View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4670-Insertion-3 (Length: 1000)

Name: NF4670-Insertion-3
Description: NF4670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4670-Insertion-3
NF4670-Insertion-3
[»] chr8 (3 HSPs)
chr8 (7-916)||(11401838-11402752)
chr8 (384-468)||(11402998-11403082)
chr8 (497-592)||(11403127-11403222)
[»] chr2 (6 HSPs)
chr2 (360-597)||(42300562-42300814)
chr2 (630-732)||(42913497-42913596)
chr2 (387-597)||(42913221-42913446)
chr2 (630-732)||(42300412-42300511)
chr2 (87-144)||(42301132-42301189)
chr2 (87-144)||(42912819-42912876)
[»] chr6 (3 HSPs)
chr6 (630-732)||(29303559-29303658)
chr6 (387-478)||(29303843-29303934)
chr6 (497-597)||(29303709-29303809)
[»] chr5 (7 HSPs)
chr5 (630-732)||(12529384-12529483)
chr5 (630-732)||(35841539-35841638)
chr5 (387-478)||(35841823-35841914)
chr5 (94-144)||(12643967-12644017)
chr5 (476-597)||(12529212-12529333)
chr5 (476-597)||(35841689-35841810)
chr5 (387-478)||(12529108-12529199)
[»] chr4 (8 HSPs)
chr4 (630-732)||(27730597-27730696)
chr4 (630-732)||(45965826-45965925)
chr4 (387-597)||(45965976-45966201)
chr4 (763-852)||(24146389-24146478)
chr4 (476-597)||(27730425-27730546)
chr4 (387-478)||(27730321-27730412)
chr4 (405-478)||(24146842-24146915)
chr4 (87-144)||(45966546-45966603)
[»] chr1 (4 HSPs)
chr1 (630-732)||(29282638-29282737)
chr1 (630-732)||(49220633-49220732)
chr1 (387-597)||(29282362-29282587)
chr1 (87-144)||(29281960-29282017)


Alignment Details
Target: chr8 (Bit Score: 812; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 7 - 916
Target Start/End: Complemental strand, 11402752 - 11401838
Alignment:
Q  7 aattttaggcacaaagcagccgattgcaaatacaacatcaggcaaacgtggcagaaaattcatatcaaaacactgatgagtcttgtgaaagtgtattgct 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11402752 aattttaggcacaaagcagccgattgcaaatacaacatcaggcaaacgtggcagaaaattcatatcaaaacactaatgagtcttgtgaaagtgtattgct 11402653  T
Q  107 tgctaaaattaaaccatatggattttcataagactcacaattgtttcgatctaaattttctgcaatctgtgcatgatgtttatatcttcaatcgtctgct 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11402652 tgctaaaattaaaccatatggattttcataagactcacaattgttttgatataaattttttgcaatctgtgcatgatgtttatatcttcaatcgtctgct 11402553  T
Q  207 ttgcgctcaaacttttcgcggtgaaaacataatttctcctctcttggttgtaataacttcttcctttgccatatatagttgatagaaccaaaattgtttc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11402552 ttgcgctcaaacttttcgcggtgaaaacataatttctcctctcttggttgtaataacttcttcctttgccatatataattgatagaaccaaaattgtttc 11402453  T
Q  307 caccttttggattgaaattgttctctcttttgatcgaagtttccatgtcctctcccatttgattggattcattaatattattgaagttcacttgactttt 406  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11402452 caccttttggattgaaattgttctctcttttgatcgaagttttcatgtcctctcccatttgattggattcattaatgttattgaagttcacttgactttt 11402353  T
Q  407 caaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaaggtatcaatatcgtggagctccattatc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11402352 caaggcttcctcctttgctttctctgtcttctgcaatattctgttgatgtgacttttgatacttccctgcaaggtatcaatatcgtggagctccattatc 11402253  T
Q  507 gtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctcaaattttgta 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402252 gtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctcaaattttgta 11402153  T
Q  607 acgggagaaaaatattgttccatgaacttgatatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttc 706  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402152 acaggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttc 11402053  T
Q  707 atgtaacaataacttcaatatgtccctctttatttctttgataatttgtgatattgcccttctacgagtattttcattagctccttgttgtgaagcaagc 806  Q
    |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11402052 atgtaac---aacttcaatatgtccctctttatttctttgataatttgtgatattgcccttctacgagtattttcattagctccttgttgtgaaccaagc 11401956  T
Q  807 tcaataaagctcccaatattgtgagctttaagatgtgttatc-atc----aaaggt--tcaataactg-aatctaatttcgaaccgaacgatgttgtagt 898  Q
    |||||||||||||||||||||||||||||||||||||||||| |||    ||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  11401955 tcaataaagctcccaatattgtgagctttaagatgtgttatcaatcatcaaaaggttctcaataactgaaatctaatttcgaaccgaacgatgttgtagt 11401856  T
Q  899 tgttcatcataactctct 916  Q
    ||||||||||||||||||    
T  11401855 tgttcatcataactctct 11401838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 384 - 468
Target Start/End: Original strand, 11402998 - 11403082
Alignment:
Q  384 ttattgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatac 468  Q
    ||||||| |||||| || ||||||| ||||||||||||| |||| || ||||||| ||||||| ||||||| |||||||||||||    
T  11402998 ttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttgacatgactttcgatac 11403082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 497 - 592
Target Start/End: Original strand, 11403127 - 11403222
Alignment:
Q  497 ctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacac 592  Q
    ||||||||||||||||||||||||| |||  || ||| ||||| |   |||| ||||||||||||||||| |||||  ||||| ||||||||||||    
T  11403127 ctccattatcgtagtcaccacatgaccaaactttatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 11403222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 3e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 360 - 597
Target Start/End: Complemental strand, 42300814 - 42300562
Alignment:
Q  360 cccatttgattggattcattaatattattgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgac 459  Q
    ||||| ||| ||||||||  ||| || |||| |||||| || || |||||||||||||||||| | || ||  |||||| ||||||||||||||| || |    
T  42300814 cccatctgactggattcaacaatgttgttgaggttcacctggctcttcaaggcttcctcctttacattttcactcttctccaatattctgttgacatggc 42300715  T
Q  460 tttcgatacttccctgcaa---------------ggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattaca 544  Q
    |||| || |||||||||||               ||||||  ||||||||  ||||| ||||||||||||||||||||||  |||||||  |||  | ||    
T  42300714 tttcaatgcttccctgcaactctgctaccgacaaggtatcggtatcgtgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgca 42300615  T
Q  545 tagacttttctccaccaccttgttatccataatattttctccatacacgctca 597  Q
    |||| ||||||||||||||||| ||||   ||||| |||||||||||| ||||    
T  42300614 tagaattttctccaccaccttgctatcttgaatatcttctccatacactctca 42300562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 630 - 732
Target Start/End: Original strand, 42913497 - 42913596
Alignment:
Q  630 gaacttgatatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 729  Q
    ||||| || ||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  42913497 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 42913593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 387 - 597
Target Start/End: Original strand, 42913221 - 42913446
Alignment:
Q  387 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa-------- 478  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||            
T  42913221 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaactctgcta 42913320  T
Q  479 -------ggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatc 571  Q
           ||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||    
T  42913321 ccgacaaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatc 42913420  T
Q  572 cataatattttctccatacacgctca 597  Q
       ||||| |||||||||||| ||||    
T  42913421 ttgaatatcttctccatacactctca 42913446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 732
Target Start/End: Complemental strand, 42300511 - 42300412
Alignment:
Q  630 gaacttgatatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 729  Q
    ||||| || ||||||||||||||||| ||||||| |||||| ||||  ||| |||||  || |||||||||||||| |||| ||   |||||||||||||    
T  42300511 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctaagctttctctactcctttatgtgac---aacttcaatatgt 42300415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 42301189 - 42301132
Alignment:
Q  87 tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcac 144  Q
    |||| ||||||||||||||||||||||| ||||| || | |||||| | |||||||||    
T  42301189 tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcac 42301132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 42912819 - 42912876
Alignment:
Q  87 tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcac 144  Q
    |||| ||||||||||||||||||||||| ||||| || | |||||| | |||||||||    
T  42912819 tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcac 42912876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 630 - 732
Target Start/End: Complemental strand, 29303658 - 29303559
Alignment:
Q  630 gaacttgatatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 729  Q
    ||||| || ||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  29303658 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 29303562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 29303934 - 29303843
Alignment:
Q  387 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 478  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||    
T  29303934 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa 29303843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 597
Target Start/End: Complemental strand, 29303809 - 29303709
Alignment:
Q  497 ctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctc 596  Q
    ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   ||||| |||||||||||| |||    
T  29303809 ctccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctc 29303710  T
Q  597 a 597  Q
    |    
T  29303709 a 29303709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 630 - 732
Target Start/End: Original strand, 12529384 - 12529483
Alignment:
Q  630 gaacttgatatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 729  Q
    ||||| || ||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  12529384 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 12529480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 630 - 732
Target Start/End: Complemental strand, 35841638 - 35841539
Alignment:
Q  630 gaacttgatatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 729  Q
    ||||| || ||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  35841638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 35841542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 35841914 - 35841823
Alignment:
Q  387 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 478  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||    
T  35841914 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa 35841823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 12644017 - 12643967
Alignment:
Q  94 aaagtgtattgcttgctaaaattaaaccatatggattttcataagactcac 144  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  12644017 aaagtgtattgcttgctaaaaataaactatatggaatttcataagactcac 12643967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 476 - 597
Target Start/End: Original strand, 12529212 - 12529333
Alignment:
Q  476 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 575  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  12529212 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 12529311  T
Q  576 atattttctccatacacgctca 597  Q
    |||| |||||||||||| ||||    
T  12529312 atatcttctccatacactctca 12529333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 476 - 597
Target Start/End: Complemental strand, 35841810 - 35841689
Alignment:
Q  476 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 575  Q
    |||||||||| |||| |||  ||||| |||| |||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  35841810 caaggtatcagtatcatgggactccaatatcatagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 35841711  T
Q  576 atattttctccatacacgctca 597  Q
    |||| |||||||||||| ||||    
T  35841710 atatcttctccatacactctca 35841689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 12529108 - 12529199
Alignment:
Q  387 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 478  Q
    |||| |||||| || || |||||||||||||||||| |||| || || |||| |||||||| |||||| || ||||| || |||||||||||    
T  12529108 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtattctccaatattcggttgacatggctttcaatgcttccctgcaa 12529199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 630 - 732
Target Start/End: Original strand, 27730597 - 27730696
Alignment:
Q  630 gaacttgatatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 729  Q
    ||||| || ||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  27730597 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 27730693  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 630 - 732
Target Start/End: Complemental strand, 45965925 - 45965826
Alignment:
Q  630 gaacttgatatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 729  Q
    ||||| || ||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  45965925 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 45965829  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 387 - 597
Target Start/End: Complemental strand, 45966201 - 45965976
Alignment:
Q  387 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa-------- 478  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||            
T  45966201 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaactctgcta 45966102  T
Q  479 -------ggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatc 571  Q
           |||||| ||||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||    
T  45966101 ccgacaaggtatcgatatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatc 45966002  T
Q  572 cataatattttctccatacacgctca 597  Q
       ||||| |||||||||||| ||||    
T  45966001 ttgaatatcttctccatacactctca 45965976  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 763 - 852
Target Start/End: Complemental strand, 24146478 - 24146389
Alignment:
Q  763 cccttctacgagtattttcattagctccttgttgtgaagcaagctcaataaagctcccaatattgtgagctttaagatgtgttatcatca 852  Q
    |||||||||||| |  ||||| ||||||||||||| || ||| ||||| ||||||||  || ||||||||||||||||||||| ||||||    
T  24146478 cccttctacgagcaagttcatcagctccttgttgtaaaccaaactcaacaaagctccatatgttgtgagctttaagatgtgttgtcatca 24146389  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 476 - 597
Target Start/End: Original strand, 27730425 - 27730546
Alignment:
Q  476 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 575  Q
    |||||||||| |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  27730425 caaggtatcagtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 27730524  T
Q  576 atattttctccatacacgctca 597  Q
    |||| |||||||||||| ||||    
T  27730525 atatcttctccatacactctca 27730546  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 27730321 - 27730412
Alignment:
Q  387 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 478  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||| | |||||||| |||||| || ||||| || |||||||||||    
T  27730321 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttttccaatattcggttgacatggctttcaatgcttccctgcaa 27730412  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 24146915 - 24146842
Alignment:
Q  405 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 478  Q
    |||||||||||||||||| |||| || ||||| | ||||||||| ||||| || ||||| || |||||||||||    
T  24146915 ttcaaggcttcctcctttactttttcagtcttatccaatattctattgacatggctttcaatgcttccctgcaa 24146842  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 45966603 - 45966546
Alignment:
Q  87 tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcac 144  Q
    |||| ||||||||||||||||||||||| ||||| || | |||||| | |||||||||    
T  45966603 tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcac 45966546  T

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Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 630 - 732
Target Start/End: Original strand, 29282638 - 29282737
Alignment:
Q  630 gaacttgatatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 729  Q
    ||||| || ||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  29282638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 29282734  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 630 - 732
Target Start/End: Original strand, 49220633 - 49220732
Alignment:
Q  630 gaacttgatatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 729  Q
    ||||| || ||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  49220633 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 49220729  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 387 - 597
Target Start/End: Original strand, 29282362 - 29282587
Alignment:
Q  387 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa-------- 478  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||            
T  29282362 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaactctgcta 29282461  T
Q  479 -------ggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatc 571  Q
           ||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||    
T  29282462 ccgacaaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatc 29282561  T
Q  572 cataatattttctccatacacgctca 597  Q
       ||||| |||||||||||| ||||    
T  29282562 ttgaatatcttctccatacactctca 29282587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 29281960 - 29282017
Alignment:
Q  87 tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcac 144  Q
    |||| ||||||||||||||||||||||| ||||| || | |||||| | |||||||||    
T  29281960 tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcac 29282017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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