716 ctccttgttgttcgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 22481813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 30989607 - 30989650
Alignment:
Q  168 tatgattgtgacactgtgatccatacacgacattcaaagtgtcc 211  Q
    |||||||| |||||| |||||||||||||||| |||||||||||    
T  30989607 tatgattgagacactatgatccatacacgacaatcaaagtgtcc 30989650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 21930744 - 21930666
Alignment:
Q  9 acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccattt 87  Q
    |||||||||||||| | || ||||||||||||||||||| | ||| |||  |||| | ||||||  |||||||||||||    
T  21930744 acatcatcaaacacgacaacatacctctttttctgcaagcattttctcacttcagcagtcaatgatcctcgatccattt 21930666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 29610815 - 29610902
Alignment:
Q  111 tctcctttttgttcgtaaag-cttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacga 197  Q
    ||||| ||||||| |||||  |||||||||||||   || |||||| ||||  | |||||||||||||| ||||||||||||||||||    
T  29610815 tctcccttttgtttgtaaaaacttctccaacatgccccttagcaatccttctatattgtatgattgtgatactgtgatccatacacga 29610902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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