View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4670-Insertion-4 (Length: 528)
Name: NF4670-Insertion-4
Description: NF4670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4670-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Complemental strand, 40522659 - 40522208
Alignment:
| Q |
8 |
tatattattttattggtttttcattttccattaccctcatgatgatgttcatgtctctattttcatgttattggcaaaacaggctgcaatctagtggcat |
107 |
Q |
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| T |
40522659 |
tatattattttattggtttttcattttccattaccctcatgatgatgttcatgtctctattttcatgttattggcaaaacaggatgcaatctagtggcat |
40522560 |
T |
|
| Q |
108 |
caattctaacacagatcatactactgaagtgaatattgaagtatgtgaagaagaaagagacgttaatccgaacagttaccccattttgttgtactcccaa |
207 |
Q |
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| T |
40522559 |
caattctaacacagatcatactactgaagtgaatattgaagtatgtgaagaagaaagagacgttaatccgaacagttaccccattttgttgtactcccaa |
40522460 |
T |
|
| Q |
208 |
gtcaagtttcataagcctgatgattcaacatcactcatttgctcaatttgtttgggagattataaagattcagagtggttgcgtttcttacctgattgtg |
307 |
Q |
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| T |
40522459 |
gtcaagtttcataagcctgatgattcaacatcactcatttgctcaatttgtttgggagattataaagatttagagtggttgcgtttcttacctgattgtg |
40522360 |
T |
|
| Q |
308 |
gtcacttttttcataaggactgtattgctgcatggtttaggttaaacctctcttgtcccctctgtcgaaacttgccaatcccaactcctctttctgaagt |
407 |
Q |
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| T |
40522359 |
gtcacttttttcataaggactgtattgctgcatggtttaggtcaaacctctcttgtcccctctgtcgaaacttgccaatcccaactcctctttctgaagt |
40522260 |
T |
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| Q |
408 |
tacactcttggcaactacacataattgagtataatctctacaaaagttaaga |
459 |
Q |
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| T |
40522259 |
tacactcttggcaactacacataattgagtataagctctacacaagttaaga |
40522208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 181 - 392
Target Start/End: Complemental strand, 40526395 - 40526184
Alignment:
| Q |
181 |
agttaccccattttgttgtactcccaagtcaagtttcataagcctgatgattcaacatcactcatttgctcaatttgtttgggagattataaagattcag |
280 |
Q |
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||||||||| ||||| ||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40526395 |
agttaccccgttttgctgtactcacaagtcaagtttcatcataaggctgattcaacatcactcatttgctcaatttgtttgggagattataaagattcag |
40526296 |
T |
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| Q |
281 |
agtggttgcgtttcttacctgattgtggtcacttttttcataaggactgtattgctgcatggtttaggttaaacctctcttgtcccctctgtcgaaactt |
380 |
Q |
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| T |
40526295 |
agtggttgcgtttcttacctgattgtggtcacttttttcataaggactgtattgctacatggttcaggctaaacctctcatgtcctctatgtcgaaactc |
40526196 |
T |
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| Q |
381 |
gccaatcccaac |
392 |
Q |
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|||| ||||||| |
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| T |
40526195 |
gccactcccaac |
40526184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 469 - 528
Target Start/End: Complemental strand, 40522089 - 40522030
Alignment:
| Q |
469 |
tgtgtataagtcattgctcccaacaccgtacatcatcactcaacccctaccatctttttt |
528 |
Q |
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| T |
40522089 |
tgtgtataagtcattgctcccaacaccgtacatcatcactcaacccctaccatctttttt |
40522030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 40526538 - 40526479
Alignment:
| Q |
47 |
tgatgatgttcatgtctctattttcatgttattggcaaaacaggctgcaatctagtggca |
106 |
Q |
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| T |
40526538 |
tgatgatgttcatgtctctattttcatgttaccggcaaaacagactgctatctagaggca |
40526479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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