View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4669_low_6 (Length: 319)
Name: NF4669_low_6
Description: NF4669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4669_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 36188278 - 36188560
Alignment:
| Q |
18 |
cacagaggaaattactgcaagaaaaagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188278 |
cacagaggaaattactgcaagaaaaagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
36188377 |
T |
|
| Q |
118 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188378 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
36188477 |
T |
|
| Q |
218 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188478 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagat |
36188560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 36196595 - 36196878
Alignment:
| Q |
18 |
cacagaggaaattactgcaagaaaaaggg-aaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatct |
116 |
Q |
| |
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|||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196595 |
cacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatct |
36196694 |
T |
|
| Q |
117 |
tagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196695 |
tagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatc |
36196794 |
T |
|
| Q |
217 |
tctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196795 |
tctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagat |
36196878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 36209719 - 36209988
Alignment:
| Q |
18 |
cacagaggaaattactgcaagaaa-aagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatct |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36209719 |
cacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaaaatct |
36209818 |
T |
|
| Q |
117 |
tagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatc |
216 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
36209819 |
tagttcatctataactgcaaa-gcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttcatcatc |
36209917 |
T |
|
| Q |
217 |
tctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgct |
295 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
36209918 |
tctgctacaaacgctcttgttggaagaaaatcatgccatgtctct--------tatcaatttatgaaccttcatttgct |
36209988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 83 - 290
Target Start/End: Original strand, 36207688 - 36207896
Alignment:
| Q |
83 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaa |
181 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||||||||||| || | | ||||| ||| | | |||||||||||||||||||||||||||||| | | |
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|
| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaat-cacatgtgaacctctaatctctccaacatggtgttttcgata |
36207786 |
T |
|
| Q |
182 |
cgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagag-aatcatgtcatgtctctcacaattgtatcaatttat |
280 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| || | ||| | || |||||||||| ||||||||||||||||| | |||||||| ||||||| |
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| T |
36207787 |
tgatgtgcatgtttggacttcaaattttcatcaactctacttctaacacactggttggaagagaaatcatgtcatgtctctgataattgtattaatttat |
36207886 |
T |
|
| Q |
281 |
gaaccttcat |
290 |
Q |
| |
|
||||||||| |
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|
| T |
36207887 |
caaccttcat |
36207896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 83 - 290
Target Start/End: Original strand, 36184500 - 36184712
Alignment:
| Q |
83 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
177 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | ||| ||||||||||||||||||||||| ||| |
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|
| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
36184598 |
T |
|
| Q |
178 |
caaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaag-agaatcatgtcatgtctctcacaattgtatcaat |
276 |
Q |
| |
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| | ||| | ||||||||||||| ||||||||||| ||||||| | ||| |||| |||||||| | ||||||||||||||||| | |||||||||| | |
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| T |
36184599 |
cgtatgatattcatgtttggacttcagattttcatcaactctgcttctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcact |
36184698 |
T |
|
| Q |
277 |
ttatgaaccttcat |
290 |
Q |
| |
|
|||| ||||||||| |
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| T |
36184699 |
ttatcaaccttcat |
36184712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 176 - 292
Target Start/End: Original strand, 36202310 - 36202426
Alignment:
| Q |
176 |
tccaaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaa |
275 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||||||||||||||||||| |||||||||| || ||||||| |||| |||||||||| ||||||||||||| |
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|
| T |
36202310 |
tccaaactatgttcatgtttcgacttcagattttcatcatctctgcttcaaacgctctagtaagaagagattcatttcatgtctctgacaattgtatcaa |
36202409 |
T |
|
| Q |
276 |
tttatgaaccttcattt |
292 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
36202410 |
tttatgaaccttcattt |
36202426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 293
Target Start/End: Original strand, 36213218 - 36213328
Alignment:
| Q |
183 |
gatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatga |
282 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||| ||||| || | ||| ||||||||||||||||||||||| | ||||| |||||||||||| |
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|
| T |
36213218 |
gatgtgcatgtttggacttcaaatttttatcaactctgcttcaaacactttagtttgaagagaatcatgtcatgtctctgataattgaatcaatttatga |
36213317 |
T |
|
| Q |
283 |
accttcatttg |
293 |
Q |
| |
|
|||||||||| |
|
|
| T |
36213318 |
gccttcatttg |
36213328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 36198878 - 36198958
Alignment:
| Q |
120 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
201 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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|
| T |
36198878 |
ttcatctataccta-aaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagactt |
36198958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 108 - 293
Target Start/End: Original strand, 36200857 - 36201042
Alignment:
| Q |
108 |
acaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgatt |
207 |
Q |
| |
|
|||||||||||||||||||| ||| ||| | |||| | |||||| |||||| ||||||||||||| |||||| | |||||||||||||| ||| || |
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|
| T |
36200857 |
acaaaatcttagttcatctacaccaacaca-gcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttgaactacaagtt |
36200955 |
T |
|
| Q |
208 |
ttcatcatctctgctacaaacgctcttgttggaagag-aatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttg |
293 |
Q |
| |
|
||| ||| ||||||| ||||| ||| || |||| || |||||| |||||||||| | || ||| ||||||||||||| ||||||| |
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|
| T |
36200956 |
ttcgtcaactctgcttcaaacagtctagtaggaaaagaaatcatatcatgtctctgataactgtgtcaatttatgaactgtcatttg |
36201042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 36214722 - 36214833
Alignment:
| Q |
109 |
caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattt |
208 |
Q |
| |
|
|||| ||||| || ||||||||| ||||| |||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||||||||| |||| |
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| T |
36214722 |
caaagtcttaattgatctataccaacaaa-gcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaattt |
36214820 |
T |
|
| Q |
209 |
tcatcatctctgc |
221 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
36214821 |
tcaccatctctgc |
36214833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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