View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4669_low_1 (Length: 866)
Name: NF4669_low_1
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4669_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 409 - 855
Target Start/End: Complemental strand, 41637350 - 41636908
Alignment:
| Q |
409 |
aactaaattatcaattttcttgcaacttcgaccgacaacgccacaaactttgcaagacttaatggatttgaggaaaatttatttcgtctaacaaaaatat |
508 |
Q |
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| T |
41637350 |
aactaaattatcaattttcttgcgacttcgaccgacaacgccacaaactttgcaagacttaatggatttgaggaagatttatttggtctaacaaaaatat |
41637251 |
T |
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| Q |
509 |
gttttgaatttagttttgtaaatgcactagtgttaaatctctctttactcccttatgcgattcatccgatttaaggaattagttctacattgacgcaaga |
608 |
Q |
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| T |
41637250 |
gttttgaatttagttt-gtaaatgcactagtgttaaatctctctttactcccttatgctattcatccgatttaaggaactagttctacattgacgcaaga |
41637152 |
T |
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| Q |
609 |
aaatggttgacaccaaaaatgaatgaaaagaaaggagagaaacgataatattttnnnnnnnnnttgatatcagagaattaattctagtggtctgatctca |
708 |
Q |
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| T |
41637151 |
aaatggttgacaccaaaaatgaatgaaaagaaaggagagaaacgataatatttt-taaaaaatttgatatctgagaattaattctagtggtctgatctca |
41637053 |
T |
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| Q |
709 |
ctaaaaataagcaaaattttgtatgctctaaccttatctttttattttgacaatcgaacttgaaacattaagatgaaatgacttaattgagatgagaaat |
808 |
Q |
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| T |
41637052 |
ttaaaaataagcaaaattttgtatgctttaaccttatctttttatttttacaatcgaacttgaaacattaagataaaatgacttaattgagacgagaaat |
41636953 |
T |
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| Q |
809 |
gaatgagaatgtaagaaggtgggatgtcggttgggtagatgatgtcc |
855 |
Q |
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| T |
41636952 |
gaatgagaatgtaagaaggtggg--gtcggttgggtaaatgatgtcc |
41636908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 41637434 - 41637392
Alignment:
| Q |
50 |
aggagtgtttgactaagaagttaaaaaacgaattgttcctttt |
92 |
Q |
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| T |
41637434 |
aggagtgtttgactaagaagttaaaaaacgaattgatcctttt |
41637392 |
T |
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