View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4670-Insertion-1 (Length: 582)
Name: NF4670-Insertion-1
Description: NF4670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4670-Insertion-1 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Complemental strand, 54277370 - 54276796
Alignment:
| Q |
8 |
tagtccaccgttttttacaatgaaggagaatgcatagtccattagacccccattgcaaccattgttgtaagttgtgtcacagtcgattaattcttgctcg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54277370 |
tagtccaccgttttttacaatgaaggagaatgcatagtccattagacccccattgcaaccattgttgtaagttgtgtcacagtcgattaattcttgctcg |
54277271 |
T |
|
| Q |
108 |
gacaaagatgtcaaattccctgtcacaatttggtttattccttcaaccgcagcaacagtcgaaaatgcccagcaactacctgcaagtactcgtgttcata |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54277270 |
gacaaagatgtcaaattccctgtcacaatttggtttattccttcaaccgcagcaacagtcgaaaatgcccagcaactacctgcaagtactcgtgttcata |
54277171 |
T |
|
| Q |
208 |
tcaccatgttaatatacttgcaaactatttcatgacaaaactatacgaatagattttcgtatacttaccacattgaccttgattcttgaccggggttaca |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54277170 |
tcaccatgttaatatacttgcaagctatttcaggacaaaactatacgaatagattttcgtatacttaccacattgaccttgattcttgaccggggttaca |
54277071 |
T |
|
| Q |
308 |
gcacctttctttctccaatcaactgacttaggcaaatcaacatctctataagtgaattcttcttctgaggactctctcctttgagacaagtcaactttta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54277070 |
gcacctttctttctccaatcaactgacttaggcaaatcaacatctctataagtgaattcttcttctgaggactctctcctttgagacaagtcaactttta |
54276971 |
T |
|
| Q |
408 |
gcccaagatacttgttcttgaactcttgatggctcaaatcagcaaactcattcaaaccaagccagtagttgctgacaaccttgttcctatcatcaatgtg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54276970 |
gcccaagatacttgttcttgaactcttgatggctcaaatcagcaaactcattcaaaccaagccagtagttgctgacaaccttgttcctatcatcaatgtg |
54276871 |
T |
|
| Q |
508 |
ctttagattatccttaaagacctcgaacctgagtagcttttcttcaatggtctcataaatcttgccgtgtctcga |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54276870 |
ctttagattatccttaaagacctcgaacctgagtagcttttcttcaatggtctcataaatcttgccgtgtctcga |
54276796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 34312492 - 34312551
Alignment:
| Q |
271 |
cttaccacattgaccttgattcttgaccggggttacagcacctttctttctccaatcaac |
330 |
Q |
| |
|
|||||||||||| ||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
34312492 |
cttaccacattggccttgatccttgacatcagtgacagcacctttctttctccaatcaac |
34312551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 30720120 - 30720182
Alignment:
| Q |
270 |
acttaccacattgaccttgattcttgaccggggttacagcacctttctttctccaatcaactg |
332 |
Q |
| |
|
||||||||||||||||||| ||||| || || ||||| || ||||||||||||||||| |||| |
|
|
| T |
30720120 |
acttaccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactg |
30720182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 30881239 - 30881177
Alignment:
| Q |
270 |
acttaccacattgaccttgattcttgaccggggttacagcacctttctttctccaatcaactg |
332 |
Q |
| |
|
||||||||||||||||||| ||||| || || ||||| || ||||||||||||||||| |||| |
|
|
| T |
30881239 |
acttaccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactg |
30881177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 30892322 - 30892260
Alignment:
| Q |
270 |
acttaccacattgaccttgattcttgaccggggttacagcacctttctttctccaatcaactg |
332 |
Q |
| |
|
||||||||||||||||||| ||||| || || ||||| || ||||||||||||||||| |||| |
|
|
| T |
30892322 |
acttaccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactg |
30892260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 44731553 - 44731617
Alignment:
| Q |
268 |
atacttaccacattgaccttgattcttgaccggggttacagcacctttctttctccaatcaactg |
332 |
Q |
| |
|
||||||||||||||||||||| ||||| || || || || || |||||||| |||||||| |||| |
|
|
| T |
44731553 |
atacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactg |
44731617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University